Robi D. Mitra - Publications, H-index & Citations

Robi D. Mitra

washington university in st. louis school of medicine

42H指数

172论文数

9.0K被引数

收录论文 73

发表时间

SMURF: soft-segmentation for single-cell reconstruction and topological analysis of spatial transcriptomic data SMURF: 用于单细胞重建和空间转录组数据的拓扑分析的软分割

Nature Communications

IF15.7

2026-06-26

OAAI

Juanru Guo; Simona Sarafinovska; Ryan A. Hagenson; Mark C. Valentine; David Y. Chen; William H. McCoy IV; Joseph D. Dougherty; Robi D. Mitra; Brian D. Muegge

NF-κB and STAT3 signaling uniquely stratifies survival in female glioblastoma patients

iScience

IF4.1

2026-01-21

OAAI

Jason P. Wong; Lorida Llaci; Lloyd Tripp; Myung Sik Jeon; Lihua Yang; Nicholas Reinhold; Nicole M. Warrington; Jingqin Luo; Robi D. Mitra; Joshua B. Rubin

Antecedent enhancer activity predicts future susceptibility to seizures in mice 前增强子活性预测小鼠未来癫痫易感性

Nature Communications

IF15.7

2026-01-08

OAAI

Benjamin D. Boros; Mariam A. Gachechiladze; Juanru Guo; Dylan A. Galloway; Shayna M. Mueller; Mark Shabsovich; Allen Yen; Xuhua Chen; Alexander J. Cammack; Tao Shen; Robi D. Mitra; Joseph D. Dougherty; Timothy M. Miller

Biophysical simulation enables segmentation and nervous system atlas mapping for image first spatial omics 生物物理模拟实现了图像先验空间组学的分割和神经系统图谱绘制。

npj Systems Biology and Applications

IF3.5

2025-12-14

OAAI

Lina Mohammed Ali; Aldrin Kay Yuen Yim; Emanuel Gerbi; Thien Nguyen; Nicholas Tu; Faith Ikede; Remi Sampaleanu; Diana Grigore; Jason Waligorski; Colin Kremitzki; Liya Yuan; Wendy Dong; Robi Mitra; Jeffrey Milbrandt; William Buchser

MYT1L deficiency impairs excitatory neuron trajectory during cortical development

NATURE COMMUNICATIONS

IF15.7

2024-11-27

OAAI

Yen, Allen; Sarafinovska, Simona; Chen, Xuhua; Skinner, Dominic D.; Leti, Fatjon; Crosby, Marialynn; Hoisington-Lopez, Jessica; Wu, Yizhe; Chen, Jiayang; Li, Zipeng A.; Noguchi, Kevin K.; Mitra, Robi D.; Dougherty, Joseph D.

Epigenetic regulation of hybrid epithelial-mesenchymal cell states in cancer

ONCOGENE

IF7.3

2023-06-21

PREAI

Sample, Reilly A.; Nogueira, Marina F.; Mitra, Robi D.; Puram, Sidharth V.

Zinc cluster transcription factors frequently activate target genes using a non-canonical half-site binding mode

NUCLEIC ACIDS RESEARCH

IF13.1

2023-05-01

OAAI

Recio, Pamela S.; Mitra, Nikhil J.; Shively, Christian A.; Song, David; Jaramillo, Grace; Lewis, Kristine Shady; Chen, Xuhua; Mitra, Robi D.

A Suite of New Strain Construction Vectors for Gene Expression Knockdown in Budding Yeast

ACS SYNTHETIC BIOLOGY

IF3.9

2023-01-17

OAAI

Shively, Christian A.; Dong, Fengping; Mitra, Robi D.

Pooled image-base screening of mitochondria with microraft isolation distinguishes pathogenic mitofusin 2 mutations

COMMUNICATIONS BIOLOGY

IF5.1

2022-10-25

OAAI

Yenkin, Alex L.; Bramley, John C.; Kremitzki, Colin L.; Waligorski, Jason E.; Liebeskind, Mariel J.; Xu, Xinyuan E.; Chandrasekaran, Vinay D.; Vakaki, Maria A.; Bachman, Graham W.; Mitra, Robi D.; Milbrandt, Jeffrey D.; Buchser, William J.

Measuring transcription factor binding and gene expression using barcoded self-reporting transposon calling cards and transcriptomes

genomics proteomics bioinformatics

IF2.8

2022-08-31

OAAI

Lalli, Matthew; Yen, Allen; Thopte, Urvashi; Dong, Fengping; Moudgil, Arnav; Chen, Xuhua; Milbrandt, Jeffrey; Dougherty, Joseph D.; Mitra, Robi D.

From karyotypes to precision genomics in 9p deletion and duplication syndromes

HUMAN GENETICS AND GENOMICS ADVANCES

IF3.6

2022-01-01

OAAI

Sams, Eleanor, I; Ng, Jeffrey K.; Tate, Victoria; Hou, Ying-Chen Claire; Cao, Yang; Antonacci-Fulton, Lucinda; Belhassan, Khadija; Neidich, Julie; Mitra, Robi D.; Cole, F. Sessions; Dickson, Patricia; Milbrandt, Jeffrey; Turner, Tychele N.

Brd4-bound enhancers drive cell-intrinsic sex differences in glioblastoma

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

IF9.1

2021-04-13

OAAI

Kfoury, Najla; Qi, Zongtai; Prager, Briana C.; Wilkinson, Michael N.; Broestl, Lauren; Berrett, Kristopher C.; Moudgil, Arnav; Sankararaman, Sumithra; Chen, Xuhua; Gertz, Jason; Rich, Jeremy N.; Mitra, Robi D.; Rubin, Joshua B.

High-resolution HLA typing by long reads from the R10.3 Oxford nanopore flow cells

HUMAN IMMUNOLOGY

IF2.2

2021-04-01

PREAI

Liu, Chang; Yang, Xiao; Duffy, Brian F.; Hoisington-Lopez, Jessica; Crosby, MariaLynn; Porche-Sorbet, Rhonda; Saito, Katsuyuki; Berry, Rick; Swamidass, Victoria; Mitra, Robi D.

Rapid and Extraction-Free Detection of SARS-CoV-2 from Saliva by Colorimetric Reverse-Transcription Loop-Mediated Isothermal Amplification

CLINICAL CHEMISTRY

IF6.3

2020-10-24

155

OAAI

Lalli, Matthew A.; Langmade, S. Joshua; Chen, Xuhua; Fronick, Catrina C.; Sawyer, Christopher S.; Burcea, Lauren C.; Wilkinson, Michael N.; Fulton, Robert S.; Heinz, Michael; Buchser, William J.; Head, Richard D.; Mitra, Robi D.; Milbrandt, Jeffrey

High-throughput single-cell functional elucidation of neurodevelopmental disease-associated genes reveals convergent mechanisms altering neuronal differentiation

GENOME RESEARCH

IF5.5

2020-09-04

OAAI

Lalli, Matthew A.; Avey, Denis; Dougherty, Joseph D.; Milbrandt, Jeffrey; Mitra, Robi D.

Brd4-bound enhancers drive critical sex differences in glioblastoma

CANCER RESEARCH

IF16.6

2020-08-15

PREAI

Kfoury-Beaumont, Najla; Qi, Zongtai; Wilkinson, Michael; Broestl, Lauren; Berrett, Kristopher; Moudgil, Arnav; Sankararaman, Sumithra; Chen, Xuhua; Gertz, Jay; Mitra, Robi; Rubin, Joshua B.

Human L1 Transposition Dynamics Unraveled with Functional Data Analysis 用功能数据分析揭示人类L1转座动力学

MOLECULAR BIOLOGY AND EVOLUTION

IF5.3

2020-07-28

OAAI

Chen, Di; Cremona, Marzia A.; Qi, Zongtai; Mitra, Robi D.; Chiaromonte, Francesca; Makova, Kateryna D.

A viral toolkit for recording transcription factor-DNA interactions in live mouse tissues 用于记录活小鼠组织中转录因子-DNA相互作用的病毒工具包

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

IF9.1

2020-04-16

OAAI

Cammack, Alexander J.; Moudgil, Arnav; Chen, Jiayang; Vasek, Michael J.; Shabsovich, Mark; McCullough, Katherine; Yen, Allen; Lagunas, Tomas; Maloney, Susan E.; He, June; Chen, Xuhua; Hooda, Misha; Wilkinson, Michael N.; Miller, Timothy M.; Mitra, Robi D.; Dougherty, Joseph D.

Quantitative analysis of transcription factor binding and expression using calling cards reporter arrays

NUCLEIC ACIDS RESEARCH

IF13.1

2020-03-05

OAAI

Liu, Jiayue; Shively, Christian A.; Mitra, Robi D.

Dual threshold optimization and network inference reveal convergent evidence from TF binding locations and TF perturbation responses

GENOME RESEARCH

IF5.5

2020-02-14

OAAI

Kang, Yiming; Patel, Nikhil R.; Shively, Christian; Recio, Pamela Samantha; Chen, Xuhua; Wranik, Bernd J.; Kim, Griffin; McIsaac, R. Scott; Mitra, Robi; Brent, Michael R.

研究方向