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J

Jeremy L. Warner

legorreta cancer center

46H-index
604Paper Count
9.2KCitation Count
Published Papers 81
Publication Date
A deep learning model to predict glioma recurrence using integrated genomic and clinical data
err2025-08-19
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errJessica A. Patricoski-Chavez; Seema Nagpal; Ritambhara Singh; Jeremy L. Warner; Ece D. Gamsiz Uzun
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Summarizing clinical evidence utilizing large language models for cancer treatments: a blinded comparative analysis
err2025-04-29
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errRubinstein, Samuel; Mohsin, Aleenah; Banerjee, Rahul; Ma, Will; Mishra, Sanjay; Kwok, Mary; Yang, Peter; Warner, Jeremy L.; Cowan, Andrew J.
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Coronavirus Disease 2019 (COVID-19) Real World Data Infrastructure: A Big-Data Resource for Study of the Impact of COVID-19 in Patient Populations With Immunocompromising Conditions
err2025-01-23
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errCrawford, James M.; Penberthy, Lynne; Pinto, Ligia A.; Althoff, Keri N.; Assimon, Magdalene M.; Cohen, Oren; Gillim, Laura; Hammonds, Tracy L.; Kapur, Shilpa; Kaufman, Harvey W.; Kwasny, David; Liew, Jean W.; Meyer, William A.; Reynolds, Shannon L.; Schleicher, Cheryl B.; Subbiah, Suki; Theruviparampil, Catherine; Wallace, Zachary S.; Warner, Jeremy L.; Yoon, Suhyeon; Ziemba, Yonah C.
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Collaborative large language models for automated data extraction in living systematic reviews
err2025-01-21
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errKhan, Muhammad Ali; Ayub, Umair; Naqvi, Syed Arsalan Ahmed; Khakwani, Kaneez Zahra Rubab; Sipra, Zaryab bin Riaz; Raina, Ammad; Zhou, Sihan; He, Huan; Saeidi, Amir; Hasan, Bashar; Rumble, Robert Bryan; Bitterman, Danielle S.; Warner, Jeremy L.; Zou, Jia; Tevaarwerk, Amye J.; Leventakos, Konstantinos; Kehl, Kenneth L.; Palmer, Jeanne M.; Murad, Mohammad Hassan; Baral, Chitta; bin Riaz, Irbaz
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A New Era of Data-Driven Cancer Research and Care: Opportunities and Challenges
err2024-10-04
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errGomez, Felicia; Danos, Arpad M.; Del Fiol, Guilherme; Madabhushi, Anant; Tiwari, Pallavi; Mcmichael, Joshua F.; Bakas, Spyridon; Bian, Jiang; Davatzikos, Christos; Fertig, Elana J.; Kalpathy-Cramer, Jayashree; Kenney, Johanna; Savova, Guergana K.; Yetisgen, Meliha; Van Allen, Eliezer M.; Warner, Jeremy L.; Prior, Fred; Griffith, Malachi; Griffith, Obi L.
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Optimizing word embeddings for small dataset: a case study onpatient portal messages from breast cancer patients
err2024-07-12
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errSong, Qingyuan; Ni, Congning; Warner, Jeremy L.; Chen, Qingxia; Song, Lijun; Rosenbloom, S. Trent; Malin, Bradley A.; Yin, Zhijun
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Brief Report: Impact of Anti-Cancer Treatments on Outcomes of COVID-19 in Patients With Thoracic Cancers: A CCC19 Registry Analysis
err2024-07-01
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errKulkarni, Amit A.; Hennessy, Cassandra; Wilson, Grace; Ramesh, Vidhyalakshmi; Hwang, Clara; Awosika, Joy; Bakouny, Ziad; Khan, Hina; Vilar-Compte, Diana; McKay, Rana; Jani, Chinmay; Weissmann, Lisa; Griffiths, Elizabeth; Batist, Gerald; Bouganim, Nathaniel; Mavromatis, Blanche; Bashir, Babar; Nguyen, Ryan H.; Riess, Jonathan W.; Puc, Matthew; Kasi, Anup; Berg, Stephanie; Castillo, Dan Ran; Hayes-Lattin, Brandon; Hosmer, Wylie; Flora, Daniel; Mishra, Sanjay; French, Benjamin; Warner, Jeremy L.; Lopes, Gilberto; Peters, Solange; Florez, Narjust
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The evolving posology and administration of immune checkpoint inhibitors: subcutaneous formulations
err2024-07-01
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errHadfield, Matthew J.; Benjamin, David J.; Krell, Jonathan; Warner, Jeremy; Lythgoe, Mark P.
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Extracting Systemic Anticancer Therapy and Response Information From Clinical Notes Following the RECIST Definition
err2024-06-01
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PREAI
errZuo, Xu; Kumar, Ashok; Shen, Shuhan; Li, Jianfu; Cong, Grace; Jin, Edward; Chen, Qingxia; Warner, Jeremy L.; Yang, Ping; Xu, Hua
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The impact of cancer metastases on COVID-19 outcomes: A COVID-19 and Cancer Consortium registry-based retrospective cohort study
errCANCER
IF5.1
err2024-02-20
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PREAI
errCastellano, Cecilia A.; Sun, Tianyi; Ravindranathan, Deepak; Hwang, Clara; Balanchivadze, Nino; Singh, Sunny R. K.; Griffiths, Elizabeth A.; Puzanov, Igor; Ruiz-Garcia, Erika; Vilar-Compte, Diana; Cardenas-Delgado, Ana I.; McKay, Rana R.; Nonato, Taylor K.; Ajmera, Archana; Yu, Peter P.; Nadkarni, Rajani; O'Connor, Timothy E.; Berg, Stephanie; Ma, Kim; Farmakiotis, Dimitrios; Vieira, Kendra; Arvanitis, Panos; Saliby, Renee M.; Labaki, Chris; El Zarif, Talal; Wise-Draper, Trisha M.; Zamulko, Olga; Li, Ningjing; Bodin, Brianne E.; Accordino, Melissa K.; Ingham, Matthew; Joshi, Monika; Polimera, Hyma V.; Fecher, Leslie A.; Friese, Christopher R.; Yoon, James J.; Mavromatis, Blanche H.; Brown, Jacqueline T.; Russell, Karen; Nanchal, Rahul; Singh, Harpreet; Tachiki, Lisa; Moria, Feras A.; Nagaraj, Gayathri; Cortez, Kimberly; Abbasi, Saqib H.; Wulff-Burchfield, Elizabeth M.; Puc, Matthew; Weissmann, Lisa B.; Bhatt, Padmanabh S.; Mariano, Melissa G.; Mishra, Sanjay; Halabi, Susan; Beeghly, Alicia; Warner, Jeremy L.; French, Benjamin; Bilen, Mehmet A.
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Clinical characteristics, racial inequities, and outcomes in patients with breast cancer and COVID-19: A COVID-19 and cancer consortium (CCC19) cohort study
err2023-10-17
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errNagaraj, Gayathri; Vinayak, Shaveta; Khaki, Ali Raza; Sun, Tianyi; Kuderer, Nicole M.; Aboulafia, David M.; Acoba, Jared D.; Awosika, Joy; Bakouny, Ziad; Balmaceda, Nicole B.; Bao, Ting; Bashir, Babar; Berg, Stephanie; Bilen, Mehmet A.; Bindal, Poorva; Blau, Sibel; Bodin, Brianne E.; Borno, Hala T.; Castellano, Cecilia; Choi, Horyun; Deeken, John; Desai, Aakash; Edwin, Natasha; Feldman, Lawrence E.; Flora, Daniel B.; Friese, Christopher R.; Galsky, Matthew D.; Gonzalez, Cyndi J.; Grivas, Petros; Gupta, Shilpa; Haynam, Marcy; Heilman, Hannah; Hershman, Dawn L.; Hwang, Clara; Jani, Chinmay; Jhawar, Sachin R.; Joshi, Monika; Kaklamani, Virginia; Klein, Elizabeth J.; Knox, Natalie; Koshkin, Vadim S.; Kulkarni, Amit A.; Kwon, Daniel H.; Labaki, Chris; Lammers, Philip E.; Lathrop, Kate I.; Lewis, Mark A.; Li, Xuanyi; Lopes, Gilbert de Lima; Lyman, Gary H.; Makower, Della F.; Mansoor, Abdul-Hai; Markham, Merry-Jennifer; Mashru, Sandeep H.; Mckay, Rana R.; Messing, Ian; Mico, Vasil; Nadkarni, Rajani; Namburi, Swathi; Nguyen, Ryan H.; Nonato, Taylor Kristian; O'Connor, Tracey Lynn; Panagiotou, Orestis A.; Park, Kyu; Patel, Jaymin M.; Patel, Kanishka GopikaBimal; Peppercorn, Jeffrey; Polimera, Hyma; Puc, Matthew; Rao, Yuan James; Razavi, Pedram; Reid, Sonya A.; Riess, Jonathan W.; Rivera, Donna R.; Robson, Mark; Rose, Suzanne J.; Russ, Atlantis D.; Schapira, Lidia; Shah, Pankil K.; Shanahan, M. Kelly; Shapiro, Lauren C.; Smits, Melissa; Stover, Daniel G.; Streckfuss, Mitrianna; Tachiki, Lisa; Thompson, Michael A.; Tolaney, Sara M.; Weissmann, Lisa B.; Wilson, Grace; Wotman, Michael T.; Wulff-Burchfield, Elizabeth M.; Mishra, Sanjay; French, Benjamin; Warner, Jeremy L.; Lustberg, Maryam B.; Accordino, Melissa K.; Shah, Dimpy P.
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Analysis and Visualization of Longitudinal Genomic and Clinical Data from the AACR Project GENIE Biopharma Collaborative in cBioPortal
err2023-09-05
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errde Bruijn, Ino; Kundra, Ritika; Mastrogiacomo, Brooke; Tran, Thinh Ngoc; Sikina, Luke; Mazor, Tali; Li, Xiang; Ochoa, Angelica; Zhao, Gaofei; Lai, Bryan; Abeshouse, Adam; Baiceanu, Diana; Ciftci, Ersin; Dogrusoz, Ugur; Dufilie, Andrew; Erkoc, Ziya; Lara, Elena Garcia; Fu, Zhaoyuan; Gross, Benjamin; Haynes, Charles; Heath, Allison; Higgins, David; Jagannathan, Prasanna; Kalletla, Karthik; Kumari, Priti; Lindsay, James; Lisman, Aaron; Leenknegt, Bas; Lukasse, Pieter; Madela, Divya; Madupuri, Ramyasree; van Nierop, Pim; Plantalech, Oleguer; Quach, Joyce; Resnick, Adam C.; Rodenburg, Sander Y. A.; Satravada, Baby A.; Schaeffer, Fedde; Sheridan, Robert; Singh, Jessica; Sirohi, Rajat; Sumer, Selcuk Onur; van Hagen, Sjoerd; Wang, Avery; Wilson, Manda; Zhang, Hongxin; Zhu, Kelsey; Rusk, Nicole; Brown, Samantha; Lavery, Jessica A.; Panageas, Katherine S.; Rudolph, Julia E.; LeNoue-Newton, Michele L.; Warner, Jeremy L.; Guo, Xindi; Hunter-Zinck, Haley; Yu, Thomas V.; Pilai, Shirin; Nichols, Chelsea; Gardos, Stuart M.; Philip, John; Kehl, Kenneth L.; Riely, Gregory J.; Schrag, Deborah; Lee, Jocelyn; Fiandalo, Michael V.; Sweeney, Shawn M.; Pugh, Trevor J.; Sander, Chris; Cerami, Ethan; Gao, Jianjiong; Schultz, Nikolaus
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Burden of AML, 1990-2019: Estimates From the Global Burden of Disease Study
err2023-09-01
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errJani, Chinmay T.; Ahmed, Alaaeldin; Singh, Harpreet; Mouchati, Christian; Al Omari, Omar; Bhatt, Padmanabh S.; Sharma, Rajesh; Farooq, Minaam; Liu, Weitao; Shalhoub, Joseph; Marshall, Dominic; Salciccioli, Justin D.; Warner, Jeremy L.; Lam, Prudence
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DeepPhe-CR: Natural Language Processing Software Services for Cancer Registrar Case Abstraction
err2023-09-01
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errHochheiser, Harry; Finan, Sean; Yuan, Zhou; Durbin, Eric B.; Jeong, Jong Cheol; Hands, Isaac; Rust, David; Kavuluru, Ramakanth; Wu, Xiao-Cheng; Warner, Jeremy L.; Savova, Guergana
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An End-to-End Natural Language Processing System for Automatically Extracting Radiation Therapy Events From Clinical Texts
err2023-09-01
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errBitterman, Danielle S.; Goldner, Eli; Finan, Sean; Harris, David; Durbin, Eric B.; Hochheiser, Harry; Warner, Jeremy L.; Mak, Raymond H.; Miller, Timothy; Savova, Guergana K.
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Learning lessons from the COVID-19 pandemic for real-world evidence research in oncologydshared perspectives from international consortia
err2023-08-01
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errCastelo-Branco, L.; Lee, R.; Brandao, M.; Cortellini, A.; Freitas, A.; Garassino, M.; Geukens, T.; Grivas, P.; Halabi, S.; Oliveira, J.; Pinato, D. J.; Ribeiro, J.; Peters, S.; Pentheroudakis, G.; Warner, J. L.; Romano, E.
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Factors Associated With Altmetric Attention Scores for Randomized Phase III Cancer Clinical Trials
err2023-08-01
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PREAI
errRooney, Michael K.; Sharifi, Bahareh; Ludmir, Ethan B.; Fuller, Clifton D.; Warner, Jeremy L.
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Natural Language Processing to Automatically Extract the Presence and Severity of Esophagitis in Notes of Patients Undergoing Radiotherapy
err2023-07-01
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errChen, Shan; Guevara, Marco; Ramirez, Nicolas; Murray, Arpi; Warner, Jeremy L.; Aerts, Hugo J. W. L.; Miller, Timothy A.; Savova, Guergana K.; Mak, Raymond H.; Bitterman, Danielle S.
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Genomic characteristics and clinical outcomes of early onset colorectal cancer (EOCRC): Findings from AACR Project GENIE Biopharma Collaborative registry
err2023-04-04
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PREAI
errGarcia, Enrique Sanz; Chen, Eric; Giannakis, Marios; Riely, Gregory J.; Warner, Jeremy L.; LeNoue-Newton, Michele L.; Weiss, Jessica; Hueniken, Katrina; Kehl, Kenneth L.; Schrag, Deborah; Cercek, Andrea; Ng, Kimmie
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