Mark T. Holder - Publications, H-index & Citations

Mark T. Holder

University of Kansas

30H指数

82论文数

6.8K被引数

收录论文 25

发表时间

A complete and dynamic tree of birds 完整的鸟类动态树

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

IF9.1

2025-04-29

OAAI

McTavish, Emily Jane; Gerbracht, Jeff A.; Holder, Mark T.; Iliff, MarshallJ.; Lepage, Denis; Rasmussen, Pamela C.; Redelings, Benjamin D.; Reyes, Luna L. Sanchez; Miller, Eliot T.

Incorporating the speciation process into species delimitation

plos biology

IF3.6

2021-05-13

OAAI

Sukumaran, Jeet; Holder, Mark T.; Knowles, L. Lacey

OpenTree: A Python Package for Accessing and Analyzing Data from the Open Tree of Life OpenTree: 一个Python包，用于访问和分析来自开放生命之树的数据

SYSTEMATIC BIOLOGY

IF5.7

2021-05-10

OAAI

Mctavish, Emily Jane; Sanchez-Reyes, Luna Luisa; Holder, Mark T.

Twisted trees and inconsistency of tree estimation when gaps are treated as missing data - The impact of model mis-specification in distance corrections 当间隙被视为缺失数据时，扭曲的树和树估计的不一致性-距离校正中模型错误规范的影响

MOLECULAR PHYLOGENETICS AND EVOLUTION

IF3.6

2015-12-01

OAAI

McTavish, Emily Jane; Steel, Mike; Holder, Mark T.

Phycas: Software for Bayesian Phylogenetic Analysis Phycas: 贝叶斯系统发育分析软件

SYSTEMATIC BIOLOGY

IF5.7

2015-01-09

OAAI

Lewis, Paul O.; Holder, Mark T.; Swofford, David L.

EVIDENCE FOR CLIMATE-DRIVEN DIVERSIFICATION? A CAUTION FOR INTERPRETING ABC INFERENCES OF SIMULTANEOUS HISTORICAL EVENTS

EVOLUTION

IF2.6

2012-12-11

OAAI

Oaks, Jamie R.; Sukumaran, Jeet; Esselstyn, Jacob A.; Linkem, Charles W.; Siler, Cameron D.; Holder, Mark T.; Brown, Rafe M.

NeXML: Rich, Extensible, and Verifiable Representation of Comparative Data and Metadata

SYSTEMATIC BIOLOGY

IF5.7

2012-02-22

OAAI

Vos, Rutger A.; Balhoff, James P.; Caravas, Jason A.; Holder, Mark T.; Lapp, Hilmar; Maddison, Wayne P.; Midford, Peter E.; Priyam, Anurag; Sukumaran, Jeet; Xia, Xuhua; Stoltzfus, Arlin

SATe-II: Very Fast and Accurate Simultaneous Estimation of Multiple Sequence Alignments and Phylogenetic Trees

SYSTEMATIC BIOLOGY

IF5.7

2011-12-01

318

OAAI

Liu, Kevin; Warnow, Tandy J.; Holder, Mark T.; Nelesen, Serita M.; Yu, Jiaye; Stamatakis, Alexandros P.; Linder, C. Randal

A Dirichlet Process Prior for Estimating Lineage-Specific Substitution Rates 用于估计特定于谱系的替代率的Dirichlet过程

MOLECULAR BIOLOGY AND EVOLUTION

IF5.3

2011-11-02

OAAI

Heath, Tracy A.; Holder, Mark T.; Huelsenbeck, John P.

BEAGLE: An Application Programming Interface and High-Performance Computing Library for Statistical Phylogenetics BEAGLE: 用于统计系统发育的应用程序编程接口和高性能计算库

SYSTEMATIC BIOLOGY

IF5.7

2011-10-01

1.0W

OAAI

Ayres, Daniel L.; Darling, Aaron; Zwickl, Derrick J.; Beerli, Peter; Holder, Mark T.; Lewis, Paul O.; Huelsenbeck, John P.; Ronquist, Fredrik; Swofford, David L.; Cummings, Michael P.; Rambaut, Andrew; Suchard, Marc A.

Protistan microbial observatory in the Cariaco Basin, Caribbean. I. Pyrosequencing vs Sanger insights into species richness

ISME JOURNAL

IF10

2011-03-10

201

OAAI

Edgcomb, Virginia; Orsi, William; Bunge, John; Jeon, Sunok; Christen, Richard; Leslin, Chesley; Holder, Mark; Taylor, Gordon T.; Suarez, Paula; Varela, Ramon; Epstein, Slava

What's in a Likelihood? Simple Models of Protein Evolution and the Contribution of Structurally Viable Reconstructions to the Likelihood

SYSTEMATIC BIOLOGY

IF5.7

2011-01-12

OAAI

Lakner, Clemens; Holder, Mark T.; Goldman, Nick; Naylor, Gavin J. P.

Ginkgo: spatially-explicit simulator of complex phylogeographic histories

MOLECULAR ECOLOGY RESOURCES

IF5.5

2010-11-10

PREAI

Sukumaran, Jeet; Holder, Mark T.