Not logged in A general approach for detecting expressed mutations in AML cells using single cell RNA-sequencing (vol 10, 3660, 2019) Petti, Allegra A.; Williams, Stephen R.; Miller, Christopher A.; Fiddes, Ian T.; Srivatsan, Sridhar N.; Chen, David Y.; Fronick, Catrina C.; Fulton, Robert S.; Church, Deanna M.; Ley, Timothy J. Share Save
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De novo assembly of the olive fruit fly (Bactrocera oleae) genome with linked-reads and long-read technologies minimizes gaps and provides exceptional Y chromosome assembly Bayega, Anthony; Djambazian, Haig; Tsoumani, Konstantina T.; Gregoriou, Maria-Eleni; Sagri, Efthimia; Drosopoulou, Eleni; Mavragani-Tsipidou, Penelope; Giorda, Kristina; Tsiamis, George; Bourtzis, Kostas; Oikonomopoulos, Spyridon; Dewar, Ken; Church, Deanna M.; Papanicolaou, Alexie; Mathiopoulos, Kostas D.; Ragoussis, Jiannis Share Save
Haplotyping the Vitis collinear core genome with rhAmpSeq improves marker transferability in a diverse genus Zou, Cheng; Karn, Avinash; Reisch, Bruce; Nguyen, Allen; Sun, Yongming; Bao, Yun; Campbell, Michael S.; Church, Deanna; Williams, Stephen; Xu, Xia; Ledbetter, Craig A.; Patel, Sagar; Fennell, Anne; Glaubitz, Jeffrey C.; Clark, Matthew; Ware, Doreen; Londo, Jason P.; Sun, Qi; Cadle-Davidson, Lance Share Save
Birth, expansion, and death of VCY-containing palindromes on the human Y chromosome Shi, Wentao; Massaia, Andrea; Louzada, Sandra; Handsaker, Juliet; Chow, William; McCarthy, Shane; Collins, Joanna; Hallast, Pille; Howe, Kerstin; Church, Deanna M.; Yang, Fengtang; Xue, Yali; Tyler-Smith, Chris Share Save
A general approach for detecting expressed mutations in AML cells using single cell RNA-sequencing Petti, Allegra A.; Williams, Stephen R.; Miller, Christopher A.; Fiddes, Ian T.; Srivatsari, Sridhar N.; Chen, David Y.; Fronick, Catrina C.; Fulton, Robert S.; Church, Deanna M.; Ley, Timothy J. Share Save
Multi-platform discovery of haplotype-resolved structural variation in human genomes Chaisson, Mark J. P.; Sanders, Ashley D.; Zhao, Xuefang; Malhotra, Ankit; Porubsky, David; Rausch, Tobias; Gardner, Eugene J.; Rodriguez, Oscar L.; Guo, Li; Collins, Ryan L.; Fan, Xian; Wen, Jia; Handsaker, Robert E.; Fairley, Susan; Kronenberg, Zev N.; Kong, Xiangmeng; Hormozdiari, Fereydoun; Lee, Dillon; Wenger, Aaron M.; Hastie, Alex R.; Antaki, Danny; Anantharaman, Thomas; Audano, Peter A.; Brand, Harrison; Cantsilieris, Stuart; Cao, Han; Cerveira, Eliza; Chen, Chong; Chen, Xintong; Chin, Chen-Shan; Chong, Zechen; Chuang, Nelson T.; Lambert, Christine C.; Church, Deanna M.; Clarke, Laura; Farrell, Andrew; Flores, Joey; Galeev, Timur; Gorkin, David U.; Gujral, Madhusudan; Guryev, Victor; Heaton, William Haynes; Korlach, Jonas; Kumar, Sushant; Kwon, Jee Young; Lam, Ernest T.; Lee, Jong Eun; Lee, Joyce; Lee, Wan-Ping; Lee, Sau Peng; Li, Shantao; Marks, Patrick; Viaud-Martinez, Karine; Meiers, Sascha; Munson, Katherine M.; Navarro, Fabio C. P.; Nelson, Bradley J.; Nodzak, Conor; Noor, Amina; Kyriazopoulou-Panagiotopoulou, Sofia; Pang, Andy W. C.; Qiu, Yunjiang; Rosanio, Gabriel; Ryan, Mallory; Stuetz, Adrian; Spierings, Diana C. J.; Ward, Alistair; Welch, AnneMarie E.; Xiao, Ming; Xu, Wei; Zhang, Chengsheng; Zhu, Qihui; Zheng-Bradley, Xiangqun; Lowy, Ernesto; Yakneen, Sergei; McCarroll, Steven; Jun, Goo; Ding, Li; Koh, Chong Lek; Ren, Bing; Flicek, Paul; Chen, Ken; Gerstein, Mark B.; Kwok, Pui-Yan; Lansdorp, Peter M.; Marth, Gabor T.; Sebat, Jonathan; Shi, Xinghua; Bashir, Ali; Ye, Kai; Devine, Scott E.; Talkowski, Michael E.; Mills, Ryan E.; Marschall, Tobias; Korbel, Jan O.; Eichler, Evan E.; Lee, Charles Share Save
Resolving the full spectrum of human genome variation using Linked-Reads Marks, Patrick; Garcia, Sarah; Barrio, Alvaro Martinez; Belhocine, Kamila; Bernate, Jorge; Bharadwaj, Rajiv; Bjornson, Keith; Catalanotti, Claudia; Delaney, Josh; Fehr, Adrian; Fiddes, Ian T.; Galvin, Brendan; Heaton, Haynes; Herschleb, Jill; Hindson, Christopher; Holt, Esty; Jabara, Cassandra B.; Jett, Susanna; Keivanfar, Nikka; Kyriazopoulou-Panagiotopoulou, Sofia; Lek, Monkol; Lin, Bill; Lowe, Adam; Mahamdallie, Shazia; Maheshwari, Shamoni; Makarewicz, Tony; Marshall, Jamie; Meschi, Francesca; O'Keefe, Christopher J.; Ordonez, Heather; Patel, Pranav; Price, Andrew; Royall, Ariel; Ruark, Elise; Seal, Sheila; Schnall-Levin, Michael; Shah, Preyas; Stafford, David; Williams, Stephen; Wu, Indira; Xu, Andrew Wei; Rahman, Nazneen; MacArthur, Daniel; Church, Deanna M. Share Save
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Characterizing genomic variation and tumor heterogeneity in cancer Catalanotti, Claudia; Garcia, Sarah; Belhocine, Kamila; Kumar, Vijay; Dzakula, Zeljko; Price, Andrew; Maheshwar, Shamoni; Yin, Yifeng; Schnall-Levin, Michael; Bharadwaj, Rajiv; Le, Sara Agee; Church, Deanna M. Share Save
Analyzing infiltrating B cell populations in the tumor microenvironment using single cell transcriptomics Taylor, Sarah E.; Boutet, Stephane; Giangarra, Valeria; Zheng, Grace X.; Barrio, Alvaro M.; Montesclaros, Luz; Lee, Josephine; Marrs, Samuel; Wu, Kevin J.; Ryvkin, Paul; Mikkelsen, Tarjei; Church, Deanna M. Share Save
Identifying genetic variation and cellular heterogeneity with a comprehensive cancer analysis toolkit Garcia, Sarah; Bharadwaj, Rajiv; Boutet, Stephane; Catalanotti, Claudia; Giangerra, Valeria; Lee, Josephine; Terry, Jessica; Williams, Stephen; Zheng, Grace X.; Mikkelsen, Tarjei; Schnall-Levin, Michael; Hindson, Ben; Church, Deanna M. Share Save
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Reference quality assembly of the 3.5-Gb genome of Capsicum annuum from a single linked-read library Hulse-Kemp, Amanda M.; Maheshwari, Shamoni; Stoffel, Kevin; Hill, Theresa A.; Jaffe, David; Williams, Stephen R.; Weisenfeld, Neil; Ramakrishnan, Srividya; Kumar, Vijay; Shah, Preyas; Schatz, Michael C.; Church, Deanna M.; Van Deynze, Allen Share Save
Principles and Recommendations for Standardizing the Use of the Next-Generation Sequencing Variant File in Clinical Settings Lubin, Ira M.; Aziz, Nazneen; Babb, Lawrence J.; Ballinger, Dennis; Bisht, Himani; Church, Deanna M.; Cordes, Shaun; Eilbeck, Karen; Hyland, Fiona; Kalman, Lisa; Landrum, Melissa; Lockhart, Edward R.; Maglott, Donna; Marth, Gabor; Pfeifer, John D.; Rehm, Heidi L.; Roy, Somak; Tezak, Zivana; Truty, Rebecca; Ullman-Cullere, Mollie; Voelkerding, Karl V.; Worthey, Elizabeth A.; Zaranek, Alexander W.; Zook, Justin M. Share Save
Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly Schneider, Valerie A.; Graves-Lindsay, Tina; Howe, Kerstin; Bouk, Nathan; Chen, Hsiu-Chuan; Kitts, Paul A.; Murphy, Terence D.; Pruitt, Kim D.; Thibaud-Nissen, Francoise; Albracht, Derek; Fulton, Robert S.; Kremitzki, Milinn; Magrini, Vincent; Markovic, Chris; McGrath, Sean; Steinberg, Karyn Meltz; Auger, Kate; Chow, William; Collins, Joanna; Harden, Glenn; Hubbard, Timothy; Pelan, Sarah; Simpson, Jared T.; Threadgold, Glen; Torrance, James; Wood, Jonathan M.; Clarke, Laura; Koren, Sergey; Boitano, Matthew; Peluso, Paul; Li, Heng; Chin, Chen-Shan; Phillippy, Adam M.; Durbin, Richard; Wilson, Richard K.; Flicek, Paul; Eichler, Evan E.; Church, Deanna M. Share Save
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Analytical validation of comprehensive assays for genomic profiling of cancer from DNA and RNA Beck, J.; Newburn, E.; Clark, M.; Lefterova, M.; Helman, E.; Alla, R.; Church, D.; Boyle, S.; Luo, S.; Morra, M.; Harris, J.; Leng, N.; Haudenschild, C.; Chen, R.; West, J. Share Save
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