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J

Jacques J. M. van Dongen

Leiden University Medical Center

114H-index
820Paper Count
5.4WCitation Count
Published Papers 306
Publication Date
Flow Cytometric Assessment of Pertactin- and Tetanus Toxoid-Specific B-Cell Kinetics After Tdap Booster Vaccination in Healthy Adults
err2026-04-04
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errMirjam J. Esser; Annieck M. Diks; Liesbeth E. M. Oosten; Rick J. Groenland; Bas de Mooij; Cristina Teodosio; Gertjan J. A. Driessen; Jacques J. M. van Dongen; Magdalena A. Berkowska
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Familial patterns of immune dysregulation in CVID: insights from B- and T-cell phenotyping and antibody profiling
err2026-03-13
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errSE Suzanne E. T. Comans; EG Evelien G. G. Sprenkeler; MH Mischa H. Koenen; ES Elles Simonetti; BV Bram Van Cranenbroek; EV Esther Van Rijssen; RS Riet Strik-Albers; HJ Hans J. P. M. Koenen; JJ Jacques J. M. van Dongen; LM Lilly M. Verhagen; MI Marien I. de Jonge; SS Stefanie S. V. Henriet
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PIDgeon: An Explainable AI Model for Improved Flow Cytometry-Based Screening of Lymphoid Primary Immunodeficiencies
err2026-01-29
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errAnnelies Emmaneel; Jana Neirinck; Alba Torres-Valle; Sofie Van Gassen; Sarah Bonte; Malicorne Buysse; Jacques J M van Dongen; Alberto Orfao; Mirjam van der Burg; Tomas Kalina; Bart N Lambrecht; Ciel De Vriendt; Tessa Kerre; Filomeen Haerynck; Martin Pérez-Andrés; Mattias Hofmans; Carolien Bonroy; Yvan Saeys; null
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Immunological biomarkers of non-infectious complications and overall survival in common variable immunodeficiency
err2025-10-30
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errAlba Torres-Valle; Jana Neirinck; Susana L. Silva; Sonia de Arriba; Cristina Serrano; Lourdes Cordón; Pedro Pablo Arenas-Caro; Dolores Subirá; Marta Ruiz Mercado; Luis I. González Granados; Catarina Martins; Tomas Kalina; Héctor Balastegui-Martín; Marta Dafne Cabanero-Navalon; Miguel Marcos; Sandra Ines; Teresa Contreras; Carlos Prieto; Lucía Guerrero; M.Carmen García Cañadas; Ana Isabel Cordeiro; Beatriz Albarran; Nicolás González Gómez; Guillermina Hurtado; Abelardo Barez; Ignacio Madruga; Alejandro Martin García-Sancho; José María Bastida; Ignacio Davila; Larraitz Aragon; Pedro Mikel Requejo Olaizola; Mattias Hofmans; Ciel De Vriendt; Elena Blanco; María Jara-Acevedo; Tessa Kerre; Amparo Sempere; Filomeen Haerynck; Álvaro Prada; Ana E. Sousa; Carolien Bonroy; Jacques J.M. van Dongen; Martín Pérez-Andrés; Alberto Orfao
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PredLyP: A computational tool for predicting tissue-specific (phago-)lysosomal post-digestion peptides
err2025-10-22
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errMattijn Wagt; Cristina Teodosio; Anniek L. de Jager; Jacques J.M. van Dongen; Marcel J.T. Reinders; Paula Díez; Indu Khatri
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T, B, and NK cells versus the primary immunodeficiency orientation tube for diagnostic screening of IEIs
err2025-10-16
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PREAI
errMartin Perez-Andres; Mirjam van der Burg; Tomas Kalina; Carolien Bonroy; Susana Lopes Silva; Eduardo Lopez-Granados; Sonia Arriba-Méndez; Cristina Serrano; Rafael C. Torres; Artur Paiva; Luis I. Gonzalez-Granado; Ana E. Sousa; Mattias Hofmans; Jacques J.M. van Dongen; Alberto Orfao
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Minimal residual disease assessment following CD19-targeted therapy in B-cell precursor acute lymphoblastic leukemia using standardized 12-color flow cytometry: A EuroFlow study
err2025-04-13
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errVerbeek, Martijn W. C.; Reiterova, Michaela; Laqua, Anna; Rodriguez, Beatriz Soriano; Sedek, Lukasz; Buracchi, Chiara; Buysse, Malicorne; Oliveira, Elen; Engelmann, Robby; Desterro, Joana; De Jong, Anja X.; Boettcher, Sebastian; Jugooa, Romana; Barrena, Susana; Kohlscheen, Saskia; Nierkens, Stefan; Rodriques, Joana G.; Hofmans, Mattias; Gaipa, Giuseppe; Sobral de Costa, Elaine; Mejstrikova, Ester; Szczepanski, Tomasz; Brueggemann, Monika; van Dongen, Jacques J. M.; Orfao, Alberto; van der Velden, Vincent H. J.
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NGS-based IG/TR gene rearrangement profiling in acute lymphoblastic leukemia: age dependence of immunogenetic maturation
errBlood
IF23.1
err2025-03-27
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PREAI
errMichaela Kotrová; Constantin Proske; Nikos Darzentas; Anna Laqua; Britta Kehden; Jan Kässens; Sonja Bendig; Saskia Kohlscheen; Monika Szczepanowski; Wiebke Wessels; Željko Antic; Christiane Pott; Matthias Ritgen; Jacques J. M. van Dongen; Nicola Gökbuget; Guranda Chitadze; Anke Bergmann; Lorenz Bastian; Claudia D. Baldus; Gunnar Cario; Martin Schrappe; Stefan Schwartz; Julia Alten; Rolf Köhler; Monika Brüggemann
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Ultrasonic Aspiration-Acquired Glioblastoma Tissue Preserves Lymphocyte Phenotype and Viability, Supporting Its Use for Immunological Studies
errCANCERS
IF4.4
err2025-02-11
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errStavrakaki, Eftychia; Belcaid, Zineb; Balvers, Rutger K.; Vogelezang, Lisette B.; van den Bossche, Wouter B. L.; Alderliesten, Demi; Lila, Karishma; van den Bosch, Thierry P. P.; van Dongen, Jacques J. M.; Debets, Reno; Teodosio, Cristina; Dirven, Clemens M. F.; Lamfers, Martine L. M.
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Novel Flow Cytometric Antibody Panel and Dedicated Analysis Algorithm for Automated Fully Standardized Minimal Residual Disease Detection in Chronic Lymphocytic Leukemia
err2025-01-25
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errEngelmann, R; Flores-Montero, J; Schilperoord-Vermeulen, J; Ritgen, M; Hengeveld, PJ; Kohlscheen, S; Grigore, G; Rodriguez, RF; Lecrevisse, Q; Philippé, J; Villamor, N; Fernandez, P; Burgos, L; van Dongen, JJM; Orfao, A; Langerak, AW; Böttcher, S; EuroFlow Consortium
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Standardized flow cytometry for the detection and characterization of circulating CTCL cells: Update on a multicenter study
err2024-10-01
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PREAI
errde Bie, F. J.; van der Sluijs-Gelling, A. J.; Najidh, S.; Lau, C.; Orfao, A.; van Dongen, J. J. M.; Almeida, J.; Vermeer, M. H.
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A transcriptomic based deconvolution framework for assessing differentiation stages and drug responses of AML
err2024-05-18
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errKarakaslar, E. Onur; Severens, Jeppe F.; Sanchez-Lopez, Elena; van Veelen, Peter A.; Zlei, Mihaela; van Dongen, Jacques J. M.; Otte, Annemarie M.; Halkes, Constantijn J. M.; van Balen, Peter; Veelken, Hendrik; Reinders, Marcel J. T.; Griffioen, Marieke; van den Akker, Erik B.
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The gray area of RQ-PCR-based measurable residual disease: subdividing the positive, below quantitative range category
errLEUKEMIA
IF13.4
err2024-05-17
err3
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errKotrova, Michaela; Fronkova, Eva; Svaton, Michael; Drandi, Daniela; Schoen, Felix; Hoogeveen, Patricia; Hancock, Jeremy; Skotnicova, Aneta; Schilhabel, Anke; Eckert, Cornelia; Clappier, Emmanuelle; Cazzaniga, Gianni; Schaefer, Beat W.; van Dongen, Jacques J. M.; Ritgen, Matthias; Pott, Christiane; van der Velden, Vincent H. J.; Trka, Jan; Brueggemann, Monika
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Analysis of measurable residual disease by IG/TR gene rearrangements: quality assurance and updated EuroMRD guidelines
errLEUKEMIA
IF13.4
err2024-05-14
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errvan der Velden, Vincent H. J.; Dombrink, Isabel; Alten, Julia; Cazzaniga, Giovanni; Clappier, Emmanuelle; Drandi, Daniela; Eckert, Cornelia; Fronkova, Eva; Hancock, Jeremy; Kotrova, Michaela; Kraemer, Rebekka; Montonen, Mirkka; Pfeifer, Heike; Pott, Christiane; Raff, Thorsten; Trautmann, Heiko; Cave, Helene; Schaefer, Beat W.; van Dongen, Jacques J. M.; Trka, Jan; Brueggemann, Monika; van der Velden, Vincent H. J.; Raff, Thorsten; van Dongen, Jacques J. M.
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An autologous ex vivo model for exploring patient-specific responses to viro-immunotherapy in glioblastoma
err2024-03-01
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errStavrakaki, Eftychia; van den Bossche, Wouter B. L.; Vogelezang, Lisette B.; Teodosio, Cristina; Mustafa, Dana M.; van Dongen, Jacques J. M.; Dirven, Clemens M. F.; Balvers, Rutger K.; Lamfers, Martine L.
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In-depth blood immune profiling of Good syndrome patients
err2023-11-15
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errTorres-Valle, Alba; Aragon, Larraitz; Silva, Susana L.; Serrano, Cristina; Marcos, Miguel; Melero, Josefa; Bonroy, Carolien; Arenas-Caro, Pedro Pablo; Casado, David Monzon; Olaizola, Pedro Mikel Requejo; Neirinck, Jana; Hofmans, Mattias; de Arriba, Sonia; Jara, Maria; Prieto, Carlos; Sousa, Ana E.; Prada, Alvaro; van Dongen, Jacques J. M.; Perez-Andres, Martin; Orfao, Alberto
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Automated EuroFlow approach for standardized in-depth dissection of human circulating B-cells and plasma cells
err2023-10-17
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errDelgado, Alejandro H.; Fluxa, Rafael; Perez-Andres, Martin; Diks, Annieck M.; van Gaans van den Brink, Jacqueline A. M.; Barkoff, Alex-Mikael; Blanco, Elena; Torres-Valle, Alba; Berkowska, Magdalena A.; Grigore, Georgiana; van Dongen, J. . J. . M.; Orfao, Alberto
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Immune cell kinetics and antibody response in COVID-19 patients with low-count monoclonal B-cell lymphocytosis
err2023-10-04
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errOliva-Ariza, Guillermo; Fuentes-Herrero, Blanca; Lecrevisse, Quentin; Carbonell, Cristina; Perez-Pons, Alba; Torres-Valle, Alba; Pozo, Julio; Martin-Oterino, Jose angel; Gonzalez-Lopez, Oscar; Lopez-Bernus, Amparo; Bernal-Ribes, Marta; Belhassen-Garcia, Moncef; Perez-Escurza, Oihane; Perez-Andres, Martin; Vazquez, Lourdes; Hernandez-Perez, Guillermo; Garcia Palomo, Francisco Javier; Leoz, Pilar; Costa-Alba, Pilar; Perez-Losada, Elena; Yeguas, Ana; Santos Sanchez, Miryam; Garcia-Blazquez, Marta; Moran-Plata, F. Javier; Damasceno, Daniela; Botafogo, Vitor; Munoz-Garcia, Noemi; Fluxa, Rafael; van Dongen, Jacques J. M.; Marcos, Miguel; Almeida, Julia; Orfao, Alberto
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Baseline immunophenotypic profile of bone marrow leukemia cells in acute myeloid leukemia with nucleophosmin-1 gene mutation: a EuroFlow study
err2023-09-04
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errMatarraz, Sergio; Leoz, Pilar; Yeguas-Bermejo, Ana; van der Velden, Vincent; Bras, Anne E.; Gallego, Jose I. Sanchez; Lecrevisse, Quentin; Ayala-Bueno, Rosa; Teodosio, Cristina; Criado, Ignacio; Gonzalez-Gonzalez, Maria; Flores-Montero, Juan; Avendano, Alejandro; Vidriales, Maria B.; Chillon, Maria C.; Gonzalez, Teresa; Garcia-Sanz, Ramon; Conde, Maria I. Prieto; Villamor, Neus; Magnano, Laura; Colado, Enrique; Fernandez, Paula; Sonneveld, Edwin; Philippe, Jan; Reiterova, Michaela; Berrocal, Juan C. Caballero; Diaz-Galvez, Francisco J.; Ramos, Fernando; Valls, Julio Davila; Sanchez, Raquel Manjon; Tovar, Jackeline Solano; Calvo, Xavier; Alonso, Luis Garcia; Arenillas, Leonor; Alonso, Sara; Fonseca, Ariana; Caso, Covadonga Quiros; van Dongen, Jacques J. M.; Orfao, Alberto
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Technical alignment of standardized flow cytometry procedures among Cutaneous Lymphoma Working Groups (CLWGs) and EuroFlow centers: update on a Multicenter Study
err2023-09-01
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PREAI
errde Bie, Fenna; van der Sluijs-Gelling, Alita; Najidh, Safa; de Haan, Sanne; Flores-Montero, Juan; Orfao, Alberto; van Dongen, Jacques; Almeida, Julia; Vermeer, Maarten
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