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Michael C. Schatz

 johns hopkins university

100H-index
438Paper Count
6.3WCitation Count
Published Papers 140
Publication Date
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Assembling unmapped reads reveals hidden variation in South Asian genomes
errNature Communications
IF15.7
err2026-04-10
err0
errOAAI
errArun Das; Arjun Biddanda; Rajiv C. McCoy; Michael C. Schatz
errShare
errSave
Learning Explainable Imaging-Genetics Associations Related to a Neurological Disorder
errMEDICAL IMAGE COMPUTING AND COMPUTER ASSISTED INTERVENTION - MICCAI 2025, PT XI
IF0
err2026-01-01
err0
PREAI
errWang, Jueqi; Jacokes, Zachary; Van Horn, John Darrell; Schatz, Michael C.; Pelphrey, Kevin A.; Venkataraman, Archana
errShare
errSave
Unearthing soil biodiversity through collaborative genomic research and education
errNature Genetics
IF29
err2025-12-29
err0
PREAI
errTristen Alberts; Claude F. Albritton; Rosa Alcazar; Zainab Aljabri; Maria Alvarez; Anish Aradhey; Mentewab Ayalew; Nareh Azizian; Yasmeen Balayah; Destiny D. Ball; Efren Barragan; Corey Beshoar; Lyle Best; Emily Biggane; Joseph Biggane; Jesse Blick; Myron Blosser; Alex Kenneth Brown; Michael C. Campbell; Zoe Canizares; Faith N. Chanhuhwa; Yu Chen; Daniel R. Chin; Kamal Chowdhury; Tyler Collins; Blair Compton; Jefferson Da Silva; Nia R. Davis; Natalie DeCaro; Frida Delgadillo; Youping Deng; Joceph Duncan; Arinzechukwu C. Egwu; Grace D. Ekalle; Noha Elnawam; Ray Enke; Naomi Ewhe; Marco A. Ferrel; Janna Fierst; Grace Freymiller; Karla Fuller; Lena Fulton-Wright; Valeriya Gaysinskaya; Torrence Gill; Ellie Gillespie; Perla Gonzalez Moreno; Sara Goodwin; Natajha Graham; Madeline E. Graham; Joseph L. Graves; Emily Grob; Rachael Gutierrez; Aisha Hager; Shazia Tabassum Hakim; Aaliyah Harris; Ava M. Hoffman; Tobias Hoffmann; Alani M. Horton; Allison Hughes; Elizabeth M. Humphries; Josh-Samuel Ikechi-Konkwo; Aadil Ishtiaq; Ryan Jackson; Joshua Ronnie James; Kaitlan James; Sydney A. Jamison; Armando Jimenez; Rachel Johnson; Abigail Kauffman; Harkiran Kaur; Kritika Kc; Analyse Keeton; Olivia E. Kelly; Jennifer Kerr; Nataliya Kucher; Donna Lee Kuehu; Wendy A. Larson; Joslynn Lee; Andrew Lee; Jeffrey T. Leek; Danilo Lemaic; Lincoln E. Liburd; Alan Fernando Lopez; Mohammadamin Mahmanzar; Karwitha Mamae; Raffi Manjikian; Michael Marone; Katerin Marquez; Amara Martinson; Senem Mavruk Eskipehlivan; Ashley Medrano; Melanie Melendrez-Vallard; Robert Meller; Loyda B. Méndez; Miguel P. Mendez Gonzalez; Nicolli Mesquita; Concepcion Martinez Miller; Isam Mohd-Ibrahim; Peter Mortensen; Stephen Mosher; Alketa Muja; Nadia Nasrin; Masaki Nasu; Matthew H. Nguyen; Ba Thong Nguyen; Michele Nishiguchi; Lance M. O’Connor; Disomi Okie; Tolulope Olowookorun; Alex Ostrovsky; Keyan Ozuna; Asmita Pandey; Shiv B. Patel; Gauri Paul; Shrikant Pawar; Andrea Pearson; Deborah Petrik; Jordan Platero; Carl Pontino; Arjun P. Pratap; Siddharth Pratap; Yujia Qin; Sudhir Kumar Rai; Nisttha Ray; Ethan Repesh; Kristen Rhinehardt; Brennan Roche; Ariana Rodriguez; Shriya Roy; Sourav Roy; Alexa Sawa; Michael C. Schatz; Shurjo K. Sen; Randon Serikawa; Tyler Smith; Loraye Smith; James Sniezek; Ryley D. Stewart; Edu B. Suarez-Martinez; Joelle Taganna; Frederick J. Tan; Nikolaos Tsotakos; Nwanneka Udolisa; Katherine Ulbricht; Tanner Veo; Jennifer Vessio; Lia Walker; Oscar Wang; Qingguo Wang; Robert Wappel; Kalynn Wesby; Malachi Whitford; Nicole Wild; Xianfa Xie; Hua Yang; Sayumi York; Lindsay Zirkle
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errSave
Engineering compact Physalis peruviana (goldenberry) to promote its potential as a global crop
errPLANTS, PEOPLE, PLANET
IF0
err2025-12-04
err0
errOAAI
errMiguel Santo Domingo; Blaine Fitzgerald; Gina M. Robitaille; Srividya Ramakrishnan; Kerry Swartwood; Nicholas G. Karavolias; Michael C. Schatz; Joyce Van Eck; Zachary B. Lippman
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errSave
Comparative genomics of the parasite Trichomonas vaginalis reveals genes involved in spillover from birds to humans
errNature Communications
IF15.7
err2025-07-24
err0
errOAAI
errSteven A. Sullivan; Jordan C. Orosco; Francisco Callejas-Hernández; Frances Blow; Hayan Lee; T. Rhyker Ranallo-Benavidez; Andrew Peters; Shane R. Raidal; Yvette A. Girard; Christine K. Johnson; Krysta H. Rogers; Richard Gerhold; Hayley Mangelson; Ivan Liachko; Harsh Srivastava; Chris Chandler; Daniel Berenberg; Richard A. Bonneau; Po-Jung Huang; Yuan-Ming Yeh; Chi-Ching Lee; Hsuan Liu; Ting-Wen Chen; Petrus Tang; Cheng-Hsun Chiu; Michael C. Schatz; Jane M. Carlton
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errSave
Author Correction: MaizeCODE reveals bi-directionally expressed enhancers that harbor molecular signatures of maize domestication
errNature Communications
IF15.7
err2025-07-23
err0
errOAAI
errJonathan Cahn; Michael Regulski; Jason Lynn; Evan Ernst; Cristiane de Santis Alves; Srividya Ramakrishnan; Kapeel Chougule; Sharon Wei; Zhenyuan Lu; Xiaosa Xu; Umamaheswari Ramu; Jorg Drenkow; Cassiday Dankyo; Melissa Kramer; Arun Seetharam; Matthew B. Hufford; W. Richard McCombie; Doreen Ware; David Jackson; Michael C. Schatz; Thomas R. Gingeras; Robert A. Martienssen
errShare
errSave
Solanum pan-genetics reveals paralogues as contingencies in crop engineering
errNATURE
IF48.5
err2025-03-05
err1
errOAAI
errBenoit, Matthias; Jenike, Katharine M.; Satterlee, James W.; Ramakrishnan, Srividya; Gentile, Iacopo; Hendelman, Anat; Passalacqua, Michael J.; Suresh, Hamsini; Shohat, Hagai; Robitaille, Gina M.; Fitzgerald, Blaine; Alonge, Michael; Wang, Xingang; Santos, Ryan; He, Jia; Ou, Shujun; Golan, Hezi; Green, Yumi; Swartwood, Kerry; Karavolias, Nicholas G.; Sierra, Gina P.; Orejuela, Andres; Roda, Federico; Goodwin, Sara; Mccombie, W. Richard; Kizito, Elizabeth B.; Gagnon, Edeline; Knapp, Sandra; Saerkinen, Tiina E.; Frary, Amy; Gillis, Jesse; Van Eck, Joyce; Schatz, Michael C.; Lippman, Zachary B.
errShare
errSave
k-mer approaches for biodiversity genomics
errGENOME RESEARCH
IF5.5
err2025-01-31
err0
PREAI
errJenike, Katharine M.; Campos-Dominguez, Lucia; Bodde, Marilou; Cerca, Jose; Hodson, Christina N.; Schatz, Michael C.; Jaron, Kamil S.
errShare
errSave
Gapless assembly of complete human and plant chromosomes using only nanopore sequencing
errGENOME RESEARCH
IF5.5
err2024-11-06
err5
errOAAI
errKoren, Sergey; Bao, Zhigui; Guarracino, Andrea; Ou, Shujun; Goodwin, Sara; Jenike, Katharine M.; Lucas, Julian; Mcnulty, Brandy; Park, Jimin; Rautiainen, Mikko; Rhie, Arang; Roelofs, Dick; Schneiders, Harrie; Vrijenhoek, Ilse; Nijbroek, Koen; Nordesjo, Olle; Nurk, Sergey; Vella, Mike; Lawrence, Katherine R.; Ware, Doreen; Schatz, Michael C.; Garrison, Erik; Huang, Sanwen; Mccombie, William Richard; Miga, Karen H.; Wittenberg, Alexander H. J.; Phillippy, Adam M.
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errSave
High-coverage nanopore sequencing of samples from the 1000 Genomes Project to build a comprehensive catalog of human genetic variation
errGENOME RESEARCH
IF5.5
err2024-10-02
err7
PREAI
errGustafson, Jonas A.; Gibson, Sophia B.; Damaraju, Nikhita; Zalusky, Miranda P. G.; Hoekzema, Kendra; Twesigomwe, David; Yang, Lei; Snead, Anthony A.; Richmond, Phillip A.; De Coster, Wouter; Olson, Nathan D.; Guarracino, Andrea; Li, Qiuhui; Miller, Angela L.; Goffena, Joy; Anderson, Zachary B.; Storz, Sophie H. R.; Ward, Sydney A.; Sinha, Maisha; Gonzaga-Jauregui, Claudia; Clarke, Wayne E.; Basile, Anna O.; Corvelo, Andre; Reeves, Catherine; Helland, Adrienne; Musunuri, Rajeeva Lochan; Revsine, Mahler; Patterson, Karynne E.; Paschal, Cate R.; Zakarian, Christina; Goodwin, Sara; Jensen, Tanner D.; Robb, Esther; McCombie, William Richard; Sedlazeck, Fritz J.; Zook, Justin M.; Montgomery, Stephen B.; Garrison, Erik; Kolmogorov, Mikhail; Schatz, Michael C.; McLaughlin Jr, Richard N.; Dashnow, Harriet; Zody, Michael C.; Loose, Matt; Jain, Miten; Eichler, Evan E.; Miller, Danny E.
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errSave
Differences in activity and stability drive transposable element variation in tropical and temperate maize
errGENOME RESEARCH
IF5.5
err2024-09-09
err3
PREAI
errOu, Shujun; Scheben, Armin; Collins, Tyler; Qiu, Yinjie; Seetharam, Arun S.; Menard, Claire C.; Manchanda, Nancy; Gent, Jonathan I.; Schatz, Michael C.; Anderson, Sarah N.; Hufford, Matthew B.; Hirsch, Candice N.
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errSave
Beyond the Human Genome Project: The Age of Complete Human Genome Sequences and Pangenome References
errannual review of genetics
IF7.9
err2024-08-27
err1
errOAAI
errTaylor, Dylan J.; Eizenga, Jordan M.; Li, Qiuhui; Das, Arun; Jenike, Katharine M.; Kenny, Eimear E.; Miga, Karen H.; Monlong, Jean; Mccoy, Rajiv C.; Paten, Benedict; Schatz, Michael C.
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errSave
Interspecies regulatory landscapes and elements revealed by novel joint systematic integration of human and mouse blood cell epigenomes
errGENOME RESEARCH
IF5.5
err2024-07-01
err0
errOAAI
errXiang, Guanjue; He, Xi; Giardine, Belinda M.; Isaac, Kathryn J.; Taylor, Dylan J.; Mccoy, Rajiv C.; Jansen, Camden; Keller, Cheryl A.; Wixom, Alexander Q.; Cockburn, April; Miller, Amber; Qi, Qian; He, Yanghua; Li, Yichao; Lichtenberg, Jens; Heuston, Elisabeth F.; Anderson, Stacie M.; Luan, Jing; Vermunt, Marit W.; Yue, Feng; Sauria, Michael E. G.; Schatz, Michael C.; Taylor, James; Goettgens, Berthold; Hughes, Jim R.; Higgs, Douglas R.; Weiss, Mitchell J.; Cheng, Yong; Blobel, Gerd A.; Bodine, David M.; Zhang, Yu; Li, Qunhua; Mahony, Shaun; Hardison, Ross C.
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errSave
Utility of long-read sequencing for All of Us
errNATURE COMMUNICATIONS
IF15.7
err2024-01-29
err8
errOAAI
errMahmoud, M.; Huang, Y.; Garimella, K.; Audano, P. A.; Wan, W.; Prasad, N.; Handsaker, R. E.; Hall, S.; Pionzio, A.; Schatz, M. C.; Talkowski, M. E.; Eichler, E. E.; Levy, S. E.; Sedlazeck, F. J.
errShare
errSave
Scalable, accessible and reproducible reference genome assembly and evaluation in Galaxy
errNATURE BIOTECHNOLOGY
IF41.7
err2024-01-26
err2
errOAAI
errLariviere, Delphine; Abueg, Linelle; Brajuka, Nadolina; Gallardo-Alba, Cristobal; Gruening, Bjorn; Ko, Byung June; Ostrovsky, Alex; Palmada-Flores, Marc; Pickett, Brandon D.; Rabbani, Keon; Antunes, Agostinho; Balacco, Jennifer R.; Chaisson, Mark J. P.; Cheng, Haoyu; Collins, Joanna; Couture, Melanie; Denisova, Alexandra; Fedrigo, Olivier; Gallo, Guido Roberto; Giani, Alice Maria; Gooder, Grenville MacDonald; Horan, Kathleen; Jain, Nivesh; Johnson, Cassidy; Kim, Heebal; Lee, Chul; Marques-Bonet, Tomas; O'Toole, Brian; Rhie, Arang; Secomandi, Simona; Sozzoni, Marcella; Tilley, Tatiana; Uliano-Silva, Marcela; van den Beek, Marius; Williams, Robert W.; Waterhouse, Robert M.; Phillippy, Adam M.; Jarvis, Erich D.; Schatz, Michael C.; Nekrutenko, Anton; Formenti, Giulio
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errSave
Long-Read Sequencing Reveals Rapid Evolution of Immunity- and Cancer-Related Genes in Bats
errGENOME BIOLOGY AND EVOLUTION
IF2.8
err2023-09-20
err22
errOAAI
errScheben, Armin; Ramos, Olivia Mendivil; Kramer, Melissa; Goodwin, Sara; Oppenheim, Sara; Becker, Daniel J.; Schatz, Michael C.; Simmons, Nancy B.; Siepel, Adam; McCombie, W. Richard
errShare
errSave
Characterization of large-scale genomic differences in the first complete human genome
errGENOME BIOLOGY
IF9.4
err2023-07-04
err4
errOAAI
errYang, Xiangyu; Wang, Xuankai; Zou, Yawen; Zhang, Shilong; Xia, Manying; Fu, Lianting; Vollger, Mitchell. R. R.; Chen, Nae-Chyun; Taylor, Dylan. J. J.; Harvey, William. T. T.; Logsdon, Glennis. A. A.; Meng, Dan; Shi, Junfeng; McCoy, Rajiv. C. C.; Schatz, Michael. C. C.; Li, Weidong; Eichler, Evan. E. E.; Lu, Qing; Mao, Yafei
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errSave
Genome analyses reveal population structure and a purple stigma color gene candidate in finger millet
errNATURE COMMUNICATIONS
IF15.7
err2023-06-21
err19
errOAAI
errDevos, Katrien M.; Qi, Peng; Bahri, Bochra A.; Gimode, Davis M.; Jenike, Katharine; Manthi, Samuel J.; Lule, Dagnachew; Lux, Thomas; Martinez-Bello, Liliam; Pendergast, Thomas H.; Plott, Chris; Saha, Dipnarayan; Sidhu, Gurjot S.; Sreedasyam, Avinash; Wang, Xuewen; Wang, Hao; Wright, Hallie; Zhao, Jianxin; Deshpande, Santosh; de Villiers, Santie; Dida, Mathews M.; Grimwood, Jane; Jenkins, Jerry; Lovell, John; Mayer, Klaus F. X.; Mneney, Emmarold E.; Ojulong, Henry F.; Schatz, Michael C.; Schmutz, Jeremy; Song, Bo; Tesfaye, Kassahun; Odeny, Damaris A.
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errSave
National Human Genome Research Institute Genomic Data Science Analysis, Visualization, and Informatics Lab-Space: Reaching out to Clinicians
errCIRCULATION-GENOMIC AND PRECISION MEDICINE
IF5.5
err2023-06-01
err1
errOAAI
errHall, Jennifer L.; Honeycutt, Sally; Gonzalez, Nicole; O'Donnell-Luria, Anne; Taylor, Casey Overby; Stevens, Laura; Philippakis, Anthony A.; Schatz, Michael C.
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errSave
Multicentre genetic diversity study of carbapenem-resistant Enterobacterales: predominance of untypeable pUVA-like blaKPC bearing plasmids
errJAC-ANTIMICROBIAL RESISTANCE
IF3.3
err2023-05-26
err0
errOAAI
errSimner, Patricia J.; Bergman, Yehudit; Fan, Yunfan; Jacobs, Emily B.; Ramakrishnan, Srividya; Lu, Jennifer; Lewis, Shawna; Hanlon, Ann; Tamma, Pranita D.; Schatz, Michael C.; Timp, Winston; Carroll, Karen C.
errShare
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Research Directions

No research directions
Co-authors
Cooperation Journals
E
Evan E. Eichler
H-index: 191 · Papers: 864
M
Mark Gerstein
H-index: 191 · Papers: 1.2K
R
Richard A. Gibbs
H-index: 190 · Papers: 1.3K
A
Alisdair R. Fernie
H-index: 170 · Papers: 1.7K
G
Gregory J. Hannon
H-index: 168 · Papers: 495
View more