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Deep, Unbiased, and Quantitative Mass Spectrometry-Based Plasma Proteome Analysis of Individual Responses to mRNA COVID-19 Vaccine Huang, Ting; Campos, Alex Rosa; Wang, Jian; Stukalov, Alexey; Diaz, Ramon; Maurya, Svetlana; Motamedchaboki, Khatereh; Hornburg, Daniel; Saciloto-de-Oliveira, Laura R.; Innocente-Alves, Camila; Calegari-Alves, Yohana P.; Batzoglou, Serafim; Beys-da-Silva, Walter O.; Santi, Lucelia Share Save
The Circulating Proteome-Technological Developments, Current Challenges, and Future Trends Geyer, Philipp E.; Hornburg, Daniel; Pernemalm, Maria; Hauck, Stefanie M.; Palaniappan, Krishnan K.; Albrecht, Vincent; Dagley, Laura F.; Moritz, Robert L.; Yu, Xiaobo; Edfors, Fredrik; Vandenbrouck, Yves; Mueller-Reif, Johannes B.; Sun, Zhi; Brun, Virginie; Ahadi, Sara; Omenn, Gilbert S.; Deutsch, Eric W.; Schwenk, Jochen M. Share Save
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Secretome profiling reveals acute changes in oxidative stress, brain homeostasis, and coagulation following short-duration spaceflight Houerbi, Nadia; Kim, Jangkeun; Overbey, Eliah G.; Batra, Richa; Schweickart, Annalise; Patras, Laura; Lucotti, Serena; Ryon, Krista A.; Najjar, Deena; Meydan, Cem; Damle, Namita; Chin, Christopher; Narayanan, S. Anand; Guarnieri, Joseph W.; Widjaja, Gabrielle; Beheshti, Afshin; Tobias, Gabriel; Vatter, Fanny; Hirschberg, Jeremy Wain; Kleinman, Ashley; Afshin, Evan E.; Mackay, Matthew; Chen, Qiuying; Miller, Dawson; Gajadhar, Aaron S.; Williamson, Lucy; Tandel, Purvi; Yang, Qiu; Chu, Jessica; Benz, Ryan; Siddiqui, Asim; Hornburg, Daniel; Gross, Steven; Shirah, Bader; Krumsiek, Jan; Mateus, Jaime; Mao, Xiao; Matei, Irina; Mason, Christopher E. Share Save
A scaled proteomic discovery study for prostate cancer diagnostic signatures using Proteograph workflow with trapped ion mobility mass spectrometry Flory, Mark; Chang, Matthew; Cartier, Jessie May; Lange, Jane; Moore, Travis; McGann, James; Kopp, Ryan; Liss, Michael; Leach, Robin; Albracht, Brenna; Dai, James; Krawitzky, Michael; Elgierari, Eltaher; Chu, Jessica; Pease, Paul; Mahoney, Max; Ferdosi, Shadi; Benz, Ryan; Motamedchaboki, Khatereh; Siddiqui, Asim; Zamanighomi, Mahdi; Alavi, Amir; Guturu, Harendra; Hornburg, Daniel; Batzoglou, Serafim Share Save
Dynamic lipidome alterations associated with human health, disease and ageing Hornburg, Daniel; Wu, Si; Moqri, Mahdi; Zhou, Xin; Contrepois, Kevin; Bararpour, Nasim; Traber, Gavin M.; Su, Baolong; Metwally, Ahmed A.; Avina, Monica; Zhou, Wenyu; Ubellacker, Jessalyn M.; Mishra, Tejaswini; Rose, Sophia Miryam Schussler-Fiorenza; Kavathas, Paula B.; Williams, Kevin J.; Snyder, Michael P. Share Save
Multi-omics microsampling for the profiling of lifestyle-associated changes in health Shen, Xiaotao; Kellogg, Ryan; Panyard, Daniel J.; Bararpour, Nasim; Castillo, Kevin Erazo; Lee-McMullen, Brittany; Delfarah, Alireza; Ubellacker, Jessalyn; Ahadi, Sara; Rosenberg-Hasson, Yael; Ganz, Ariel; Contrepois, Kevin; Michael, Basil; Simms, Ian; Wang, Chuchu; Hornburg, Daniel; Snyder, Michael P. Share Save
Enhanced Competition at the Nano-Bio Interface Enables Comprehensive Characterization of Protein Corona Dynamics and Deep Coverage of Proteomes Ferdosi, Shadi; Stukalov, Alexey; Hasan, Moaraj; Tangeysh, Behzad; Brown, Tristan R.; Wang, Tianyu; Elgierari, Eltaher M.; Zhao, Xiaoyan; Huang, Yingxiang; Alavi, Amir; Lee-McMullen, Brittany; Chu, Jessica; Figa, Mike; Tao, Wei; Wang, Jian; Goldberg, Martin; O'Brien, Evan S.; Xia, Hongwei; Stolarczyk, Craig; Weissleder, Ralph; Farias, Vivek; Batzoglou, Serafim; Siddiqui, Asim; Farokhzad, Omid C.; Hornburg, Daniel Share Save
Engineered nanoparticles enable deep proteomics studies at scale by leveraging tunable nano-bio interactions Ferdosi, Shadi; Tangeysh, Behzad; Brown, Tristan R.; Everley, Patrick A.; Figa, Michael; McLean, Matthew; Elgierari, Eltaher M.; Zhao, Xiaoyan; Garcia, Veder J.; Wang, Tianyu; Chang, Matthew E. K.; Riedesel, Kateryna; Chu, Jessica; Mahoney, Max; Xia, Hongwei; O'Brien, Evan S.; Stolarczyk, Craig; Harris, Damian; Platt, Theodore L.; Ma, Philip; Goldberg, Martin; Langer, Robert; Flory, Mark R.; Benz, Ryan; Tao, Wei; Cuevas, Juan Cruz; Batzoglou, Serafim; Blume, John E.; Siddiqui, Asim; Hornburg, Daniel; Farokhzad, Omid C. Share Save
Amyloid-like aggregating proteins cause lysosomal defects in neurons via gain-of-function toxicity Riera-Tur, Irene; Schaefer, Tillman; Hornburg, Daniel; Mishra, Archana; Padilha, Miguel da Silva; Fernandez-Mosquera, Lorena; Feigenbutz, Dennis; Auer, Patrick; Mann, Matthias; Baumeister, Wolfgang; Klein, Rudiger; Meissner, Felix; Raimundo, Nuno; Fernandez-Busnadiego, Ruben; Dudanova, Irina Share Save
Cross-Laboratory Standardization of Preclinical Lipidomics Using Differential Mobility Spectrometry and Multiple Reaction Monitoring Ghorasaini, Mohan; Mohammed, Yassene; Adamski, Jerzy; Bettcher, Lisa; Bowden, John A.; Cabruja, Matias; Contrepois, Kevin; Ellenberger, Mathew; Gajera, Bharat; Haid, Mark; Hornburg, Daniel; Hunter, Christie; Jones, Christina M.; Klein, Theo; Mayboroda, Oleg; Mirzaian, Mina; Moaddel, Ruin; Ferrucci, Luigi; Lovett, Jacqueline; Nazir, Kenneth; Pearson, Mackenzie; Ubhi, Baljit K.; Raftery, Daniel; Riols, Fabien; Sayers, Rebekah; Sijbrands, Eric J. G.; Snyder, Michael P.; Su, Baolong; Velagapudi, Vidya; Williams, Kevin J.; de Rijke, Yolanda B.; Giera, Martin Share Save
Loss of full-length hnRNP R isoform impairs DNA damage response in motoneurons by inhibiting Yb1 recruitment to chromatin Ghanawi, Hanaa; Hennlein, Luisa; Zare, Abdolhossein; Bader, Jakob; Salehi, Saeede; Hornburg, Daniel; Ji, Changhe; Sivadasan, Rajeeve; Drepper, Carsten; Meissner, Felix; Mann, Matthias; Jablonka, Sibylle; Briese, Michael; Sendtner, Michael Share Save
A DMS Shotgun Lipidomics Workflow Application to Facilitate HighThroughput, Comprehensive Lipidomics Su, Baolong; Bettcher, Lisa F.; Hsieh, Wei-Yuan; Hornburg, Daniel; Pearson, Mackenzie J.; Blomberg, Niek; Giera, Martin; Snyder, Michael P.; Raftery, Daniel; Bensinger, Steven J.; Williams, Kevin J. Share Save
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A genome-wide atlas of co-essential modules assigns function to uncharacterized genes Wainberg, Michael; Kamber, Roarke A.; Balsubramani, Akshay; Meyers, Robin M.; Sinnott-Armstrong, Nasa; Hornburg, Daniel; Jiang, Lihua; Chan, Joanne; Jian, Ruiqi; Gu, Mingxin; Shcherbina, Anna; Dubreuil, Michael M.; Spees, Kaitlyn; Meuleman, Wouter; Snyder, Michael P.; Bassik, Michael C.; Kundaje, Anshul Share Save
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