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R

Ryan Snyder

Rutgers University

5H-index
12Paper Count
119Citation Count
Published Papers 6
Publication Date
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Recent Developments in Amber Biomolecular Simulations
errJournal of Chemical Information and Modeling
IF5.3
err2025-07-29
err0
errOAAI
errDavid A. Case; David S. Cerutti; Vinícius Wilian D. Cruzeiro; Thomas A. Darden; Robert E. Duke; Mahdieh Ghazimirsaeed; George M. Giambaşu; Timothy J. Giese; Andreas W. Götz; Julie A. Harris; Koushik Kasavajhala; Tai-Sung Lee; Zhen Li; Charles Lin; Jian Liu; Yinglong Miao; Romelia Salomon-Ferrrer; Jana Shen; Ryan Snyder; Jason Swails; Ross C. Walker; Jinan Wang; Xiongwu Wu; Jinzhe Zeng; Thomas E. Cheatham III; Daniel R. Roe; Adrian Roitberg; Carlos Simmerling; Darrin M. York; Maria C. Nagan; Kenneth M. Merz Jr.
errShare
errSave
FE-ToolKit: A Versatile Software Suite for Analysis of High-Dimensional Free Energy Surfaces and Alchemical Free Energy Networks
errJOURNAL OF CHEMICAL INFORMATION AND MODELING
IF5.3
err2025-05-21
err0
errOAAI
errGiese, Timothy J.; Snyder, Ryan; Piskulich, Zeke; Barletta, German P.; Zhang, Shi; McCarthy, Erika; Ekesan, Solen; York, Darrin M.
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errSave
Training machine learning potentials for reactive systems: A Colab tutorial on basic models
errJOURNAL OF COMPUTATIONAL CHEMISTRY
IF4.8
err2023-12-11
err4
PREAI
errPan, Xiaoliang; Snyder, Ryan; Wang, Jia-Ning; Lander, Chance; Wickizer, Carly; Van, Richard; Chesney, Andrew; Xue, Yuanfei; Mao, Yuezhi; Mei, Ye; Pu, Jingzhi; Shao, Yihan
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errSave
Bridging semiempirical and ab initio QM/MM potentials by Gaussian process regression and its sparse variants for free energy simulation
errJOURNAL OF CHEMICAL PHYSICS
IF3.1
err2023-08-02
err14
PREAI
errSnyder, Ryan; Kim, Bryant; Pan, Xiaoliang; Shao, Yihan; Pu, Jingzhi
errShare
errSave
Reaction Path-Force Matching in Collective Variables: Determining Ab Initio QM/MM Free Energy Profiles by Fitting Mean Force
errJOURNAL OF CHEMICAL THEORY AND COMPUTATION
IF5.5
err2021-07-20
err16
errOAAI
errKim, Bryant; Snyder, Ryan; Nagaraju, Mulpuri; Zhou, Yan; Ojeda-May, Pedro; Keeton, Seth; Hege, Mellisa; Shao, Yihan; Pu, Jingzhi
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errSave
Replica Exchange Umbrella Sampling Simulations Provide Insight into the Role of Docosahexaenoic Acid in Modulating the Stability of Transmembrane Proteins
errBIOPHYSICAL JOURNAL
IF3.1
err2014-01-01
err1
errOAAI
errSnyder, Ryan; Wang, Bo; Roark, Matthew; Feller, Scott E.
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errSave

Research Directions

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Co-authors
Cooperation Journals
D
David A. Case
H-index: 107 · Papers: 518
K
Kenneth M. Merz
H-index: 83 · Papers: 691
T
Thomas E. Cheatham
H-index: 68 · Papers: 288
A
Adrián E. Roitberg
H-index: 64 · Papers: 321
D
Darrin M. York
H-index: 62 · Papers: 330
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