Not logged inDeep Learning Reconstruction for 7T MP2RAGE and SPACE MRI: Improving Image Quality at High Acceleration Factors
Liu, Zeyu; Patel, Vishal; Zhou, Xiangzhi; Tao, Shengzhen; Yu, Thomas; Ma, Jun; Nickel, Dominik; Liebig, Patrick; Westerhold, Erin M.; Mojahed, Hamed; Gupta, Vivek; Middlebrooks, Erik H. .png)
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SaveShare Save Community assessment of methods to deconvolve cellular composition from bulk gene expressionWhite, Brian S.; de Reynies, Aurelien; Newman, Aaron M.; Waterfall, Joshua J.; Lamb, Andrew; Petitprez, Florent; Lin, Yating; Yu, Rongshan; Guerrero-Gimenez, Martin E.; Domanskyi, Sergii; Monaco, Gianni; Chung, Verena; Banerjee, Jineta; Derrick, Daniel; Valdeolivas, Alberto; Li, Haojun; Xiao, Xu; Wang, Shun; Zheng, Frank; Yang, Wenxian; Catania, Carlos A.; Lang, Benjamin J.; Bertus, Thomas J.; Piermarocchi, Carlo; Caruso, Francesca P.; Ceccarelli, Michele; Yu, Thomas; Guo, Xindi; Bletz, Julie; Coller, John; Maecker, Holden; Duault, Caroline; Shokoohi, Vida; Patel, Shailja; Liliental, Joanna E.; Simon, Stockard; Saez-Rodriguez, Julio; Heiser, Laura M.; Guinney, Justin; Gentles, Andrew J. Share Save A community challenge to predict clinical outcomes after immune checkpoint blockade in non-small cell lung cancerMason, Mike; Lapuente-Santana, Oscar; Halkola, Anni S.; Wang, Wenyu; Mall, Raghvendra; Xiao, Xu; Kaufman, Jacob; Fu, Jingxin; Pfeil, Jacob; Banerjee, Jineta; Chung, Verena; Chang, Han; Chasalow, Scott D.; Lin, Hung Ying; Chai, Rongrong; Yu, Thomas; Finotello, Francesca; Mirtti, Tuomas; Mayranpaa, Mikko I.; Bao, Jie; Verschuren, Emmy W.; Ahmed, Eiman I.; Ceccarelli, Michele; Miller, Lance D.; Monaco, Gianni; Hendrickx, Wouter R. L.; Sherif, Shimaa; Yang, Lin; Tang, Ming; Gu, Shengqing Stan; Zhang, Wubing; Zhang, Yi; Zeng, Zexian; Das Sahu, Avinash; Liu, Yang; Yang, Wenxian; Bedognetti, Davide; Tang, Jing; Eduati, Federica; Laajala, Teemu D.; Geese, William J.; Guinney, Justin; Szustakowski, Joseph D.; Vincent, Benjamin G.; Carbone, David P. Share Save Phase I/II study of bavdegalutamide, a PROTAC androgen receptor (AR) degrader in metastatic castration-resistant prostate cancer (mCRPC): Radiographic progression-free survival (rPFS) in patients (pts) with AR ligand-binding domain (LBD) mutationsPetrylak, D. P.; Garmezy, B.; Shen, J.; Kalebasty, A. Rezazadeh; Sartor, O.; Dreicer, R.; Agarwal, N.; Hussain, M.; Percent, I.; Heath, E.; Gedrich, R.; Yu, T.; Healey, D.; Parameswaran, J.; Sternberg, C. N.; Gao, X. Share Save Analysis and Visualization of Longitudinal Genomic and Clinical Data from the AACR Project GENIE Biopharma Collaborative in cBioPortalde Bruijn, Ino; Kundra, Ritika; Mastrogiacomo, Brooke; Tran, Thinh Ngoc; Sikina, Luke; Mazor, Tali; Li, Xiang; Ochoa, Angelica; Zhao, Gaofei; Lai, Bryan; Abeshouse, Adam; Baiceanu, Diana; Ciftci, Ersin; Dogrusoz, Ugur; Dufilie, Andrew; Erkoc, Ziya; Lara, Elena Garcia; Fu, Zhaoyuan; Gross, Benjamin; Haynes, Charles; Heath, Allison; Higgins, David; Jagannathan, Prasanna; Kalletla, Karthik; Kumari, Priti; Lindsay, James; Lisman, Aaron; Leenknegt, Bas; Lukasse, Pieter; Madela, Divya; Madupuri, Ramyasree; van Nierop, Pim; Plantalech, Oleguer; Quach, Joyce; Resnick, Adam C.; Rodenburg, Sander Y. A.; Satravada, Baby A.; Schaeffer, Fedde; Sheridan, Robert; Singh, Jessica; Sirohi, Rajat; Sumer, Selcuk Onur; van Hagen, Sjoerd; Wang, Avery; Wilson, Manda; Zhang, Hongxin; Zhu, Kelsey; Rusk, Nicole; Brown, Samantha; Lavery, Jessica A.; Panageas, Katherine S.; Rudolph, Julia E.; LeNoue-Newton, Michele L.; Warner, Jeremy L.; Guo, Xindi; Hunter-Zinck, Haley; Yu, Thomas V.; Pilai, Shirin; Nichols, Chelsea; Gardos, Stuart M.; Philip, John; Kehl, Kenneth L.; Riely, Gregory J.; Schrag, Deborah; Lee, Jocelyn; Fiandalo, Michael V.; Sweeney, Shawn M.; Pugh, Trevor J.; Sander, Chris; Cerami, Ethan; Gao, Jianjiong; Schultz, Nikolaus Share Save AACR Project GENIE: 100,000 Cases and BeyondPugh, Trevor J.; Bell, Jonathan L.; Bruce, Jeff P.; Doherty, Gary J.; Galvin, Matthew; Green, Michelle F.; Hunter-Zinck, Haley; Kumari, Priti; Lenoue-Newton, Michele L.; Li, Marilyn M.; Lindsay, James; Mazor, Tali; Ovalle, Andrea; Sammut, Stephen-John; Schultz, Nikolaus; Yu, Thomas, V; Sweeney, Shawn M.; Bernard, Brady Share Save A Fetal Brain magnetic resonance Acquisition Numerical phantom (FaBiAN)Lajous, Helene; Roy, Christopher W.; Hilbert, Tom; de Dumast, Priscille; Tourbier, Sebastien; Aleman-Gomez, Yasser; Yerly, Jerome; Yu, Thomas; Kebiri, Hamza; Payette, Kelly; Ledoux, Jean-Baptiste; Meuli, Reto; Hagmann, Patric; Jakab, Andras; Dunet, Vincent; Koob, Meriam; Kober, Tobias; Stuber, Matthias; Cuadra, Meritxell Bach Share Save A Scalable Quality Assurance Process for Curating Oncology Electronic Health Records: The Project GENIE Biopharma Collaborative ApproachLavery, Jessica A.; Lepisto, Eva M.; Brown, Samantha; Rizvi, Hira; McCarthy, Caroline; LeNoue-Newton, Michele; Yu, Celeste; Lee, Jasme; Guo, Xindi; Yu, Thomas; Rudolph, Julia; Sweeney, Shawn; Park, Ben Ho; Warner, Jeremy L.; Bedard, Philippe L.; Riely, Gregory; Schrag, Deborah; Panageas, Katherine S. Share Save Share Save Cell-to-cell and type-to-type heterogeneity of signaling networks: insights from the crowdGabor, Attila; Tognetti, Marco; Driessen, Alice; Tanevski, Jovan; Guo, Baosen; Cao, Wencai; Shen, He; Yu, Thomas; Chung, Verena; Bodenmiller, Bernd; Saez-Rodriguez, Julio Share Save A Continuously Benchmarked and Crowdsourced Challenge for Rapid Development and Evaluation of Models to Predict COVID-19 Diagnosis and HospitalizationYan, Yao; Schaffter, Thomas; Bergquist, Timothy; Yu, Thomas; Prosser, Justin; Aydin, Zafer; Jabeer, Amhar; Brugere, Ivan; Gao, Jifan; Chen, Guanhua; Causey, Jason; Yao, Yuxin; Bryson, Kevin; Long, Dustin R.; Jarvik, Jeffrey G.; Lee, Christoph, I; Wilcox, Adam; Guinney, Justin; Mooney, Sean Share Save Benchmarked approaches for reconstruction of in vitro cell lineages and in silico models of C. elegans and M. musculus developmental treesGong, Wuming; Granados, Alejandro A.; Hu, Jingyuan; Jones, Matthew G.; Raz, Ofir; Salvador-Martinez, Irepan; Zhang, Hanrui; Chow, Ke-Huan K.; Kwak, Il-Youp; Retkute, Renata; Prusokiene, Alisa; Prusokas, Augustinas; Khodaverdian, Alex; Zhang, Richard; Rao, Suhas; Wang, Robert; Rennert, Phil; Saipradeep, Vangala G.; Sivadasan, Naveen; Rao, Aditya; Joseph, Thomas; Srinivasan, Rajgopal; Peng, Jiajie; Han, Lu; Shang, Xuequn; Garry, Daniel J.; Yu, Thomas; Chung, Verena; Mason, Michael; Liu, Zhandong; Guan, Yuanfang; Yosef, Nir; Shendure, Jay; Telford, Maximilian J.; Shapiro, Ehud; Elowitz, Michael B.; Meyer, Pablo Share Save A community challenge to evaluate RNA-seq, fusion detection, and isoform quantification methods for cancer discoveryCreason, Allison; Haan, David; Dang, Kristen; Chiotti, Kami E.; Inkman, Matthew; Lamb, Andrew; Yu, Thomas; Hu, Yin; Norman, Thea C.; Buchanan, Alex; van Baren, Marijke J.; Spangler, Ryan; Rollins, M. Rick; Spellman, Paul T.; Rozanov, Dmitri; Zhang, Jin; Maher, Christopher A.; Caloian, Cristian; Watson, John D.; Uhrig, Sebastian; Haas, Brian J.; Jain, Miten; Akeson, Mark; Ahsen, Mehmet Eren; Stolovitzky, Gustavo; Guinney, Justin; Boutros, Paul C.; Stuart, Joshua M.; Ellrott, Kyle Share Save Crowdsourcing assessment of maternal blood multi-omics for predicting gestational age and preterm birthTarca, Adi L.; Pataki, Balint Armin; Romero, Roberto; Sirota, Marina; Guan, Yuanfang; Kutum, Rintu; Gomez-Lopez, Nardhy; Done, Bogdan; Bhatti, Gaurav; Yu, Thomas; Andreoletti, Gaia; Chaiworapongsa, Tinnakorn; Hassan, Sonia S.; Hsu, Chaur-Dong; Aghaeepour, Nima; Stolovitzky, Gustavo; Csabai, Istvan; Costello, James C. Share Save Share Save Model-informed machine learning for multi-component T-2 relaxometryYu, Thomas; Jorge Canales-Rodriguez, Erick; Pizzolato, Marco; Piredda, Gian Franco; Hilbert, Tom; Fischi-Gomez, Elda; Weigel, Matthias; Barakovic, Muhamed; Cuadra, Meritxell Bach; Granziera, Cristina; Kober, Tobias; Thiran, Jean-Philippe Share Save Comparison of non-parametric T2 relaxometry methods for myelin water quantificationJorge Canales-Rodriguez, Erick; Pizzolato, Marco; Franco Piredda, Gian; Hilbert, Tom; Kunz, Nicolas; Pot, Caroline; Yu, Thomas; Salvador, Raymond; Pomarol-Clotet, Edith; Kober, Tobias; Thiran, Jean-Philippe; Daducci, Alessandro Share Save Linked Entity Attribute Pair (LEAP): A Harmonization Framework for Data PoolingThomas, Stacy; Lichtenberg, Tara; Dang, Kristen; Fitzsimons, Michael; Grossman, Robert L.; Kundra, Ritika; Lavery, Jessica A.; Lenoue-Newton, Michele L.; Panageas, Katherine S.; Sawyers, Charles; Schultz, Nikolaus D.; Sirintrapun, Sahussapont J.; Topaloglu, Umit; Welch, Angelica; Yu, Thomas; Zehir, Ahmet; Gardos, Stuart Share Save Gene selection for optimal prediction of cell position in tissues from single-cell transcriptomics dataTanevski, Jovan; Thin Nguyen; Truong, Buu; Karaiskos, Nikos; Ahsen, Mehmet Eren; Zhang, Xinyu; Chang Shu; Ke Xu; Liang, Xiaoyu; Ying Hu; Pham, Hoang V. V.; Li Xiaomei; Le, Thuc D.; Tarca, Adi L.; Bhatti, Gaurav; Romero, Roberto; Karathanasis, Nestoras; Loher, Phillipe; Yang Chen; Ouyang, Zhengqing; Mao, Disheng; Zhang, Yuping; Zand, Maryam; Ruan, Jianhua; Hafemeister, Christoph; Peng Qiu; Duc Tran; Tin Nguyen; Gabor, Attila; Yu, Thomas; Guinney, Justin; Glaab, Enrico; Krause, Roland; Banda, Peter; Stolovitzky, Gustavo; Rajewsky, Nikolaus; Saez-Rodriguez, Julio; Meyer, Pablo Share Save 
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