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S

Sebastian Bonhoeffer

eth zürich

87H-index
360Paper Count
3.1WCitation Count
Published Papers 150
Publication Date
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Modelling the role of the microbiome in antimicrobial resistance across scales
errNature Microbiology
IF19.4
err2026-06-22
err0
PREAI
errLisa Pagani; Ricardo León-Sampedro; Massimo Amicone; Burcu Tepekule; Christopher Witzany; Silvio D. Brugger; Marjon G. J. de Vos; Sara Mitri; Erik Bakkeren; Michael J. Bottery; Lulla Opatowski; Gabriel E. Leventhal; Karoline Faust; Lucas Böttcher; Sonja Lehtinen; Roger D. Kouyos; Sebastian Bonhoeffer
errShare
errSave
Viral Simulation Reveals Overestimation Bias in Within-Host Phylodynamic Migration Rate Estimates Under Selection
errMolecular Biology and Evolution
IF5.3
err2026-02-02
err0
errOAAI
errNicolas Ochsner; Judith Bouman; Timothy Vaughan; Tanja Stadler; Sebastian Bonhoeffer; Roland Regoes; null; null
errShare
errSave
orcAI: A Machine Learning Tool to Detect and Classify Acoustic Signals of Killer Whales in Audio Recordings
errMARINE MAMMAL SCIENCE
IF1.9
err2025-10-01
err0
errOAAI
errBonhoeffer, Sebastian; Selbmann, Anna; Angst, Daniel C.; Ochsner, Nicolas; Miller, Patrick J. O.; Samarra, Filipa I. P.; Baumgartner, Cherine D.
errShare
errSave
Kinship clustering within an ecologically diverse killer whale metapopulation
errHEREDITY
IF3.9
err2025-01-20
err0
errOAAI
errBaumgartner, Cherine D.; Jourdain, Eve; Bonhoeffer, Sebastian; Borga, Katrine; Heide-Jorgensen, Mads P.; Karoliussen, Richard; Laine, Jan T.; Rosing-Asvid, Aqqalu; Ruus, Anders; Tavares, Sara B.; Ugarte, Fernando; Samarra, Filipa I. P.; Foote, Andrew D.
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errSave
The effect of combining antibiotics on resistance: A systematic review and meta-analysis
errELIFE
IF0
err2024-12-20
err0
errOAAI
errSiedentop, Berit; Kachalov, Viacheslav N.; Witzany, Christopher; Egger, Matthias; Kouyos, Roger D.; Bonhoeffer, Sebastian
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errSave
The impact of treatment strategies on the epidemiological dynamics of plasmid-conferred antibiotic resistance
errPROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
IF9.1
err2024-12-17
err0
errOAAI
errMuetter, Malte; Angst, Daniel C.; Regoes, Roland R.; Bonhoeffer, Sebastian
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errSave
Assessing the Role of Bacterial Innate and Adaptive Immunity as Barriers to Conjugative Plasmids
errMOLECULAR BIOLOGY AND EVOLUTION
IF5.3
err2024-10-09
err0
errOAAI
errSiedentop, Berit; Mediavilla, Carlota Losa; Kouyos, Roger D.; Bonhoeffer, Sebastian; Chabas, Helene
errShare
errSave
The many dimensions of combination therapy: How to combine antibiotics to limit resistance evolution
errEVOLUTIONARY APPLICATIONS
IF3.2
err2024-08-02
err0
errOAAI
errNyhoegen, Christin; Bonhoeffer, Sebastian; Uecker, Hildegard
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errSave
Forecasting antimicrobial resistance evolution
errTRENDS IN MICROBIOLOGY
IF14.9
err2024-08-01
err8
PREAI
errRolff, Jens; Bonhoeffer, Sebastian; Kloft, Charlotte; Leistner, Rasmus; Regoes, Roland; Hochberg, Michael E.
errShare
errSave
My host's enemy is my enemy: plasmids carrying CRISPR-Cas as a defence against phages
errPROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
IF3.5
err2024-01-24
err3
errOAAI
errSiedentop, Berit; Rueegg, Dario; Bonhoeffer, Sebastian; Chabas, Helene
errShare
errSave
A Genome-Scale Metabolic Model of Marine Heterotroph Vibrio splendidus Strain 1A01
errMSYSTEMS
IF4.6
err2023-04-27
err3
errOAAI
errIffland-Stettner, Arion; Okano, Hiroyuki; Gralka, Matti; Guessous, Ghita; Amarnath, Kapil; Cordero, Otto X. X.; Hwa, Terence; Bonhoeffer, Sebastian
errShare
errSave
Ecological effects of stress drive bacterial evolvability under sub-inhibitory antibiotic treatments
errISME COMMUNICATIONS
IF6.1
err2022-09-02
err6
errOAAI
errVasse, Marie; Bonhoeffer, Sebastian; Frenoy, Antoine
errShare
errSave
The effect of sequencing and assembly on the inference of horizontal gene transfer on chromosomal and plasmid phylogenies
errPHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
IF4.7
err2022-08-22
err6
errOAAI
errHuisman, Jana S. S.; Vaughan, Timothy G. G.; Egli, Adrian; Tschudin-Sutter, Sarah; Stadler, Tanja; Bonhoeffer, Sebastian
errShare
errSave
Estimation and worldwide monitoring of the effective reproductive number of SARS-CoV-2
errELIFE
IF0
err2022-08-08
err37
errOAAI
errHuisman, Jana S.; Scire, Jeremie; Angst, Daniel C.; Li, Jinzhou; Neher, Richard A.; Maathuis, Marloes H.; Bonhoeffer, Sebastian; Stadler, Tanja; Davenport, Miles P.
errShare
errSave
Turnover in Life-Strategies Recapitulates Marine Microbial Succession Colonizing Model Particles
errFRONTIERS IN MICROBIOLOGY
IF4.5
err2022-06-23
err6
errOAAI
errPascual-Garcia, Alberto; Schwartzman, Julia; Enke, Tim N.; Iffland-Stettner, Arion; Cordero, Otto X.; Bonhoeffer, Sebastian
errShare
errSave
Applying mixture model methods to SARS-CoV-2 serosurvey data from Geneva
errEPIDEMICS
IF2.4
err2022-06-01
err3
errOAAI
errBouman, Judith A.; Kadelka, Sarah; Stringhini, Silvia; Pennacchio, Francesco; Meyer, Benjamin; Yerly, Sabine; Kaiser, Laurent; Guessous, Idris; Azman, Andrew S.; Bonhoeffer, Sebastian; Regoes, Roland R.
errShare
errSave
Constrained optimization of divisional load in hierarchically organized tissues during homeostasis
errJOURNAL OF THE ROYAL SOCIETY INTERFACE
IF3.5
err2022-02-23
err0
errOAAI
errAshcroft, Peter; Bonhoeffer, Sebastian
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errSave
Increase in antimicrobial resistance in Escherichia coli in food animals between 1980 and 2018 assessed using genomes from public databases
errJOURNAL OF ANTIMICROBIAL CHEMOTHERAPY
IF3.6
err2021-12-11
err14
PREAI
errPires, Joao; Huisman, Jana S.; Bonhoeffer, Sebastian; Van Boeckel, Thomas P.
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errSave
Pathogen invasion-dependent tissue reservoirs and plasmid-encoded antibiotic degradation boost plasmid spread in the gut
errELIFE
IF0
err2021-12-07
err13
PREAI
errBakkeren, Erik; Herter, Joana Anuschka; Huisman, Jana Sanne; Steiger, Yves; Gul, Ersin; Newson, Joshua Patrick Mark; Brachmann, Alexander Oliver; Piel, Jorn; Regoes, Roland; Bonhoeffer, Sebastian; Diard, Mederic; Hardt, Wolf-Dietrich
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errSave
The search for universality in evolutionary landscapes Comment on From genotypes to organisms: State-of-the-art and perspectives of a cornerstone in evolutionary dynamics by Susanna Manrubia, Jose A. Cuesta, et al.
errPHYSICS OF LIFE REVIEWS
IF14.3
err2021-12-01
err1
errOAAI
errManhart, Michael; Bonhoeffer, Sebastian
errShare
errSave

Research Directions

No research directions
Co-authors
Cooperation Journals
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