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C

Carolina Wählby

uppsala university

38H-index
241Paper Count
6.0KCitation Count
Published Papers 42
Publication Date
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Roadmap on deep learning for microscopy
errjournal of physics: photonics
IF0
err2026-01-29
err0
errOAAI
errGiovanni Volpe; Carolina Wählby; Lei Tian; Michael Hecht; Artur Yakimovich; Kristina Monakhova; Laura Waller; Ivo F Sbalzarini; Christopher A Metzler; Mingyang Xie; Kevin Zhang; Isaac C D Lenton; Halina Rubinsztein-Dunlop; Daniel Brunner; Bijie Bai; Aydogan Ozcan; Daniel Midtvedt; Hao Wang; Tongyu Li; Nataša Sladoje; Joakim Lindblad; Jason T Smith; Marien Ochoa; Margarida Barroso; Xavier Intes; Tong Qiu; Li-Yu Yu; Sixian You; Yongtao Liu; Maxim A Ziatdinov; Sergei V Kalinin; Arlo Sheridan; Uri Manor; Elias Nehme; Ofri Goldenberg; Yoav Shechtman; Henrik K Moberg; Christoph Langhammer; Barbora Špačková; Saga Helgadottir; Benjamin Midtvedt; Aykut Argun; Tobias Thalheim; Frank Cichos; Stefano Bo; Lars Hubatsch; Jesus Pineda; Carlo Manzo; Harshith Bachimanchi; Erik Selander; Antoni Homs-Corbera; Martin Fränzl; Kevin de Haan; Yair Rivenson; Zofia Korczak; Caroline Beck Adiels; Mite Mijalkov; Dániel Veréb; Yu-Wei Chang; Joana B Pereira; Damian Matuszewski; Gustaf Kylberg; Ida-Maria Sintorn; Juan C Caicedo; Beth A Cimini; Muyinatu A Lediju Bell; Bruno M Saraiva; Guillaume Jacquemet; Ricardo Henriques; Wei Ouyang; Trang Le; Estibaliz Gómez-de-Mariscal; Daniel Sage; Arrate Muñoz-Barrutia; Ebba Josefson Lindqvist; Johanna Bergman
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Rapid label-free identification of seven bacterial species using microfluidics, single-cell time-lapse phase-contrast microscopy, and deep learning-based image and video classification
errPLOS ONE
IF2.6
err2025-09-08
err1
errOAAI
errHallstrom, Erik; Kandavalli, Vinodh; Wahlby, Carolina; Hast, Anders
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errSave
Culture-free detection of bacteria from blood for rapid sepsis diagnosis
errnpj Digital Medicine
IF15.1
err2025-08-25
err0
errOAAI
errM. Henar Marino Miguélez; Mohammad Osaid; Erik Hallström; Kerem Kaya; Jimmy Larsson; Vinodh Kandavalli; Carolina Wählby; Johan Elf; Wouter van der Wijngaart
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Spatial Transcriptome Mapping of the Desmoplastic Growth Pattern of Colorectal Liver Metastases by In Situ Sequencing Reveals a Biologically Relevant Zonation of the Desmoplastic Rim
errCLINICAL CANCER RESEARCH
IF10.2
err2024-07-25
err1
errOAAI
errAndersson, Axel; Escriva Conde, Maria; Surova, Olga; Vermeulen, Peter; Wahlby, Carolina; Nilsson, Mats; Nystrom, Hanna
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errSave
DEPICTER: Deep representation clustering for histology annotation
errCOMPUTERS IN BIOLOGY AND MEDICINE
IF6.3
err2024-03-01
err0
errOAAI
errChelebian, Eduard; Avenel, Chirstophe; Ciompi, Francesco; Waehlby, Carolina
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errSave
TissUUmaps 3: Improvements in interactive visualization, exploration, and quality assessment of large-scale spatial omics data
errHELIYON
IF3.6
err2023-05-01
err15
errOAAI
errPielawski, Nicolas; Andersson, Axel; Avenel, Christophe; Behanova, Andrea; Chelebian, Eduard; Klemm, Anna; Nysjo, Fredrik; Solorzano, Leslie; Wahlby, Carolina
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A topographic atlas defines developmental origins of cell heterogeneity in the human embryonic lung
errNATURE CELL BIOLOGY
IF19.1
err2023-01-16
err20
errOAAI
errSountoulidis, Alexandros; Marco Salas, Sergio; Braun, Emelie; Avenel, Christophe; Bergenstrahle, Joseph; Theelke, Jonas; Vicari, Marco; Czarnewski, Paulo; Liontos, Andreas; Abalo, Xesus; Andrusivova, Zaneta; Mirzazadeh, Reza; Asp, Michaela; Li, Xiaofei; Hu, Lijuan; Sariyar, Sanem; Martinez Casals, Anna; Ayoglu, Burcu; Firsova, Alexandra; Michaelsson, Jakob; Lundberg, Emma; Waehlby, Carolina; Sundstroem, Erik; Linnarsson, Sten; Lundeberg, Joakim; Nilsson, Mats; Samakovlis, Christos
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SimSearch: A Human-in-The-Loop Learning Framework for Fast Detection of Regions of Interest in Microscopy Images
errIEEE JOURNAL OF BIOMEDICAL AND HEALTH INFORMATICS
IF6.8
err2022-08-01
err7
errOAAI
errGupta, Ankit; Sabirsh, Alan; Wahlby, Carolina; Sintorn, Ida-Maria
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errSave
Automated detection of vascular remodeling in tumor-draining lymph nodes by the deep-learning tool HEV-finder
errJOURNAL OF PATHOLOGY
IF5.2
err2022-07-12
err1
errOAAI
errBekkhus, Tove; Avenel, Christophe; Hanna, Sabella; Boger, Mathias Franzen; Klemm, Anna; Bacovia, Daniel Vasiliu; Warnberg, Fredrik; Wahlby, Carolina; Ulvmar, Maria H.
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errSave
Spatial Statistics for Understanding Tissue Organization
errFRONTIERS IN PHYSIOLOGY
IF3.4
err2022-01-28
err7
errOAAI
errBehanova, Andrea; Klemm, Anna; Waehlby, Carolina
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errSave
Improved breast cancer histological grading using deep learning
errANNALS OF ONCOLOGY
IF65.4
err2022-01-01
err92
errOAAI
errWang, Y.; Acs, B.; Robertson, S.; Liu, B.; Solorzano, L.; Wahlby, C.; Hartman, J.; Rantalainen, M.
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errSave
Genes in human obesity loci are causal obesity genes in C. elegans
errPLOS GENETICS
IF3.7
err2021-09-07
err21
errOAAI
errKe, Wenfan; Reed, Jordan N.; Yang, Chenyu; Higgason, Noel; Rayyan, Leila; Waehlby, Carolina; Carpenter, Anne E.; Civelek, Mete; O'Rourke, Eyleen J.
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Artificial Intelligence for Diagnosis and Gleason Grading of Prostate Cancer in Biopsies-Current Status and Next Steps
errEUROPEAN UROLOGY FOCUS
IF5.6
err2021-07-01
err25
errOAAI
errKartasalo, Kimmo; Bulten, Wouter; Delahunt, Brett; Chen, Po-Hsuan Cameron; Pinckaers, Hans; Olsson, Henrik; Ji, Xiaoyi; Mulliqi, Nita; Samaratunga, Hemamali; Tsuzuki, Toyonori; Lindberg, Johan; Rantalainen, Mattias; Wahlby, Carolina; Litjens, Geert; Ruusuvuori, Pekka; Egevad, Lars; Eklund, Martin
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errSave
Rapid development of cloud-native intelligent data pipelines for scientific data streams using the HASTE Toolkit
errGIGASCIENCE
IF3.9
err2021-03-19
err1
errOAAI
errBlamey, Ben; Toor, Salman; Dahlo, Martin; Wieslander, Hakan; Harrison, Philip J.; Sintorn, Ida-Maria; Sabirsh, Alan; Wahlby, Carolina; Spjuth, Ola; Hellander, Andreas
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errSave
Towards Automatic Protein Co-Expression Quantification in Immunohistochemical TMA Slides
errIEEE JOURNAL OF BIOMEDICAL AND HEALTH INFORMATICS
IF6.8
err2021-02-01
err6
errOAAI
errSolorzano, Leslie; Pereira, Carla; Martins, Diana; Almeida, Raquel; Carneiro, Fatima; Almeida, Gabriela M.; Oliveira, Carla; Wahlby, Carolina
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errSave
Deep Learning With Conformal Prediction for Hierarchical Analysis of Large-Scale Whole-Slide Tissue Images
errIEEE JOURNAL OF BIOMEDICAL AND HEALTH INFORMATICS
IF6.8
err2021-02-01
err18
errOAAI
errWieslander, Hakan; Harrison, Philip J.; Skogberg, Gabriel; Jackson, Sonya; Friden, Markus; Karlsson, Johan; Spjuth, Ola; Wahlby, Carolina
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errSave
Spage2vec: Unsupervised representation of localized spatial gene expression signatures
errFEBS JOURNAL
IF4.2
err2020-10-11
err32
errOAAI
errPartel, Gabriele; Wahlby, Carolina
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errSave
Regular Use of Depot Medroxyprogesterone Acetate Causes Thinning of the Superficial Lining and Apical Distribution of Human Immunodeficiency Virus Target Cells in the Human Ectocervix
errJOURNAL OF INFECTIOUS DISEASES
IF4.5
err2020-08-11
err22
errOAAI
errEdfeldt, Gabriella; Lajoie, Julie; Rohl, Maria; Oyugi, Julius; Ahlberg, Alexandra; Khalilzadeh-Binicy, Behnaz; Bradley, Frideborg; Mack, Matthias; Kimani, Joshua; Omollo, Kenneth; Wahlby, Carolina; Fowke, Keith R.; Broliden, Kristina; Tjernlund, Annelie
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errSave
Impact of Q-Griffithsin anti-HIV microbicide gel in non-human primates: In situ analyses of epithelial and immune cell markers in rectal mucosa
errSCIENTIFIC REPORTS
IF3.9
err2019-12-02
err18
errOAAI
errGunaydin, Gokce; Edfeldt, Gabriella; Garber, David A.; Asghar, Muhammad; Noel-Romas, Laura; Burgener, Adam; Wahlby, Carolina; Wang, Lin; Rohan, Lisa C.; Guenthner, Patricia; Mitchell, James; Matoba, Nobuyuki; McNicholl, Janet M.; Palmer, Kenneth E.; Tjernlund, Annelie; Broliden, Kristina
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errSave
Zebrafish Larvae as a Model System for High-throughput, Image-based Genetic Screens in Dyslipidemia and Atherosclerosis
errARTERIOSCLEROSIS THROMBOSIS AND VASCULAR BIOLOGY
IF7.4
err2018-05-01
err0
PREAI
errBandaru, Manoj; von der Heyde, Benedikt; Emmanouilidou, Anastasia; Ranefall, Petter; Allalou, Amin; Brooke, Hannah; Larsson, Anders; Wahlby, Carolina; Ingelsson, Erik; den Hoed, Marcel
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Research Directions

No research directions
Co-authors
Cooperation Journals
E
Erik Ingelsson
H-index: 137 · Papers: 675
F
Frederick M. Ausubel
H-index: 129 · Papers: 410
S
Sergei V. Kalinin
H-index: 109 · Papers: 1.6K
G
Gary Ruvkun
H-index: 103 · Papers: 295
M
Matthias Mack
H-index: 101 · Papers: 419
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