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André M. M. Sousa

University of Wisconsin-Madison

31H-index
81Paper Count
1.1WCitation Count
Published Papers 25
Publication Date
Molecular and cellular processes disrupted in the early postnatal Down syndrome prefrontal cortex
errScience
IF45.8
err2026-04-23
err0
PREAI
errRyan D. Risgaard; Kalpana Hanthanan Arachchilage; Sara A. Knaack; Masoumeh Hosseini; Rachel J. Chen; Pubudu Kumarage; Danielle K. Schmidt; Xiang Huang; Jie Sheng; Carlos J. Wang; Elisa Giusti; Shuang Liu; Su-Chun Zhang; Daifeng Wang; Anita Bhattacharyya; Andre M. M. Sousa
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Adaptive evolution of gene regulatory networks in mammalian neocortex
errNature
IF48.5
err2026-03-18
err0
errOAAI
errZhuo Li; Navjot Kaur; Gabriel Santpere; Sydney K. Muchnik; Suvimal Kumar Sindhu; Cai Qi; Mikihito Shibata; Olivier Clément; Thomas S. Klarić; Xabier de Martin; Victor Luria; Hyesun Cho; Mingfeng Li; Akemi Shibata; Sang-Hun Choi; Hyojin Kim; Andrew T. N. Tebbenkamp; Shaojie Ma; Wenqi Han; Suel-Kee Kim; Sirisha Pochareddy; Phan Q. Duy; Xiaojun Xing; Yunhua Bao; Xuming Xu; Ivan Enghian Gladwyn-Ng; Hayley Daniella Cullen; Annalisa Paolino; Laura R. Fenlon; Peter Kozulin; Rodrigo Suárez; Ryan D. Risgaard; Forrest O. Gulden; Amir Karger; Ikuo K. Suzuki; Tatsumi Hirata; Kevin T. Gobeske; Linda J. Richards; André M. M. Sousa; Julian I.-T. Heng; Nenad Sestan
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Development of Molecular Neuropathology in Down Syndrome across the Lifespan
err2025-11-12
err0
PREAI
errBhattacharyya, Anita; de la Torre-ubieta, Luis; Zhu, Ying; Head, Elizabeth; Swarup, Vivek; Sousa, Andre M. M.
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A human-specific enhancer fine-tunes radial glia potency and corticogenesis
errNATURE
IF48.5
err2025-05-14
err0
errOAAI
errLiu, Jing; Mosti, Federica; Zhao, Hanzhi T.; Lollis, Davoneshia; Sotelo-Fonseca, Jesus E.; Escobar-Tomlienovich, Carla F.; Musso, Camila M.; Mao, Yiwei; Massri, Abdull J.; Doll, Hannah M.; Moss, Nicole D.; Sousa, Andre M. M.; Wray, Gregory A.; Schmidt, Ewoud R. E.; Silver, Debra L.
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Consequences of trisomy 21 for brain development in Down syndrome
err2024-10-08
err0
PREAI
errRusso, Matthew L.; Sousa, Andre M. M.; Bhattacharyya, Anita
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Evolutionary innovations in the primate dopaminergic system
err2024-10-01
err2
errOAAI
errDoll, Hannah M.; Risgaard, Ryan D.; Thurston, Hailey; Chen, Rachel J.; Sousa, Andre M. M.
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CGG repeats in the human FMR1 gene regulate mRNA localization and cellular stress in developing neurons
err2024-06-01
err1
errOAAI
errSirois, Carissa L.; Guo, Yu; Li, Meng; Wolkoff, Natalie E.; Korabelnikov, Tomer; Sandoval, Soraya; Lee, Jiyoun; Shen, Minjie; Contractor, Amaya; Sousa, Andre M. M.; Bhattacharyya, Anita; Zhao, Xinyu
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Rigor and reproducibility in human brain organoid research: Where we are and where we need to go
err2024-06-01
err10
errOAAI
errSandoval, Soraya O.; Cappuccio, Gerarda; Kruth, Karina; Osenberg, Sivan; Khalil, Saleh M.; Mendez-Albelo, Natasha M.; Padmanabhan, Krishnan; Wang, Daifeng; Niciu, Mark J.; Bhattacharyya, Anita; Stein, Jason L.; Sousa, Andre M. M.; Waxman, Elisa A.; Buttermore, Elizabeth D.; Whye, Dosh; Sirois, Carissa L.; Williams, Aislinn; Maletic-Savatic, Mirjana; Zhao, Xinyu
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A novel SMARCC1 BAFopathy implicates neural progenitor epigenetic dysregulation in human hydrocephalus
errBRAIN
IF11.7
err2023-12-21
err4
PREAI
errSingh, Amrita K.; Allington, Garrett; Viviano, Stephen; McGee, Stephen; Kiziltug, Emre; Ma, Shaojie; Zhao, Shujuan; Mekbib, Kedous Y.; Shohfi, John P.; Duy, Phan Q.; DeSpenza, Tyrone; Furey, Charuta G.; Reeves, Benjamin C.; Smith, Hannah; Sousa, Andre M. M.; Cherskov, Adriana; Allocco, August; Nelson-Williams, Carol; Haider, Shozeb; Rizvi, Syed R. A.; Alper, Seth L.; Sestan, Nenad; Shimelis, Hermela; Walsh, Lauren K.; Lifton, Richard P.; Moreno-De-Luca, Andres; Jin, Sheng Chih; Kruszka, Paul; Deniz, Engin; Kahle, Kristopher T.
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Human-specific features and developmental dynamics of the brain N-glycome
err2023-12-08
err2
errOAAI
errKlaric, Thomas S.; Gudelj, Ivan; Santpere, Gabriel; Novokmet, Mislav; Vuckovic, Frano; Ma, Shaojie; Doll, Hannah M.; Risgaard, Ryan; Bathla, Shveta; Karger, Amir; Nairn, Angus C.; Luria, Victor; Beceheli, Ivona; Sherwood, Chet C.; Ely, John J.; Hof, Patrick R.; Sousa, Andre M. M.; Josic, Djuro; Lauc, Gordan; Sestan, Nenad
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Species-specific FMRP regulation of RACK1 is critical for prenatal cortical development
errNEURON
IF15
err2023-12-01
err12
errOAAI
errShen, Minjie; Sirois, Carissa L.; Guo, Yu; Li, Meng; Dong, Qiping; Mendez-Albelo, Natasha M.; Gao, Yu; Khullar, Saniya; Kissel, Lee; Sandoval, Soraya O.; Wolkoff, Natalie E.; Huang, Sabrina X.; Xu, Zhiyan; Bryan, Jonathan E.; Contractor, Amaya M.; Korabelnikov, Tomer; Glass, Ian A.; Doherty, Dan; Levine, Jon E.; Sousa, Andre M. M.; Chang, Qiang; Bhattacharyya, Anita; Wang, Daifeng; Werling, Donna M.; Zhao, Xinyu
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Generation of locus coeruleus norepinephrine neurons from human pluripotent stem cells
err2023-11-16
err5
errOAAI
errTao, Yunlong; Li, Xueyan; Dong, Qiping; Kong, Linghai; Petersen, Andrew J.; Yan, Yuanwei; Xu, Ke; Zima, Seth; Li, Yanru; Schmidt, Danielle K.; Ayala, Melvin; Mathivanan, Sakthikumar; Sousa, Andre M. M.; Chang, Qiang; Zhang, Su-Chun
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Elevated levels of FMRP-target MAP1B impair human and mouse neuronal development and mouse social behaviors via autophagy pathway
err2023-06-26
err11
errOAAI
errGuo, Yu; Shen, Minjie; Dong, Qiping; Mendez-Albelo, Natasha M.; Huang, Sabrina X.; Sirois, Carissa L.; Le, Jonathan; Li, Meng; Jarzembowski, Ezra D.; Schoeller, Keegan A.; Stockton, Michael E.; Horner, Vanessa L.; Sousa, Andre M. M.; Gao, Yu; Levine, Jon E.; Wang, Daifeng; Chang, Qiang; Zhao, Xinyu; Glass, Ian A.; Doherty, Dan
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BOMA, a machine-learning framework for comparative gene expression analysis across brains and organoids
err2023-02-01
err10
errOAAI
errHe, Chenfeng; Kalafut, Noah Cohen; Sandoval, Soraya O.; Risgaard, Ryan; Sirois, Carissa L.; Yang, Chen; Khullar, Saniya; Suzuki, Marin; Huang, Xiang; Chang, Qiang; Zhao, Xinyu; Sousa, Andre M. M.; Wang, Daifeng
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Altered patterning of trisomy 21 interneuron progenitors
err2022-06-01
err17
errOAAI
errGiffin-Rao, Yathindar; Sheng, Jie; Strand, Bennett; Xu, Ke; Huang, Leslie; Medo, Margaret; Risgaard, Kirstin A.; Dantinne, Samuel; Mohan, Sruti; Keshan, Aratrika; Daley, Roger A., Jr.; Levesque, Bradley; Amundson, Lindsey; Reese, Rebecca; Sousa, Andre M. M.; Tao, Yunlong; Wang, Daifeng; Zhang, Su-Chun; Bhattacharyya, Anita
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Transcriptomic taxonomy and neurogenic trajectories of adult human, macaque, and pig hippocampal and entorhinal cells
errNEURON
IF15
err2022-02-01
err169
errOAAI
errFranjic, Daniel; Skarica, Mario; Ma, Shaojie; Arellano, Jon, I; Tebbenkamp, Andrew T. N.; Choi, Jinmyung; Xu, Chuan; Li, Qian; Morozov, Yury M.; Andrijevic, David; Vrselja, Zvonimir; Spajic, Ana; Santpere, Gabriel; Li, Mingfeng; Zhang, Shupei; Liu, Yang; Spurrier, Joshua; Zhang, Le; Gudelj, Ivan; Rapan, Lucija; Takahashi, Hideyuki; Huttner, Anita; Fan, Rong; Strittmatter, Stephen M.; Sousa, Andre M. M.; Rakic, Pasko; Sestan, Nenad
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Rewiring of human neurodevelopmental gene regulatory programs by human accelerated regions
errNEURON
IF15
err2021-10-01
err90
errOAAI
errGirskis, Kelly M.; Stergachis, Andrew B.; DeGennaro, Ellen M.; Doan, Ryan N.; Qian, Xuyu; Johnson, Matthew B.; Wang, Peter P.; Sejourne, Gabrielle M.; Nagy, M. Aurel; Pollina, Elizabeth A.; Sousa, Andre M. M.; Shin, Taehwan; Kenny, Connor J.; Scotellaro, Julia L.; Debo, Brian M.; Gonzalez, Dilenny M.; Rento, Lariza M.; Yeh, Rebecca C.; Song, Janet H. T.; Beaudin, Marc; Fan, Jean; Kharchenko, Peter, V; Sestan, Nenad; Greenberg, Michael E.; Walsh, Christopher A.
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Whole-Genome and RNA Sequencing Reveal Variation and Transcriptomic Coordination in the Developing Human Prefrontal Cortex
err2020-04-01
err89
errOAAI
errWerling, Donna M.; Pochareddy, Sirisha; Choi, Jinmyung; An, Joon-Yong; Sheppard, Brooke; Peng, Minshi; Li, Zhen; Dastmalchi, Claudia; Santpere, Gabriel; Sousa, Andre M. M.; Tebbenkamp, Andrew T. N.; Kaur, Navjot; Gulden, Forrest O.; Breen, Michael S.; Liang, Lindsay; Gilson, Michael C.; Zhao, Xuefang; Dong, Shan; Klei, Lambertus; Cicek, A. Ercument; Buxbaum, Joseph D.; Adle-Biassette, Homa; Thomas, Jean-Leon; Aldinger, Kimberly A.; O'Day, Diana R.; Glass, Ian A.; Zaitlen, Noah A.; Talkowski, Michael E.; Roeder, Kathryn; State, Matthew W.; Devlin, Bernie; Sanders, Stephan J.; Sestan, Nenad
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Evolution of the Human Nervous System Function, Structure, and Development
errCELL
IF42.5
err2017-07-01
err320
errOAAI
errSousa, Andre M. M.; Meyer, Kyle A.; Santpere, Gabriel; Gulden, Forrest O.; Sestan, Nenad
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Scaling the Internet Routing System Through Distributed Route Aggregation
err2016-12-01
err2
errOAAI
errSobrinho, Joao Luis; Vanbever, Laurent; Le, Franck; Sousa, Andre; Rexford, Jennifer
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