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H. Bradley Shaffer

university of california santa cruz

73H-index
318Paper Count
1.5WCitation Count
Published Papers 124
Publication Date
A chromosome-level genome assembly of a vernal pool specialist amphibian, the Western Spadefoot, Spea hammondii
err2026-04-08
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errOAAI
errBen Thompsky; Eric Beraut; Robert D Cooper; Merly Escalona; Robert E Espinoza; Robert N Fisher; Courtney Miller; Oanh Nguyen; Samuel Sacco; Ruta Sahasrabudhe; William E Seligmann; Erin Tofflemier; Ian J Wang; H Bradley Shaffer
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The genome assemblies of the Tui chub, Siphateles bicolor, and Arroyo chub, Gila orcuttii
err2026-03-01
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PREAI
errBaker, Henry K.; Payne, Cheyenne Y.; Escalona, Merly; Rodzen, Jeff; Parmenter, Steve; Barabe, Russell M.; Ingel, Claire; Marimuthu, Mohan P. A.; Nguyen, Oanh; Chumchim, Noravit; Beraut, Eric; Sacco, Samuel; Seligmann, William; Fairbairn, Colin W.; Cooper, Robert D.; Miller, Courtney; Toffelmier, Erin; Garza, J. Carlos; Shaffer, H. Bradley; Rennison, Diana J.; Shurin, Jonathan B.
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Reassessing Hybrid Vigor or Hybrid Dysfunction Using Physiological Trade-Offs in an Endangered Salamander System
err2026-01-01
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PREAI
errFitzpatrick, Benjamin M.; Carter, Evin T.; Hayter, Lindsey E.; Chaney, Matthew J.; Eads, Bryan C.; Shaffer, H. Bradley
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Genome Assembly for the Sierra Nevada Parnassian ( <i>Parnassius behrii</i> ) and a Brief Review of Butterfly Genome Sizes
err2025-12-16
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errOAAI
errZachary G MacDonald; Joseph N Curti; Robert Cooper; Sean D Schoville; Merly Escalona; Noravit Chumchim; Colin W Fairbairn; Erin Toffelmier; Courtney Miller; Mohan P A Marimuthu; Oanh Nguyen; William Seligmann; Thomas W Gillespie; H Bradley Shaffer
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A genome assembly of the California flannelbush, Fremontodendron californicum
err2025-12-01
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PREAI
errMcMahan, William T.; Escalona, Merly; Kenny, Reed; Marimuthu, Mohan P. A.; Nguyen, Oanh; Fairbairn, Colin W.; Seligmann, William; Miller, Courtney; Shaffer, Howard Bradley; Still, Shannon; Potter, Daniel
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A chromosome level genome assembly of the marine flowering plant, Torrey's surfgrass (Phyllospadix Torreyi) reveals an exceptionally large Y-chromosome
err2025-12-01
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PREAI
errJohns, Jason; Moore, Malia L.; Escalona, Merly; Miller, Courtney; Chumchim, Noravit; Nguyen, Oanh; Marimuthu, Mohan P. A.; Fairbairn, Colin W.; Beraut, Eric; Seligmann, William E.; Sacco, Samuel; Toffelmier, Erin; Shaffer, H. Bradley; Michael, Todd P.; Hodges, Scott
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Genome resources-A chromosome-level genome assembly for the long-nosed leopard lizard, Gambelia wislizenii, the first reference genome for the lizard family Crotaphytidae
err2025-12-01
err0
errOAAI
errMcGuire, Jimmy A.; Richmond, Jonathan Q.; Escalona, Merly; Marimuthu, Mohan P. A.; Nguyen, Oanh; Sacco, Samuel; Beraut, Eric; Toffelmier, Erin; Cooper, Robert D.; Westphal, Michael; Fisher, Robert N.; Wang, Ian J.; Shaffer, H. Bradley
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Genome assembly and annotation of a deep-diving pinniped, the northern elephant seal (Mirounga angustirostris)
err2025-11-01
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PREAI
errRivera, Milagros G.; Escalona, Merly; Garza, John Carlos; Miller, Courtney; Beraut, Eric; Fairbairn, Colin; Sacco, Samuel; Seligmann, William E.; Sahasrabudhe, Ruta; Nguyen, Oanh; Toffelmier, Erin; Shaffer, H. Bradley; Costa, Daniel P.; Beltran, Roxanne S.; Meyer, Rachel S.
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A reference genome for Colusa grass, Neostapfia colusana, a threatened and endangered California vernal pool plant
err2025-11-01
err1
PREAI
errPennington, Lillie K.; Escalona, Merly; J Toews, Daniel; Chumchim, Noravit; Cooper, Robert; Fairbairn, Colin W.; Marimuthu, Mohan P. A.; Miller, Courtney; Nguyen, Oanh H.; Ruiz-Ramos, Dannise; Seligmann, William E.; Stephens, Molly; Toffelmier, Erin; Shaffer, H. Bradley; Meyer, Rachel S.; Sexton, Jason P.
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A genome assembly of Greene's tuctoria, Tuctoria greenei, an amphibious endemic and endangered California vernal pool grass
err2025-11-01
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errOAAI
errToews, Daniel J.; Escalona, Merly; Pennington, Lillie K.; Chumchim, Noravit; Fairbairn, Colin W.; Marimuthu, Mohan P. A.; Miller, Courtney; Nguyen, Oanh H.; Ruiz-Ramos, Dannise; Seligmann, William E.; Stephens, Molly; Cooper, Robert D.; Toffelmeier, Erin; Shaffer, H. Bradley; Meyer, Rachel S.; Sexton, Jason P.
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Building genomically-informed demographic models to guide management of invasive hybrids
err2025-10-23
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errOAAI
errRobert D. Cooper; Arianne F. Messerman; Christopher A. Searcy; Erin Toffelmier; Gregory F. Grether; H. Bradley Shaffer
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A genome assembly of the California poppy, Eschscholzia californica
err2025-09-01
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errOAAI
errNguyen, Peter T.; Escalona, Merly; Ryan, Elizabeth; Miller, Courtney; Marimuthu, Mohan P. A.; Fairbairn, Colin W.; Seligmann, William; Chumchim, Noravit; Nguyen, Oanh; Toffelmier, Erin; Shaffer, H. Bradley; Sexton, Jason P.; Cleland, Elsa E.
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A chromosome-level reference genome assembly for Gilbert's skink Plestiodon gilberti
err2025-08-01
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errOAAI
errRichmond, Jonathan Q.; Escalona, Merly; Marimuthu, Mohan P. A.; Nguyen, Oanh; Sacco, Samuel; Beraut, Eric; Toffelmier, Erin; Karin, Benjamin R.; Cooper, Robert D.; Fisher, Robert N.; Wang, Ian J.; Shaffer, H. Bradley
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The genome assembly of the duckweed fern, Azolla caroliniana
err2025-07-01
err1
PREAI
errSong, Michael J.; Rizzieri, Yana C.; Li, Fay-Wei; Freund, Forrest; Escalona, Merly; Toffelmier, Erin; Miller, Courtney; Shaffer, H. Bradley; Nguyen, Oanh; Marimuthu, Mohan P. A.; Chumchim, Noravit; Tribble, Carrie; Fairbairn, Colin W.; Seligmann, William; Rothfels, Carl J.
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A near chromosome-level assembly of the serpentine endemic columbine, Aquilegia eximia
err2025-07-01
err0
errOAAI
errJohns, Jason; Escalona, Merly; Miller, Courtney; Chumchim, Noravit; Nguyen, Oanh; Marimuthu, Mohan P. A.; Sacco, Samuel; Fairbairn, Colin; Beraut, Eric; Toffelmier, Erin; Shaffer, H. Bradley; Hodges, Scott
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Reference genome of the Gophersnake, Pituophis catenifer (Serpentes: Colubridae)
err2025-05-04
err0
PREAI
errGrismer, Jesse L.; Escalona, Merly; Miller, Courtney; Marimuthu, Mohan P. A.; Nguyen, Oanh; Beraut, Eric; Sacco, Sam; Toffelmier, Erin; Cooper, Robert D.; Wang, Ian J.; Fisher, Robert N.; Shaffer, H. Bradley
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Non-lethal effects of climate change and infectious disease: An energetics approach to understanding population impacts
err2025-01-22
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errOAAI
errDaversa, David R.; Lloyd-Smith, James O.; Bucciarelli, Gary M.; Shaffer, H. Bradley; Blumstein, Daniel T.
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Phylogenomics reveal species limits and inter-relationships in the narrow-range endemic lycian salamanders
err2025-01-01
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PREAI
errScott, Peter A.; Najafi-Majd, Elnaz; Caynak, Elif Yildirim; Gidis, Muege; Kaya, Ugur; Shaffer, H. Bradley
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Genome assembly of the winter ant, Prenolepis imparis
err2024-12-09
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errOAAI
errCash, Elizabeth, I; Ward, Philip S.; Escalona, Merly; Sahasrabudhe, Ruta; Miller, Courtney; Toffelmier, Erin; Fairbairn, Colin; Seligmann, William; Shaffer, H. Bradley; Tsutsui, Neil D.
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