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Allon M. Klein

Harvard Medical School

55H-index
147Paper Count
2.9WCitation Count
Published Papers 57
Publication Date
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Multistep genomics on single cells and live cultures in subnanoliter capsules
errScience
IF45.8
err2025-12-18
err0
PREAI
errIgnas Mazelis; Haoxiang Sun; Arpita Kulkarni; Theresa L. Torre; Allon M. Klein
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errSave
Learning cell dynamics with neural differential equations
errNature Machine Intelligence
IF23.9
err2025-12-18
err0
PREAI
errMichael E. Vinyard; Anders W. Rasmussen; Ruitong Li; Allon M. Klein; Gad Getz; Luca Pinello
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errSave
IL-17 stimulates erythropoiesis in vivo by amplifying the response of erythroid progenitors to erythropoietin
errPLOS BIOLOGY
IF7.2
err2025-12-01
err0
PREAI
errWu, Qiu C.; Swaminathan, Aishwarya; Winward, Ashley; Lalonde, Logan; Hwang, Yung; Littman, Noah; Socolovsky, Merav; Klein, Allon M.
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errSave
A mannitol-based buffer improves single-cell RNA sequencing of high-salt marine cells
errBMC Genomics
IF3.7
err2025-12-01
err0
errOAAI
errTal D. Scully; Allon M. Klein
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errSave
Divergence of immune cell types in chordate blood
errCurrent Biology
IF7.5
err2025-11-13
err0
PREAI
errTal D. Scully; C.J. Pickett; Nicolas A. Gort-Freitas; Bradley Davidson; Allon M. Klein
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errSave
Author Correction: The emergence of transcriptional identity in somatosensory neurons
errNature
IF48.5
err2025-11-06
err0
errOAAI
errNikhil Sharma; Kali Flaherty; Karina Lezgiyeva; Daniel E. Wagner; Allon M. Klein; David D. Ginty
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errSave
Tissue Fluidity Mediates a Trade-off Between the Speed and Accuracy of Multicellular Patterning by Cell Sorting
errBiophysical Journal
IF3.1
err2025-10-09
err0
PREAI
errRikki M. Garner; Sean E. McGeary; Allon M. Klein; Sean G. Megason
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errSave
The Biodiversity Cell Atlas: mapping the tree of life at cellular resolution
errNature
IF48.5
err2025-09-24
err0
PREAI
errArnau Sebé-Pedrós; Amos Tanay; Mara K. N. Lawniczak; Detlev Arendt; Stein Aerts; John Archibald; Maria Ina Arnone; Mark Blaxter; Phillip Cleves; Susana M. Coelho; Mafalda Dias; Casey Dunn; Anamaria Elek; Jonathan Frazer; Toni Gabaldón; Jesse Gillis; Xavier Grau-Bové; Roderic Guigó; Oliver Hobert; Jaime Huerta-Cepas; Manuel Irimia; Allon Klein; Harris Lewin; Christopher J. Lowe; Heather Marlow; Jacob M. Musser; László G. Nagy; Sebastián R. Najle; Lior Pachter; Sadye Paez; Irene Papatheodorou; Michael J. Passalacqua; Nikolaus Rajewsky; Seung Y. Rhee; Thomas A. Richards; Tatjana Sauka-Spengler; Lauren M. Saunders; Eve Seuntjens; Jordi Solana; Yuyao Song; Ulrich Technau; Bo Wang
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errSave
Single-cell and clonal analysis of AL amyloidosis plasma cells and their bone marrow microenvironment
errBlood
IF23.1
err2025-06-16
err0
PREAI
errNicolas A. Gort-Freitas; Maria Moscvin; Matteo C. Da Vià; Francesca Lazzaroni; Alice Nevone; Sam Sadigh; Samuel Boullt; Benjamin Evans; Tianzeng Chen; Tanya Karagiannis; Albert Tai; Sean Rowell; Srinidhi Raghav; Antonia F. Chen; Jacob P. Laubach; Caitlin Edwards; Jon C. Aster; Zizhang Sheng; Joao A. Paulo; Chi N. Chan; Mario Nuvolone; Niccolò Bolli; Raymond L. Comenzo; Allon M. Klein; Giada Bianchi
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errSave
Linker minimization and characterization of Fc-fused interleukin-17A for increased in vivo half-life
errPROTEIN ENGINEERING DESIGN & SELECTION
IF3.4
err2025-01-01
err1
PREAI
errWu, Qiu C.; Lee, Jungmin; Swaminathan, Aishwarya; Winward, Ashley; Hwang, Yung; Socolovsky, Merav; Way, Jeffrey C.; Klein, Allon M.
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errSave
Cell state transitions are decoupled from cell division during early embryo development
errNATURE CELL BIOLOGY
IF19.1
err2024-11-08
err0
PREAI
errKukreja, Kalki; Jia, Bill Z.; Mcgeary, Sean E.; Patel, Nikit; Megason, Sean G.; Klein, Allon M.
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errSave
A map of signaling responses in the human airway epithelium
errCELL SYSTEMS
IF7.7
err2024-04-01
err2
errOAAI
errMcCauley, Katherine B.; Kukreja, Kalki; Walker, Alfredo E. Tovar; Jaffe, Aron B.; Klein, Allon M.
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errSave
The secreted neuronal signal Spock1 promotes blood-brain barrier development
errDEVELOPMENTAL CELL
IF8.7
err2023-09-01
err7
PREAI
errO'Brown, Natasha M.; Patel, Nikit B.; Hartmann, Ursula; Klein, Allon M.; Gu, Chenghua; Megason, Sean G.
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errSave
CoSpar identifies early cell fate biases from single-cell transcriptomic and lineage information
errNATURE BIOTECHNOLOGY
IF41.7
err2022-02-21
err35
errOAAI
errWang, Shou-Wen; Herriges, Michael J.; Hurley, Kilian; Kotton, Darrell N.; Klein, Allon M.
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errSave
How can Waddington-like landscapes facilitate insights beyond developmental biology?
errCELL SYSTEMS
IF7.7
err2022-01-01
err9
errOAAI
errShakiba, Nika; Li, Chunhe; Garcia-Ojalvo, Jordi; Cho, Kwang-Hyun; Patil, Kiran; Walczak, Aleksandra; Liu, Yang-Yu; Kuehn, Seppe; Nie, Qing; Klein, Allon; Deco, Gustavo; Kringelbach, Morten; Iyer-Biswas, Srividya
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errSave
Single cell biology-a Keystone Symposia report
errANNALS OF THE NEW YORK ACADEMY OF SCIENCES
IF4.8
err2021-10-03
err3
errOAAI
errCable, Jennifer; Elowitz, Michael B.; Domingos, Ana I.; Habib, Naomi; Itzkovitz, Shalev; Hamidzada, Homaira; Balzer, Michael S.; Yanai, Itai; Liberali, Prisca; Whited, Jessica; Streets, Aaron; Cai, Long; Stergachis, Andrew B.; Hong, Clarice Kit Yee; Keren, Leeat; Guilliams, Martin; Alon, Uri; Shalek, Alex K.; Hamel, Regan; Pfau, Sarah J.; Raj, Arjun; Quake, Stephen R.; Zhang, Nancy R.; Fan, Jean; Trapnell, Cole; Wang, Bo; Greenwald, Noah F.; Vento-Tormo, Roser; Santos, Silvia D. M.; Spencer, Sabrina L.; Garcia, Hernan G.; Arekatla, Geethika; Gaiti, Federico; Arbel-Goren, Rinat; Rulands, Steffen; Junker, Jan Philipp; Klein, Allon M.; Morris, Samantha A.; Murray, John I.; Galloway, Kate E.; Ratz, Michael; Romeike, Merrit
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errSave
Inflation-collapse dynamics drive patterning and morphogenesis in intestinal organoids
errCELL STEM CELL
IF20.4
err2021-09-01
err52
errOAAI
errTallapragada, Naren P.; Cambra, Hailey M.; Wald, Tomas; Jalbert, Samantha Keough; Abraham, Diana M.; Klein, Ophir D.; Klein, Allon M.
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errSave
Resident Kupffer cells and neutrophils drive liver toxicity in cancer immunotherapy
errSCIENCE IMMUNOLOGY
IF16.3
err2021-07-29
err56
errOAAI
errSiwicki, Marie; Gort-Freitas, Nicolas A.; Messemaker, Marius; Bill, Ruben; Gungabeesoon, Jeremy; Engblom, Camilla; Zilionis, Rapolas; Garris, Christopher; Gerhard, Genevieve M.; Kohl, Anna; Lin, Yunkang; Zou, Angela E.; Cianciaruso, Chiara; Bolli, Evangelia; Pfirschke, Christina; Lin, Yi-Jang; Piot, Cecile; Mindur, John E.; Talele, Nilesh; Kohler, Rainer H.; Iwamoto, Yoshiko; Mino-Kenudson, Mari; Pai, Sara, I; DeVito, Claudio; Koessler, Thibaud; Merkler, Doron; Coukos, Alexander; Wicky, Alexandre; Fraga, Montserrat; Sempoux, Christine; Jain, Rakesh K.; Dietrich, Pierre-Yves; Michielin, Olivier; Weissleder, Ralph; Klein, Allon M.; Pittet, Mikael J.
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Identification of a targetable KRAS-mutant epithelial population in non-small cell lung cancer
errCOMMUNICATIONS BIOLOGY
IF5.1
err2021-04-14
err16
errOAAI
errMaroni, Giorgia; Bassal, Mahmoud A.; Krishnan, Indira; Fhu, Chee Wai; Savova, Virginia; Zilionis, Rapolas; Maymi, Valerie A.; Pandell, Nicole; Csizmadia, Eva; Zhang, Junyan; Storti, Barbara; Castano, Julio; Panella, Riccardo; Li, Jia; Gustafson, Corinne E.; Fox, Sam; Levy, Rachel D.; Meyerovitz, Claire, V; Tramontozzi, Peter J.; Vermilya, Kimberly; De Rienzo, Assunta; Crucitta, Stefania; Basseres, Daniela S.; Weetall, Marla; Branstrom, Art; Giorgetti, Alessandra; Ciampi, Raffaele; Del Re, Marzia; Danesi, Romano; Bizzarri, Ranieri; Yang, Henry; Kocher, Olivier; Klein, Allon M.; Welner, Robert S.; Bueno, Raphael; Magli, Maria Cristina; Clohessy, John G.; Ali, Azhar; Tenen, Daniel G.; Levantini, Elena
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errSave
Tumor-infiltrating dendritic cell states are conserved across solid human cancers
errJOURNAL OF EXPERIMENTAL MEDICINE
IF10.6
err2020-12-18
err149
errOAAI
errGerhard, Genevieve M.; Bill, Ruben; Messemaker, Marius; Klein, Allon M.; Pittet, Mikael J.
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Research Directions

No research directions
Co-authors
Cooperation Journals
G
Gad Getz
H-index: 248 · Papers: 1.8K
R
Rakesh K. Jain
H-index: 200 · Papers: 1.7K
R
Ralph Weissleder
H-index: 200 · Papers: 1.6K
S
Steven P. Gygi
H-index: 195 · Papers: 1.0K
M
Marc W. Kirschner
H-index: 169 · Papers: 526
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