arrow
Back
S

Sergey Ovchinnikov

massachusetts institute of technology

51H-index
167Paper Count
3.2WCitation Count
Published Papers 45
Publication Date
Learning millisecond protein dynamics from what is missing in NMR spectra
errNature
IF48.5
err2026-08-10
err0
PREAI
errHannah K. Wayment-Steele; Gina El Nesr; Ramith Hettiarachchi; Adedolapo M. Ojoawo; Hasindu Kariyawasam; Sergey Ovchinnikov; Dorothee Kern
errShare
errSave
Expanding the scope of protein language modeling to protein-protein interactions with MSA Pairformer
errCell
IF42.5
err2026-07-21
err0
errOAAI
errYo Akiyama; Zhidian Zhang; Olivia Tang; Rachel Seongeun Kim; Milot Mirdita; Martin Steinegger; Sergey Ovchinnikov
errShare
errSave
Toward life with a 19–amino acid alphabet through generative artificial intelligence design
errScience
IF45.8
err2026-04-30
err0
PREAI
errLiyuan Liu; Charlotte Rochereau; Simon Kozlov; Guillaume Urtecho; Xiaonan Liu; Jiahui Zhao; Jasmine Wang; Yiming Huang; Yiming Qu; Zetian Zhang; Tomasz Blazejewski; Avi Swartz; Sergey Ovchinnikov; Harris H. Wang
errShare
errSave
Stable de novo protein design via joint conformational landscape and sequence optimization
err2025-12-24
err0
errOAAI
errYehlin Cho; Justas Dauparas; Kotaro Tsuboyama; Gabriel J. Rocklin; Sergey Ovchinnikov
errShare
errSave
Designing novel solenoid proteins with in silico evolution
err2025-12-04
err0
errOAAI
errDaniella Pretorius; Georgi I. Nikov; Kono Washio; Steve-William Florent; Henry N. Taunt; Sergey Ovchinnikov; James W. Murray
errShare
errSave
Democratizing protein language model training, sharing and collaboration
err2025-10-24
err0
PREAI
errJin Su; Zhikai Li; Tianli Tao; Chenchen Han; Yan He; Fengyuan Dai; Qingyan Yuan; Yuan Gao; Tong Si; Xuting Zhang; Yuyang Zhou; Junjie Shan; Xibin Zhou; Xing Chang; Shiyu Jiang; Dacheng Ma; Martin Steinegger; Sergey Ovchinnikov; Fajie Yuan
errShare
errSave
One-shot design of functional protein binders with BindCraft
errNature
IF48.5
err2025-08-27
err0
errOAAI
errMartin Pacesa; Lennart Nickel; Christian Schellhaas; Joseph Schmidt; Ekaterina Pyatova; Lucas Kissling; Patrick Barendse; Jagrity Choudhury; Srajan Kapoor; Ana Alcaraz-Serna; Yehlin Cho; Kourosh H. Ghamary; Laura Vinué; Brahm J. Yachnin; Andrew M. Wollacott; Stephen Buckley; Adrie H. Westphal; Simon Lindhoud; Sandrine Georgeon; Casper A. Goverde; Georgios N. Hatzopoulos; Pierre Gönczy; Yannick D. Muller; Gerald Schwank; Daan C. Swarts; Alex J. Vecchio; Bernard L. Schneider; Sergey Ovchinnikov; Bruno E. Correia
errShare
errSave
De novo design of a peptide modulator to reverse sodium channel dysfunction linked to cardiac arrhythmias and epilepsy
errCell
IF42.5
err2025-08-18
err0
PREAI
errRyan Mahling; Bence Hegyi; Erin R. Cullen; Timothy M. Cho; Aaron R. Rodriques; Lucile Fossier; Marc Yehya; Lin Yang; Bi-Xing Chen; Alexander N. Katchman; Nourdine Chakouri; Ruiping Ji; Elaine Y. Wan; Jared Kushner; Steven O. Marx; Sergey Ovchinnikov; Christopher D. Makinson; Donald M. Bers; Manu Ben-Johny
errShare
errSave
Does sequence clustering confound AlphaFold2?
err2025-08-06
err0
errOAAI
errHannah K. Wayment-Steele; Sergey Ovchinnikov; Lucy Colwell; Dorothee Kern
errShare
errSave
Accurate de novo design of high-affinity protein-binding macrocycles using deep learning
err2025-06-20
err0
errOAAI
errStephen A. Rettie; David Juergens; Victor Adebomi; Yensi Flores Bueso; Qinqin Zhao; Alexandria N. Leveille; Andi Liu; Asim K. Bera; Joana A. Wilms; Alina Üffing; Alex Kang; Evans Brackenbrough; Mila Lamb; Stacey R. Gerben; Analisa Murray; Paul M. Levine; Maika Schneider; Vibha Vasireddy; Sergey Ovchinnikov; Oliver H. Weiergräber; Dieter Willbold; Joshua A. Kritzer; Joseph D. Mougous; David Baker; Frank DiMaio; Gaurav Bhardwaj
errShare
errSave
Artificial intelligence methods for protein folding and design
err2025-06-11
err0
PREAI
errZhidian Zhang; Chenxi Ou; Yehlin Cho; Yo Akiyama; Sergey Ovchinnikov
errShare
errSave
Easy and accurate protein structure prediction using ColabFold
err2024-10-14
err1
PREAI
errKim, Gyuri; Lee, Sewon; Karin, Eli Levy; Kim, Hyunbin; Moriwaki, Yoshitaka; Ovchinnikov, Sergey; Steinegger, Martin; Mirdita, Milot
errShare
errSave
Integrated structure prediction of protein-protein docking with experimental restraints using ColabDock (vol 6, pg 924, 2024)
err2024-09-10
err0
PREAI
errFeng, Shihao; Chen, Zhenyu; Zhang, Chengwei; Xie, Yuhao; Ovchinnikov, Sergey; Gao, Yi Qin; Liu, Sirui
errShare
errSave
Integrated structure prediction of protein-protein docking with experimental restraints using ColabDock
err2024-08-05
err1
PREAI
errFeng, Shihao; Chen, Zhenyu; Zhang, Chengwei; Xie, Yuhao; Ovchinnikov, Sergey; Gao, Yi Qin; Liu, Sirui
errShare
errSave
Genomic language model predicts protein co-regulation and function
err2024-04-03
err9
errOAAI
errHwang, Yunha; Cornman, Andre L.; Kellogg, Elizabeth H.; Ovchinnikov, Sergey; Girguis, Peter R.
errShare
errSave
NMPFamsDB: a database of novel protein families from microbial metagenomes and metatranscriptomes
err2023-10-09
err4
errOAAI
errBaltoumas, Fotis A.; Karatzas, Evangelos; Liu, Sirui; Ovchinnikov, Sergey; Sofianatos, Yorgos; Chen, I-Min; Kyrpides, Nikos C.; Pavlopoulos, Georgios A.
errShare
errSave
De novo design of small beta barrel proteins
err2023-03-10
err19
errOAAI
errKim, David E.; Jensen, Davin R.; Feldman, David; Tischer, Doug; Saleem, Ayesha; Chow, Cameron M.; Li, Xinting; Carter, Lauren; Milles, Lukas; Nguyen, Hannah; Kang, Alex; Bera, Asim K.; Peterson, Francis C.; Volkman, Brian F.; Ovchinnikov, Sergey; Baker, David
errShare
errSave
Co-evolution-based prediction of metal-binding sites in proteomes by machine learning
err2023-01-02
err19
PREAI
errCheng, Yao; Wang, Haobo; Xu, Hua; Liu, Yuan; Ma, Bin; Chen, Xuemin; Zeng, Xin; Wang, Xianghe; Wang, Bo; Shiau, Carina; Ovchinnikov, Sergey; Su, Xiao-Dong; Wang, Chu
errShare
errSave
Computational design of constitutively active cGAS
err2023-01-02
err8
PREAI
errDowling, Quinton M.; Volkman, Hannah E.; Gray, Elizabeth E.; Ovchinnikov, Sergey; Cambier, Stephanie; Bera, Asim K.; Sankaran, Banumathi; Johnson, Max R.; Bick, Matthew J.; Kang, Alex; Stetson, Daniel B.; King, Neil P.
errShare
errSave
A structural biology community assessment of AlphaFold2 applications
err2022-11-07
err259
errOAAI
errAkdel, Mehmet; Pires, Douglas E., V; Porta Pardo, Eduard; Janes, Jurgen; Zalevsky, Arthur O.; Meszaros, Balint; Bryant, Patrick; Good, Lydia L.; Laskowski, Roman A.; Pozzati, Gabriele; Shenoy, Aditi; Zhu, Wensi; Kundrotas, Petras; Serra, Victoria Ruiz; Rodrigues, Carlos H. M.; Dunham, Alistair S.; Burke, David; Borkakoti, Neera; Velankar, Sameer; Frost, Adam; Basquin, Jerome; Lindorff-Larsen, Kresten; Bateman, Alex; Kajava, Andrey, V; Valencia, Alfonso; Ovchinnikov, Sergey; Durairaj, Janani; Ascher, David B.; Thornton, Janet M.; Davey, Norman E.; Stein, Amelie; Elofsson, Arne; Croll, Tristan, I; Beltrao, Pedro
errShare
errSave