Not logged in Community assessment of methods to deconvolve cellular composition from bulk gene expression (vol 15, 7362, 2024) White, Brian S.; de Reynies, Aurelien; Newman, Aaron M.; Waterfall, Joshua J.; Lamb, Andrew; Yu, Rongshan; Guerrero-Gimenez, Martin E.; Domanskyi, Sergii; Monaco, Gianni; Chung, Verena; Banerjee, Jineta; Derrick, Daniel; Valdeolivas, Alberto; Li, Haojun; Xiao, Xu; Wang, Shun; Zheng, Frank; Yang, Wenxian; Catania, Carlos A.; Lang, Benjamin J.; Bertus, Thomas J.; Piermarocchi, Carlo; Caruso, Francesca P.; Ceccarelli, Michele; Yu, Thomas; Guo, Xindi; Bletz, Julie; Coller, John; Maecker, Holden; Duault, Caroline; Shokoohi, Vida; Patel, Shailja; Liliental, Joanna E.; Simon, Stockard; Saez-Rodriguez, Julio; Heiser, Laura M.; Guinney, Justin; Gentles, Andrew J. Share Save
Enhlink infers distal and context-specific enhancer-promoter linkages Poirion, Olivier B.; Zuo, Wulin; Spruce, Catrina; Baker, Candice N.; Daigle, Sandra L.; Olson, Ashley; Skelly, Daniel A.; Chesler, Elissa J.; Baker, Christopher L.; White, Brian S. Share Save
Community assessment of methods to deconvolve cellular composition from bulk gene expression White, Brian S.; de Reynies, Aurelien; Newman, Aaron M.; Waterfall, Joshua J.; Lamb, Andrew; Petitprez, Florent; Lin, Yating; Yu, Rongshan; Guerrero-Gimenez, Martin E.; Domanskyi, Sergii; Monaco, Gianni; Chung, Verena; Banerjee, Jineta; Derrick, Daniel; Valdeolivas, Alberto; Li, Haojun; Xiao, Xu; Wang, Shun; Zheng, Frank; Yang, Wenxian; Catania, Carlos A.; Lang, Benjamin J.; Bertus, Thomas J.; Piermarocchi, Carlo; Caruso, Francesca P.; Ceccarelli, Michele; Yu, Thomas; Guo, Xindi; Bletz, Julie; Coller, John; Maecker, Holden; Duault, Caroline; Shokoohi, Vida; Patel, Shailja; Liliental, Joanna E.; Simon, Stockard; Saez-Rodriguez, Julio; Heiser, Laura M.; Guinney, Justin; Gentles, Andrew J. Share Save
A Pan-Cancer Patient-Derived Xenograft Histology Image Repository with Genomic and Pathologic Annotations Enables Deep Learning Analysis White, Brian S.; Woo, Xing Yi; Koc, Soner; Sheridan, Todd; Neuhauser, Steven B.; Wang, Shidan; Evrard, Yvonne A.; Chen, Li; Pour, Ali Foroughi; Landua, John D.; Mashl, R. Jay; Davies, Sherri R.; Fang, Bingliang; Rosa, Maria Gabriela; Evans, Kurt W.; Bailey, Matthew H.; Chen, Yeqing; Xiao, Min; Rubinstein, Jill C.; Sanderson, Brian J.; Lloyd, Michael W.; Domanskyi, Sergii; Dobrolecki, Lacey E.; Fujita, Maihi; Fujimoto, Junya; Xiao, Guanghua; Fields, Ryan C.; Mudd, Jacqueline L.; Xu, Xiaowei; Hollingshead, Melinda G.; Jiwani, Shahanawaz; Acevedo, Saul; Davis-Dusenbery, Brandi N.; Robinson, Peter N.; Moscow, Jeffrey A.; Doroshow, James H.; Mitsiades, Nicholas; Kaochar, Salma; Pan, Chong-xian; Carvajal-Carmona, Luis G.; Welm, Alana L.; Welm, Bryan E.; Govindan, Ramaswamy; Li, Shunqiang; Davies, Michael A.; Roth, Jack A.; Meric-Bernstam, Funda; Xie, Yang; Herlyn, Meenhard; Ding, Li; Lewis, Michael T.; Bult, Carol J.; Dean II, Dennis A.; Chuang, Jeffrey H. Share Save
A pan-cancer PDX histology image repository with genomic and pathological annotations for deep learning analysis White, Brian S.; Woo, Xing Yi; Koc, Soner; Sheridan, Todd; Neuhauser, Steven B.; Wang, Shidan; Evrard, Yvonne A.; Landua, John David; Mashl, R. Jay; Davies, Sherri R.; Fang, Bingliang; Raso, Maria Gabriela; Evans, Kurt W.; Bailey, Matthew H.; Chen, Yeqing; Xiao, Min; Rubinstein, Jill; Pour, Ali Foroughi; Dobrolecki, Lacey Elizabeth; Fujita, Maihi; Fujimoto, Junya; Xiao, Guanghua; Fields, Ryan C.; Mudd, Jacqueline L.; Xu, Xiaowei; Hollingshead, Melinda G.; Jiwani, Shahanawaz; Consortium, Pdxnet; Wallace, Tiffany A.; Moscow, Jeffrey A.; Doroshow, James H.; Mitsiades, Nicholas; Kaochar, Salma; Pan, Chong-Xian; Chen, Moon S.; Carvajal-Carmona, Luis G.; Welm, Alana L.; Welm, Bryan E.; Govindan, Ramaswamy; Li, Shunqiang; Davies, Michael A.; Roth, Jack A.; Meric-Bernstam, Funda; Xie, Yang; Herlyn, Meenhard; Ding, Li; Lewis, Michael T.; Bolt, Carol J.; Dean, Dennis A.; Chuang, Jeffrey H. Share Save
Molecular response in newly diagnosed chronic-phase chronic myeloid leukemia: prediction modeling and pathway analysis Radich, Jerald P.; Wall, Matthew; Branford, Susan; Campbell, Catarina D.; Chaturvedi, Shalini; DeAngelo, Daniel J.; Deininger, Michael W.; Guinney, Justin; Hochhaus, Andreas; Hughes, Timothy P.; Kantarjian, Hagop M.; Larson, Richard A.; Li, Sai; Maegawa, Rodrigo; Mishra, Kaushal; Obourn, Vanessa; Pinilla-Ibarz, Javier; Purkayastha, Das; Sadek, Islam; Saglio, Giuseppe; Shrestha, Alok; White, Brian S.; Druker, Brian J. Share Save
NIH SenNet Consortium to map senescent cells throughout the human lifespan to understand physiological health Lee, Patty J.; Benz, Christopher C.; Blood, Philip; Boerner, Katy; Campisi, Judith; Chen, Feng; Daldrup-Link, Heike; De Jager, Phil; Ding, Li; Duncan, Francesca E.; Eickelberg, Oliver; Fan, Rong; Finkel, Toren; Furman, David; Garovic, Vesna; Gehlenborg, Nils; Glass, Carolyn; Heckenbach, Indra; Joseph, Ziv-Bar; Katiyar, Pragati; Kim, So-Jin; Koenigshoff, Melanie; Kuchel, George A.; Lee, Haesung; Lee, Jun Hee; Ma, Jian; Ma, Qin; Melov, Simon; Metis, Kay; Mora, Ana L.; Musi, Nicolas; Neretti, Nicola; Passos, Joao F.; Rahman, Irfan; Rivera-Mulia, Juan Carlos; Robson, Paul; Rojas, Mauricio; Roy, Ananda L.; Scheibye-Knudsen, Morten; Schilling, Birgit; Shi, Pixu; Silverstein, Jonathan C.; Suryadevara, Vidyani; Xie, Jichun; Wang, Jinhua; Wong, A. Ian; Niedernhofer, Laura J.; Wang, Siyuan (Steven); Anvari, Hannah; Balough, Julia; Benz, Christopher; Bons, Joanna; Brenerman, Boris; Evans, William; Gerencser, Akos; Gregory, Heather; Hansen, Malene; Justice, Jamie; Kapahi, Pankaj; Murad, Natalia; O'Broin, Amy; Pavone, Mary Ellen; Powell, Mark; Scott, Gary; Shanes, Elisheva; Shankaran, Mahalakshmi; Verdin, Eric; Winer, Daniel; Wu, Fei; Adams, Andrew; Blood, Philip D.; Bueckle, Andreas; Cao-Berg, Ivan; Chen, Hao; Davis, Michael; Filus, Shane; Hao, Yuhan; Hartman, Austin; Hasanaj, Euxhen; Helfer, Jesse; Herr, Bruce, II; Bar Joseph, Ziv; Molla, Gesmira; Mou, Gloria; Puerto, Juan; Quardokus, Ellen M.; Ropelewski, Alexander J.; Ruffalo, Matt; Satija, Rahul; Schwenk, Melissa; Scibek, Robin; Shirey, William; Sibilla, Max; Welling, Joel; Yuan, Zhou; Bonneau, Richard; Christiano, Angela; Izar, Benjamin; Menon, Vilas; Owens, David M.; Phatnani, Hemali; Smith, Colin; Suh, Yousin; Teich, Andrew F.; Bekker, Valerie; Chan, Cliburn; Coutavas, Elias; Hartwig, Matthew G.; Ji, Zhicheng; Nixon, Andrew B.; Dou, Zhixun; Rajagopal, Jayaraj; Slavov, Nikolai; Holmes, David, III; Jurk, Diana; Kirkland, James L.; Lagnado, Anthony; Tchkonia, Tamara; Abraham, Kristin; Dibattista, Amanda; Fridell, Yih-Woei; Howcroft, T. Kevin; Jhappan, Chamelli; Montes, Viviana Perez; Prabhudas, Mercy; Resat, Haluk; Taylor, Veronica; Kumar, Manoj; Cigarroa, Francisco; Cohn, Rachel; Cortes, Tiffany M.; Courtois, Elise; Chuang, Jeffrey; Dave, Monica; Domanskyi, Sergii; Enninga, Elizabeth Ann Lieser; Eryilmaz, Giray Naim; Espinoza, Sara E.; Gelfond, Jon; Kirkland, James; Kuo, Chia-Ling; Lehman, Julia S.; Aguayo-Mazzucato, Cristina; Meves, Alexander; Rani, Meenakshi; Sanders, Shane; Thibodeau, Asa; Tullius, Stefan G.; Ucar, Duygu; White, Brian; Wu, Qian; Xu, Ming; Yamaguchi, Seiji; Assarzadegan, Naziheh; Cho, Chun-Seok; Hwang, Irene; Hwang, Yongha; Xi, Jingyue; Adeyi, Oyedele A.; Aliferis, Constantin F.; Bartolomucci, Alessandro; Dong, Xiao; DuFresne-To, Mickayla J.; Ikramuddin, Sayeed; Johnson, Steve G.; Nelson, Andrew C.; Revelo, Xavier S.; Trevilla-Garcia, Claudia; Sedivy, John M.; Thompson, Elizabeth L.; Robbins, Paul D.; Wang, Jinhua; Aird, Katherine M.; Alder, Jonathan K.; Beaulieu, Delphine; Bueno, Marta; Calyeca, Jazmin; Chamucero-Millaris, Julian A.; Chan, Stephen Y.; Chung, Dongjun; Corbett, Anthony; Gorbunova, Vera; Gowdy, Kymberly M.; Gurkar, Aditi; Horowitz, Jeffrey C.; Hu, Qianjiang; Kaur, Gagandeep; Khaliullin, Timur O.; Lafyatis, Robert; Lanna, Serafina; Li, Dongmei; Ma, Anjun; Morris, Alison; Muthumalage, Thivanka M.; Peters, Victor; Pryhuber, Gloria S.; Reader, Brenda F.; Rosas, Lorena; Sembrat, John C.; Shaikh, Sadiya; Shi, Hangchuan; Stacey, Sean D.; St Croix, Claudette; Wang, Cankun; Wang, Qixin; Watts, Andrew; Gu, Liangcai; Lin, Yiing; Rabinovitch, Peter S.; Sweetwyne, Mariya T.; Artyomov, Maxim N.; Ballentine, Samuel J.; Chheda, Milan G.; Davies, Sherri R.; DiPersio, John F.; Fields, Ryan C.; Fitzpatrick, James A. J.; Fulton, Robert S.; Imai, Shin-ichiro; Jain, Sanjay; Ju, Tao; Kushnir, Vladimir M.; Link, Daniel C.; Ben Major, Michael; Oh, Stephen T.; Rapp, Daniel; Rettig, Michael P.; Stewart, Shelia A.; Veis, Deborah J.; Vij, Kiran R.; Wendl, Michael C.; Wyczalkowski, Matthew A.; Craft, Joseph E.; Enninful, Archibald; Farzad, Negin; Gershkovich, Peter; Halene, Stephanie; Kluger, Yuval; VanOudenhove, Jennifer; Xu, Mina; Yang, Junchen; Yang, Mingyu Share Save
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PDXNet portal: patient-derived Xenograft model, data, workflow and tool discovery Koc, Soner; Lloyd, Michael W.; Grover, Jeffrey W.; Xiao, Nan; Seepo, Sara; Subramanian, Sai Lakshmi; Ray, Manisha; Frech, Christian; DiGiovanna, John; Webster, Phillip; Neuhauser, Steven; Srivastava, Anuj; Woo, Xing Yi; Sanderson, Brian J.; White, Brian; Lott, Paul; Dobrolecki, Lacey E.; Dowst, Heidi; Evrard, Yvonne A.; Wallace, Tiffany A.; Moscow, Jeffrey A.; Doroshow, James H.; Mitsiades, Nicholas; Kaochar, Salma; Pan, Chong-xian; Chen, Moon S.; Carvajal-Carmona, Luis; Welm, Alana L.; Welm, Bryan E.; Lewis, Michael T.; Govindan, Ramaswamy; Ding, Li; Li, Shunqiang; Herlyn, Meenhard; Davies, Michael A.; Roth, Jack; Meric-Bernstam, Funda; Robinson, Peter N.; Bult, Carol J.; Davis-Dusenbery, Brandi; Dean, Dennis A., II; Chuang, Jeffrey H. Share Save
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Mutant U2AF1-induced alternative splicing of H2afy (macroH2A1) regulates B-lymphopoiesis in mice Kim, Sanghyun P.; Srivatsan, Sridhar N.; Chavez, Monique; Shirai, Cara L.; White, Brian S.; Ahmed, Tanzir; Alberti, Michael O.; Shao, Jin; Nunley, Ryan; White, Lynn S.; Bednarski, Jeff; Pehrson, John R.; Walter, Matthew J. Share Save
Bayesian multi-source regression and monocyte-associated gene expression predict BCL-2 inhibitor resistance in acute myeloid leukemia White, Brian S.; Khan, Suleiman A.; Mason, Mike J.; Ammad-ud-din, Muhammad; Potdar, Swapnil; Malani, Disha; Kuusanmaki, Heikki; Druker, Brian J.; Heckman, Caroline; Kallioniemi, Olli; Kurtz, Stephen E.; Porkka, Kimmo; Tognon, Cristina E.; Tyner, Jeffrey W.; Aittokallio, Tero; Wennerberg, Krister; Guinney, Justin Share Save
The clonal evolution of metastatic colorectal cancer Dang, Ha X.; Krasnick, Bradley A.; White, Brian S.; Grossman, Julie G.; Strand, Matthew S.; Zhang, Jin; Cabanski, Christopher R.; Miller, Christopher A.; Fulton, Robert S.; Goedegebuure, S. Peter; Fronick, Catrina C.; Griffith, Malachi; Larson, David E.; Goetz, Brian D.; Walker, Jason R.; Hawkins, William G.; Strasberg, Steven M.; Linehan, David C.; Lim, Kian H.; Lockhart, A. Craig; Mardis, Elaine R.; Wilson, Richard K.; Ley, Timothy J.; Maher, Christopher A.; Fields, Ryan C. Share Save
Multiple Myeloma DREAM Challenge reveals epigenetic regulator PHF19 as marker of aggressive disease Mason, Mike J.; Schinke, Carolina; Eng, Christine L. P.; Towfic, Fadi; Gruber, Fred; Dervan, Andrew; White, Brian S.; Pratapa, Aditya; Guan, Yuanfang; Chen, Hongjie; Cui, Yi; Li, Bailiang; Yu, Thomas; Chaibub Neto, Elias; Mavrommatis, Konstantinos; Ortiz, Maria; Lyzogubov, Valeriy; Bisht, Kamlesh; Dai, Hongyue Y.; Schmitz, Frank; Flynt, Erin; Rozelle, Dan; Danziger, Samuel A.; Ratushny, Alexander; Dalton, William S.; Goldschmidt, Hartmut; Avet-Loiseau, Herve; Samur, Mehmet; Hayete, Boris; Sonneveld, Pieter; Shain, Kenneth H.; Munshi, Nikhil; Auclair, Daniel; Hose, Dirk; Morgan, Gareth; Trotter, Matthew; Bassett, Douglas; Goke, Jonathan; Walker, Brian A.; Thakurta, Anjan; Guinney, Justin Share Save
Physical, genomic, and proteomic characterization of a cancer cell line panel in an integrated dataset Nikolov, Milen; White, Brian; Pegoraro, Adrian; Hope, Debra; Eljanne, Mariam; Eddy, James; Janmey, Paul; Mallick, Parag; Dang, Kristen Share Save
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Gene expression predicts ex vivo drug sensitivity in acute myeloid leukemia White, Brian S.; Khan, Suleiman A.; Ammad-ud-din, Muhammad; Potdar, Swapnil; Mason, Mike J.; Tognon, Cristina E.; Druker, Brian J.; Heckman, Caroline A.; Kallioniemi, Olli P.; Kurtz, Stephen E.; Porkka, Kimmo; Tyner, Jeffrey W.; Aittokallio, Tero; Wennerberg, Krister; Guinney, Justin Share Save
A multiple myeloma-specific capture sequencing platform discovers novel translocations and frequent, risk-associated point mutations in IGLL5 White, Brian S.; Lanc, Irena; O'Neal, Julie; Gupta, Harshath; Fulton, Robert S.; Schmidt, Heather; Fronick, Catrina; Belter, Edward A., Jr.; Fiala, Mark; King, Justin; Ahmann, Greg J.; DeRome, Mary; Mardis, Elaine R.; Vij, Ravi; DiPersio, John F.; Levy, Joan; Auclair, Daniel; Tomasson, Michael H. Share Save
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