Francisco M. De La Vega - Publications, H-index & Citations

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Francisco M. De La Vega

Stanford University

31H-index

99Paper Count

1.6WCitation Count

Published Papers 21

Publication Date

A Comprehensive Whole Genome Sequencing Assay Provides Robust Characterization of Clinically Relevant Genomic Alterations across Myeloid Malignancies Concordant with Matched Results from Targeted DNA, Whole Transcriptome RNA and Cytogenetic Profiling

BLOOD

IF23.1

2024-11-05

PREAI

Huether, Robert; Hoskinson, Derick; Anur, Pavana; Torres, Raul; Beutner, Karl R.; Yang, Yan; Kaneva, Kristiyana; Potts, Kelly A.; Frazier, Andrew; Braunstein, Iris; Mahon, Brett; Thompson, Michael A.; Sasser, Kate; Nimeiri, Halla; Kraft, Lewis J.; de la Vega, Francisco; Dinner, Shira N.; Garcia-Manero, Guillermo

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Pharmacogenomic insights in psychiatric care: uncovering novel actionability, allele-specific CYP2D6 copy number variation, and phenoconversion in 15,000 patients

MOLECULAR PSYCHIATRY

IF10.1

2024-05-23

OAAI

Patel, Jai N.; Morris, Sarah A.; Torres, Raul; Rhead, Brooke; Vlangos, Chris; Mueller, Daniel J.; Brown, Lisa C.; Lefkofsky, Hailey; Ali, Muneer; de la Vega, Francisco M.; Barnes, Kathleen C.; Zoghbi, Anthony; Stanton, Joseph D.; Badgeley, Marcus A.

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Genetic ancestry associations with pancreatic cancer mutational profiles from a diverse 9,274-patient real-world cohort

CANCER RESEARCH

IF16.6

2024-03-22

PREAI

Rhead, Brooke; Vudatha, Vignesh; Pouliot, Yannick; Williamns, Edward; Riner, Andrea N.; De La Vega, Francisco M.; Trevino, Jose

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Genetic ancestry associations with prostate adenocarcinoma mutational profiles: New Insights from a diverse 5,959-patient real-world cohort

CANCER RESEARCH

IF16.6

2024-03-22

PREAI

Rhead, Brooke; Pouliot, Yannick; De la Vega, Francisco M.; Craig, David W.; Carpten, John

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Molecular profiling of a real-world breast cancer cohort with genetically inferred ancestries reveals actionable tumor biology differences between European ancestry and African ancestry patient populations

BREAST CANCER RESEARCH

IF5.6

2023-05-25

OAAI

Miyashita, Minoru; Bell, Joshua S. K.; Wenric, Stephane; Karaesmen, Ezgi; Rhead, Brooke; Kase, Matthew; Kaneva, Kristiyana; de la Vega, Francisco M. M.; Zheng, Yonglan; Yoshimatsu, Toshio F. F.; Khramtsova, Galina; Liu, Fang; Zhao, Fangyuan; Howard, Frederick M. M.; Nanda, Rita; Beaubier, Nike; White, Kevin P. P.; Huo, Dezheng; Olopade, Olufunmilayo I. I.

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Ancestry-associated differences in somatic mutation rates from tumor profiling data of a pan-cancer cohort of 100,000 patients

CANCER RESEARCH

IF16.6

2023-04-04

PREAI

Rhead, Brooke; Pouliot, Yannick; Guinney, Justin; de la Vega, Francisco M.

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Racial disparities in tumor profiling testing inferred from continental genetic ancestry determination of 100,000 cancer patients

CANCER EPIDEMIOLOGY BIOMARKERS & PREVENTION

IF3.4

2023-01-01

PREAI

De La Vega, Francisco M.; Pouliot, Yannick; Rhead, Brooke; Guinney, Justin

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Racial and Ethnic Differences in Genomic Profiling of Early Onset Colorectal Cancer

JNCI-JOURNAL OF THE NATIONAL CANCER INSTITUTE

IF7.2

2022-02-02

OAAI

Hein, David M.; Deng, Weiye; Bleile, MaryLena; Kazmi, Syed Ali; Rhead, Brooke; De la Vega, Francisco M.; Jones, Amy L.; Kainthla, Radhika; Jiang, Wen; Cantarel, Brandi; Sanford, Nina N.

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Virtual meetings promise to eliminate geographical and administrative barriers and increase accessibility, diversity and inclusivity

NATURE BIOTECHNOLOGY

IF41.7

2021-12-29

OAAI

Wu, Juncheng; Rajesh, Anushka; Huang, Yu-Ning; Chhugani, Karishma; Acharya, Rajesh; Peng, Kerui; Johnson, Ruth D.; Fiscutean, Andrada; Daniela Robles-Espinoza, Carla; De la Vega, Francisco M.; Bao, Riyue Y.; Mangul, Serghei

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Integrated genomic characterization of ERBB2/HER2 alterations in invasive breast carcinoma: a focus on unusual FISH groups

MODERN PATHOLOGY

IF5.5

2020-08-01

OAAI

Yang, Soo-Ryum; Bouhlal, Yosr; De La Vega, Francisco M.; Ballard, Morgan; Kuo, Calvin J.; Vilborg, Anna; Jensen, Greg; Allison, Kimberly

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Butler enables rapid cloud-based analysis of thousands of human genomes

NATURE BIOTECHNOLOGY

IF41.7

2020-02-05

OAAI

Yakneen, Sergei; Waszak, Sebastian M.; Gertz, Michael; Korbel, Jan O.; Aminou, Brice; Bartolome, Javier; Boroevich, Keith A.; Boyce, Rich; Brooks, Angela N.; Buchanan, Alex; Buchhalter, Ivo; Butler, Adam P.; Byrne, Niall J.; Cafferkey, Andy; Campbell, Peter J.; Chen, Zhaohong; Cho, Sunghoon; Choi, Wan; Clapham, Peter; Davis-Dusenbery, Brandi N.; De La Vega, Francisco M.; Demeulemeester, Jonas; Dow, Michelle T.; Dursi, Lewis Jonathan; Eils, Juergen; Eils, Roland; Ellrott, Kyle; Farcas, Claudiu; Favero, Francesco; Fayzullaev, Nodirjon; Ferretti, Vincent; Flicek, Paul; Fonseca, Nuno A.; Gelpi, Josep Ll; Getz, Gad; Gibson, Bob; Grossman, Robert L.; Harismendy, Olivier; Heath, Allison P.; Heinold, Michael C.; Hess, Julian M.; Hofmann, Oliver; Hong, Jongwhi H.; Hudson, Thomas J.; Hutter, Barbara; Hutter, Carolyn M.; Huebschmann, Daniel; Imoto, Seiya; Ivkovic, Sinisa; Jeon, Seung-Hyup; Jiao, Wei; Jung, Jongsun; Kabbe, Rolf; Kahles, Andre; Kerssemakers, Jules N. A.; Kim, Hyung-Lae; Kim, Hyunghwan; Kim, Jihoon; Kim, Youngwook; Kleinheinz, Kortine; Koscher, Michael; Koures, Antonios; Kovacevic, Milena; Lawerenz, Chris; Leshchiner, Ignaty; Liu, Jia; Livitz, Dimitri; Mihaiescu, George L.; Mijalkovic, Sanja; Lazic, Ana Mijalkovic; Miyano, Satoru; Miyoshi, Naoki; Nahal-Bose, Hardeep K.; Nakagawa, Hidewaki; Nastic, Mia; Newhouse, Steven J.; Nicholson, Jonathan; O'Connor, Brian D.; Ocana, David; Ohi, Kazuhiro; Ohno-Machado, Lucila; Omberg, Larsson; Ouellette, B. F. Francis; Paramasivam, Nagarajan; Perry, Marc D.; Pihl, Todd D.; Prinz, Manuel; Puiggros, Montserrat; Radovic, Petar; Raine, Keiran M.; Rheinbay, Esther; Rosenberg, Mara; Royo, Romina; Raetsch, Gunnar; Saksena, Gordon; Schlesner, Matthias; Shorser, Solomon, I; Short, Charles; Sofia, Heidi J.; Spring, Jonathan; Stein, Lincoln D.; Struck, Adam J.; Tiao, Grace; Tijanic, Nebojsa; Torrents, David; Van Loo, Peter; Vazquez, Miguel; Vicente, David; Wala, Jeremiah A.; Wang, Zhining; Weischenfeldt, Joachim; Werner, Johannes; Williams, Ashley; Woo, Youngchoon; Wright, Adam J.; Xiang, Qian; Yang, Liming; Yuen, Denis; Yung, Christina K.; Zhang, Junjun

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An open resource for accurately benchmarking small variant and reference calls

NATURE BIOTECHNOLOGY

IF41.7

2019-04-01

207

OAAI

Zook, Justin M.; McDaniel, Jennifer; Olson, Nathan D.; Wagner, Justin; Parikh, Hemang; Heaton, Haynes; Irvine, Sean A.; Trigg, Len; Truty, Rebecca; McLean, Cory, V; De La Vega, Francisco M.; Xiao, Chunlin; Sherry, Stephen; Salit, Marc

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Best practices for benchmarking germline small-variant calls in human genomes (vol 37, pg 555, 2019)

NATURE BIOTECHNOLOGY

IF41.7

2019-03-21

OAAI

Krusche, Peter; Trigg, Len; Boutros, Paul C.; Mason, Christopher E.; De La Vega, Francisco M.; Moore, Benjamin L.; Gonzalez-Porta, Mar; Eberle, Michael A.; Tezak, Zivana; Lababidi, Samir; Truty, Rebecca; Asimenos, George; Funke, Birgit; Fleharty, Mark; Chapman, Brad A.; Salit, Marc; Zook, Justin M.

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Best practices for benchmarking germline small-variant calls in human genomes

NATURE BIOTECHNOLOGY

IF41.7

2019-03-11

207

OAAI

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Polygenic risk scores: a biased prediction?

GENOME MEDICINE

IF11.2

2018-12-27

OAAI

De La Vega, Francisco M.; Bustamante, Carlos D.

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Accurate identification of somatic mutations in cancer patient specimens in the lack of normal tissue by targeted high-throughput sequencing

CANCER RESEARCH

IF16.6

2017-07-01

PREAI

De La Vega, Francisco M.; Irvine, Sean; Ware, David; Gaastra, Kurt; Pouiliot, Yannick; Trigg, Len

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Joint somatic mutation and germline variant identification and scoring from tumor molecular profiling and ct-DNA monitoring of cancer patients by high-throughput sequencing

CANCER RESEARCH

IF16.6

2016-07-15

PREAI

De la Vega, Francisco M.; Koehler, Ryan T.; Pouliot, Yannick; Bouhlal, Yosr; So, Austin; Goodsaid, Federico; Irvine, Sean; Trigg, Len; Nadauld, Lincoln

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Population Genetic Inference from Personal Genome Data: Impact of Ancestry and Admixture on Human Genomic Variation

AMERICAN JOURNAL OF HUMAN GENETICS

IF8.1

2012-10-01

OAAI

Kidd, Jeffrey M.; Gravel, Simon; Byrnes, Jake; Moreno-Estrada, Andres; Musharoff, Shaila; Bryc, Katarzyna; Degenhardt, Jeremiah D.; Brisbin, Abra; Sheth, Vrunda; Chen, Rong; McLaughlin, Stephen F.; Peckham, Heather E.; Omberg, Larsson; Chung, Christina A. Bormann; Stanley, Sarah; Pearlstein, Kevin; Levandowsky, Elizabeth; Acevedo-Acevedo, Suehelay; Auton, Adam; Keinan, Alon; Acuna-Alonzo, Victor; Barquera-Lozano, Rodrigo; Canizales-Quinteros, Samuel; Eng, Celeste; Burchard, Esteban G.; Russell, Archie; Reynolds, Andy; Clark, Andrew G.; Reese, Martin G.; Lincoln, Stephen E.; Butte, Atul T.; De La Vega, Francisco M.; Bustamante, Carlos D.

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Genomics for the world

NATURE

IF48.5

2011-07-13

482

OAAI

Bustamante, Carlos D.; Burchard, Esteban Gonzalez; De La Vega, Francisco M.

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Genome sequencing and analysis of admixed genomes of African and Mexican ancestry: implications for personal ancestry reconstruction and multi-ethnic medical genomics

GENOME BIOLOGY

IF9.4

2010-10-11

OAAI

De La Vega, Francisco M.; Bryc, Katarzyna; Degehnardt, Jeremiah D.; Musharoff, Shaila; Kidd, Jeffrey M.; Seth, Vrunda; Stanley, Sarah; Brisbin, Abra; Keinan, Alon; Clark, Andrew; Bustamante, Carlos D.

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Research Directions