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Higher Promoter Methylation of the Ubiquitin-Associated and SH3 Domain Containing A (UBASH3A) Gene Is Associated With T-Lymphocyte Ontogeny and Reduced Susceptibility to Early-Onset Sepsis Wang, Ziyi; Amenyogbe, Nelly; Ben-Othman, Rym; Cai, Bing; Lo, Mandy; Idoko, Olubukola T.; Odumade, Oludare A.; Falsafi, Reza; Blimkie, Travis M.; An, Andy; Shannon, Casey P.; Montante, Sebastiano; Dhillon, Bhavjinder K.; Diray-Arce, Joann; Ozonoff, Al; Smolen, Kinga K.; Brinkman, Ryan R.; Mcenaney, Kerry; Angelidou, Asimenia; Richmond, Peter; Tebbutt, Scott J.; Kampmann, Beate; Hancock, Robert E. W.; Lee, Amy H. Y.; Levy, Ofer; Kollmann, Tobias R.; Martino, David Share Save
Cyt-Geist: Current and Future Challenges in Cytometry: Reports of the CYTO 2025 Conference Workshops Wallace, Paul K.; Jellison, Evan R.; Thornton, Sherry; Kluepfel, Kathleen; Back, Jessica; Beadnell, Thomas C.; Bebes, Attila; Behrends, Jochen; Belkina, Anna C.; Black, Michele; Bogdanoski, Goce; Bollati-fogolin, Mariela; Bonte, Sarah; Van Der Borght, Katrien; Brinkman, Ryan R.; Brundage, Kathleen; Bushnell, Tim; Chiu, Daniel T.; Chow, Norman; Ciccolella, Christopher O.; Cochran, Matthew; Czechowska, Kamila; Dagla, Kleopatra; Daniel, Benjamin; De La Cruz, Gelo; Van Duyse, Julie; Font, Laura Ferrer; Fornas, Oscar; Garcia-garcia, Sara; Gardner, Rui; Van Gassen, Sofie; Gimenes, Daniel; Grenfell, Richard; Grider-hayes, Madeline J.; Grose, Randall; Hall, Christopher; Hally, Kathryn E.; Hameetman, Marjolijn; Hogg, Karen; Houston, Jessica; Irish, Jonathan M.; Isterdael, Gert Van; Jaimes, Maria; Janetzki, Sylvia; Kim, Cheryl; Koladiya, Abhishek; Lamote, Jochen; Lannigan, Joanne; Leconte, Julien; Litwin, Virginia; Longhini, Ana; Loof, Nicolas; Lozano-andres, Estefania; Lundsten, Kelly; Mage, Peter; Mair, Florian; Martins, Catarina Gregorio; Mccausland, Megan; Mcguire, Helen M.; Meskas, Justin; Murphy, William; Nolan, John; Oliveira, Barbara; Ordonez-rueda, Diana; Orlowski-oliver, Eva; Petersen, Charlotte Christie; Poulton, Nicole J.; Putri, Givanna; Quadrini, Karen J.; Ramasz, Beata; Ruhrmund, Donald; Singh, Vikas V.; Small, Sam J.; Smith, Natalie J.; Spidlen, Josef; Stegen, Camille; Tak, Tamar; Thompson, Sam; Thomson, Michael; Vocelle, Daniel; Walker, Rachael V.; Walsh, Robin E.; Wang, Lili; Wang, Yu-fen; Weglarz, Meredith; Winker, Moritz; Wood, James C. S.; Woolard, Stacie; Yeh, Nai-yu; Yuecel, Raif; Rajwa, Bartek Share Save
AI in flow cytometry: Current applications and future directions Yue, Alice; Brinkman, Ryan R.; Nash, Veronica; Junker, Fabian; Bogdanoski, Goce; Divekar, Anagha; Tyznik, Aaron; Spidlen, Josef; Kern, Wolfgang; Petriz, Jordi; Wloka, Kaska; Czechowska, Kamila Share Save
DNA Methylation signatures underpinning blood neutrophil to lymphocyte ratio during first week of human life Martino, David; Kresoje, Nina; Amenyogbe, Nelly; Ben-Othman, Rym; Cai, Bing; Lo, Mandy; Idoko, Olubukola; Odumade, Oludare A.; Falsafi, Reza; Blimkie, Travis M.; An, Andy; Shannon, Casey P.; Montante, Sebastiano; Dhillon, Bhavjinder K.; Diray-Arce, Joann; Al Ozonoff, Al; Smolen, Kinga K.; Brinkman, Ryan R.; Mcenaney, Kerry; Angelidou, Asimenia; Richmond, Peter; Tebbutt, Scott J.; EPIC HIPC consortium, Beate; Kampmann, Beate; Levy, Ofer; Hancock, Robert E. W.; Lee, Amy H. Y.; Kollmann, Tobias R. Share Save
Breastfeeding and Neonatal Age Influence Neutrophil-Driven Ontogeny of Blood Cell Populations in the First Week of Human Life Montante, Sebastiano; Ben-Othman, Rym; Amenyogbe, Nelly; Angelidou, Asimenia; van den Biggelaar, Anita; Cai, Bing; Chen, Yixuan; Darboe, Alansana; Diray-Arce, Joann; Ford, Rebecca; Idoko, Olubukola; Lee, Amy; Lo, Mandy; Mcenaney, Kerry; Malek, Mehrnoush; Martino, David; Masiria, Geraldine; Odumade, Oludare A.; Pomat, William; Shannon, Casey; Smolen, Kinga; Ozonoff, Al; Richmond, Peter; Tebbutt, Scott; Levy, Ofer; Kampmann, Beate; Brinkman, Ryan; Kollmann, Tobias Share Save
Single-cell profiling reveals a memory B cell-like subtype of follicular lymphoma with increased transformation risk Wang, Xuehai; Nissen, Michael; Gracias, Deanne; Kusakabe, Manabu; Simkin, Guillermo; Jiang, Aixiang; Duns, Gerben; Sarkozy, Clementine; Hilton, Laura; Chavez, Elizabeth A.; Segat, Gabriela C.; Wong, Rachel; Kim, Jubin; Aoki, Tomohiro; Islam, Rashedul; May, Christina; Hung, Stacy; Tyshchenko, Kate; Brinkman, Ryan R.; Hirst, Martin; Karsan, Aly; Freeman, Ciara; Sehn, Laurie H.; Morin, Ryan D.; Roth, Andrew J.; Savage, Kerry J.; Craig, Jeffrey W.; Shah, Sohrab P.; Steidl, Christian; Scott, David W.; Weng, Andrew P. Share Save
Multi-Omic Data Integration Allows Baseline Immune Signatures to Predict Hepatitis B Vaccine Response in a Small Cohort Shannon, Casey P.; Blimkie, Travis M.; Ben-Othman, Rym; Gladish, Nicole; Amenyogbe, Nelly; Drissler, Sibyl; Edgar, Rachel D.; Chan, Queenie; Krajden, Mel; Foster, Leonard J.; Kobor, Michael S.; Mohn, William W.; Brinkman, Ryan R.; Le Cao, Kim-Anh; Scheuermann, Richard H.; Tebbutt, Scott J.; Hancock, Robert Ew; Koff, Wayne C.; Kollmann, Tobias R.; Sadarangani, Manish; Lee, Amy Huei-Yi Share Save
Systems Biology Methods Applied to Blood and Tissue for a Comprehensive Analysis of Immune Response to Hepatitis B Vaccine in Adults Ben-Othman, Rym; Cai, Bing; Liu, Aaron C.; Varankovich, Natallia; He, Daniel; Blimkie, Travis M.; Lee, Amy H.; Gill, Erin E.; Novotny, Mark; Aevermann, Brian; Drissler, Sibyl; Shannon, Casey P.; McCann, Sarah; Marty, Kim; Bjornson, Gordean; Edgar, Rachel D.; Lin, David Tse Shen; Gladish, Nicole; Maclsaac, Julia; Amenyogbe, Nelly; Chan, Queenie; Llibre, Alba; Collin, Joyce; Landais, Elise; Le, Khoa; Reiss, Samantha M.; Koff, Wayne C.; Havenar-Daughton, Colin; Heran, Manraj; Sangha, Bippan; Walt, David; Krajden, Mel; Crotty, Shane; Sok, Devin; Briney, Bryan; Burton, Dennis R.; Duffy, Darragh; Foster, Leonard J.; Mohn, William W.; Kobor, Michael S.; Tebbutt, Scott J.; Brinkman, Ryan R.; Scheuermann, Richard H.; Hancock, Robert E. W.; Kollmann, Tobias R.; Sadarangani, Manish Share Save
Age Related Differences in the Biology of Chronic Graft-Versus-Host Disease After Hematopoietic Stem Cell Transplantation Cuvelier, Geoff D. E.; Li, Amanda; Drissler, Sibyl; Kariminia, Amina; Abdossamadi, Sayeh; Rozmus, Jacob; Chanoine, Jean-Pierre; Ng, Bernard; Mostafavi, Sara; Brinkman, Ryan R.; Schultz, Kirk R. Share Save
High-throughput phenotyping reveals expansive genetic and structural underpinnings of immune variation Abeler-Dorner, Lucie; Laing, Adam G.; Lorenc, Anna; Ushakov, Dmitry S.; Clare, Simon; Speak, Anneliese O.; Duque-Correa, Maria A.; White, Jacqueline K.; Ramirez-Solis, Ramiro; Saran, Namita; Bull, Katherine R.; Moron, Belen; Iwasaki, Jua; Barton, Philippa R.; Caetano, Susana; Hng, Keng I.; Cambridge, Emma; Forman, Simon; Crockford, Tanya L.; Griffiths, Mark; Kane, Leanne; Harcourt, Katherine; Brandt, Cordelia; Notley, George; Babalola, Kolawole O.; Warren, Jonathan; Mason, Jeremy C.; Meeniga, Amrutha; Karp, Natasha A.; Melvin, David; Cawthorne, Eleanor; Weinrick, Brian; Rahim, Albina; Drissler, Sibyl; Meskas, Justin; Yue, Alice; Lux, Markus; Song-Zhao, George X.; Chan, Anna; Reviriego, Carmen Ballesteros; Abeler, Johannes; Wilson, Heather; Przemska-Kosicka, Agnieszka; Edmans, Matthew; Strevens, Natasha; Pasztorek, Markus; Meehan, Terrence F.; Powrie, Fiona; Brinkman, Ryan; Dougan, Gordon; Jacobs, William, Jr.; Lloyd, Clare M.; Cornall, Richard J.; Maloy, Kevin J.; Grencis, Richard K.; Griffiths, Gillian M.; Adams, David J.; Hayday, Adrian C. Share Save
Improving the Quality and Reproducibility of Flow Cytometry in the Lung An Official American Thoracic Society Workshop Report Tighe, Robert M.; Redente, Elizabeth F.; Yu, Yen-Rei; Herold, Susanne; Sperling, Anne, I; Curtis, Jeffrey L.; Duggan, Ryan; Swaminathan, Suchitra; Nakano, Hideki; Zacharias, William J.; Janssen, William J.; Freeman, Christine M.; Brinkman, Ryan R.; Singer, Benjamin D.; Jakubzick, Claudia, V; Misharin, Alexander, V Share Save
Dynamic molecular changes during the first week of human life follow a robust developmental trajectory Lee, Amy H.; Shannon, Casey P.; Amenyogbe, Nelly; Bennike, Tue B.; Diray-Arce, Joann; Idoko, Olubukola T.; Gill, Erin E.; Ben-Othman, Rym; Pomat, William S.; Van Haren, Simon D.; Cao, Kim-Anh Le; Cox, Momoudou; Darboe, Alansana; Falsafi, Reza; Ferrari, Davide; Harbeson, Daniel J.; He, Daniel; Bing, Cai; Hinshaw, Samuel J.; Ndure, Jorjoh; Njie-Jobe, Jainaba; Pettengill, Matthew A.; Richmond, Peter C.; Ford, Rebecca; Saleu, Gerard; Masiria, Geraldine; Matlam, John Paul; Kirarock, Wendy; Roberts, Elishia; Malek, Mehrnoush; Sanchez-Schmitz, Guzman; Singh, Amrit; Angelidou, Asimenia; Smolen, Kinga K.; Brinkman, Ryan R.; Ozonoff, Al; Hancock, Robert E. W.; van den Biggelaar, Anita H. J.; Steen, Hanno; Tebbutt, Scott J.; Kampmann, Beate; Levy, Ofer; Kollmann, Tobias R.; Vo, Diana; Kraft, Ken; McEnaney, Kerry; Vignolo, Sofia; Marchant, Arnaud Share Save
A standardized immune phenotyping and automated data analysis platform for multicenter biomarker studies Ivison, Sabine; Malek, Mehrnoush; Garcia, Rosa, V; Broady, Raewyn; Halpin, Anne; Richaud, Manon; Brant, Rollin F.; Wang, Szu-, I; Goupil, Mathieu; Guan, Qingdong; Ashton, Peter; Warren, Jason; Rajab, Amr; Urschel, Simon; Kumar, Deepali; Streitz, Mathias; Sawitzki, Birgit; Schlickeiser, Stephan; Bijl, Janetta J.; Wall, Donna A.; Delisle, Jean-Sebastien; West, Lori J.; Brinkman, Ryan R.; Levings, Megan K. Share Save
High throughput automated analysis of big flow cytometry data Rahim, Albina; Meskas, Justin; Drissler, Sibyl; Yue, Alice; Lorenc, Anna; Laing, Adam; Saran, Namita; White, Jacqui; Abeler-Dorner, Lucie; Hayday, Adrian; Brinkman, Ryan R. Share Save
Standardized Immunophenotyping in the Canadian National Transplant Research Program: pilot trial of post HSCT samples and development of automated gating pipelines Ivison, Sabine; Janmohamed, Salima; Malek, Mehmoush; Garcia, Rosa; Broady, Raewyn; Halpin, Anne; Richaud, Manon; Brant, Rollin; Delisle, Jean-Sebastien; West, Lori; Brinkman, Ryan R.; Levings, Megan Share Save
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T-Cell Phenotypes Predictive of Frailty and Mortality in Elderly Nursing Home Residents Johnstone, Jennie; Parsons, Robin; Botelho, Fernando; Millar, Jamie; McNeil, Shelly; Fulop, Tamas; McElhaney, Janet E.; Andrew, Melissa K.; Walter, Stephen D.; Devereaux, P. J.; Malek, Mehrnoush; Brinkman, Ryan R.; Bramson, Jonathan; Loeb, Mark Share Save
Standardizing Flow Cytometry Immunophenotyping Analysis from the Human ImmunoPhenotyping Consortium Finak, Greg; Langweiler, Marc; Jaimes, Maria; Malek, Mehrnoush; Taghiyar, Jafar; Korin, Yael; Raddassi, Khadir; Devine, Lesley; Obermoser, Gerlinde; Pekalski, Marcin L.; Pontikos, Nikolas; Diaz, Alain; Heck, Susanne; Villanova, Federica; Terrazzini, Nadia; Kern, Florian; Qian, Yu; Stanton, Rick; Wang, Kui; Brandes, Aaron; Ramey, John; Aghaeepour, Nima; Mosmann, Tim; Scheuermann, Richard H.; Reed, Elaine; Palucka, Karolina; Pascual, Virginia; Blomberg, Bonnie B.; Nestle, Frank; Nussenblatt, Robert B.; Brinkman, Ryan Remy; Gottardo, Raphael; Maecker, Holden; Mccoy, J. Philip Share Save
Thinking Outside the Gate: Single-Cell Assessments in Multiple Dimensions Kvistborg, Pia; Gouttefangeas, Cecile; Aghaeepour, Nima; Cazaly, Angelica; Chattopadhyay, Pratip K.; Chan, Cliburn; Eckl, Judith; Finak, Greg; Hadrup, Sine Reker; Maecker, Holden T.; Maurer, Dominik; Mosmann, Tim; Qiu, Peng; Scheuermann, Richard H.; Welters, Marij J. P.; Ferrari, Guido; Brinkman, Ryan R.; Britten, Cedrik M. Share Save
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