Diane Joseph‐McCarthy - Publications, H-index & Citations

Diane Joseph‐McCarthy

boston university

38H指数

113论文数

1.9W被引数

收录论文 49

发表时间

Assessment of Alphafold Protein Models for Small-Molecule Ligand Docking versus Co-Folding 评估AlphaFold蛋白模型在配体对接与小分子共折叠中的应用

Journal of Chemical Information and Modeling

IF5.3

2026-05-11

PREAI

Hlib Maidanik; Maria Lazou; Rohin Bajaj; Raheel Sarwar; Omid Ziaee; Sandor Vajda; Diane Joseph-McCarthy

Towards Understanding the Drivers of Antibody-Antigen Binding 理解抗体-抗原结合的驱动因素

Biophysical Journal

IF3.1

2026-02-12

PREAI

Omeir Khan; Marcus Kankkunen; Michel Shaker; Henry Chow; Nikolas Moustakas; Siri Allegra-Berger; Maria Lazou; Sandor Vajda; Diane Joseph-McCarthy

Investigation of Peptide Binding to Fibrin for the Design of Targeted Molecular Imaging Agents

LANGMUIR

IF3.9

2025-12-01

PREAI

Ostrovsky, Nicole; Ragatz, Alisha; Wong, Joyce Y.; Joseph-McCarthy, Diane

Modeling Protein–Protein and Protein–Ligand Interactions by the ClusPro Team in CASP16 在CASP16中，ClusPro团队对蛋白质-蛋白质和蛋白质-配体相互作用进行建模

Proteins: Structure, Function, and Bioinformatics

IF0

2025-10-20

OAAI

Ryota Ashizawa; Sergei Kotelnikov; Omeir Khan; Stan Xiaogang Li; Ernest Glukhov; Xin Cao; Maria Lazou; Ayse Bekar-Cesaretli; Derara Hailegeorgis; Veranika Averkava; Yimin Zhu; George Jones; Hao Yu; Dmytro Kalitin; Darya Stepanenko; Kushal Koirala; Taras Patsahan; Dmitri Beglov; Mark Lukin; Diane Joseph-McCarthy; Carlos Simmerling; Alexander Tropsha; Evangelos Coutsias; Ken A. Dill; Dzmitry Padhorny; Sandor Vajda; Dima Kozakov

Improving B-cell epitope prediction 改进B细胞表位预测

Drug Discovery Today

IF7.5

2025-10-01

PREAI

Hao Yu; Diane Joseph-McCarthy; Sandor Vajda

Predicting multiple conformations of ligand binding sites in proteins suggests that AlphaFold2 may remember too much 预测蛋白质中配体结合位点的多个构象表明AlphaFold2可能会记住太多

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

IF9.1

2024-11-20

PREAI

Lazou, Maria; Khan, Omeir; Nguyen, Thu; Padhorny, Dzmitry; Kozakov, Dima; Mccarthy, Diane Joseph -; Vajda, Sandor

Which cryptic sites are feasible drug targets?

DRUG DISCOVERY TODAY

IF7.5

2024-11-01

PREAI

Lazou, Maria; Kozakov, Dima; Joseph-McCarthy, Diane; Vajda, Sandor

Identification and Ranking of Binding Sites from Structural Ensembles: Application to SARS-CoV-2

VIRUSES-BASEL

IF3.5

2024-10-22

OAAI

Lazou, Maria; Bekar-Cesaretli, Ayse A.; Vajda, Sandor; Joseph-McCarthy, Diane

Automating biomedical literature review for rapid drug discovery: Leveraging GPT-4 to expedite pandemic response 自动化生物医学文献综述以快速发现药物: 利用GPT-4加快大流行应对

INTERNATIONAL JOURNAL OF MEDICAL INFORMATICS

IF4.1

2024-09-01

PREAI

Yang, Jingmei; Walker, Kenji C.; Bekar-Cesaretli, Ayse A.; Hao, Boran; Bhadelia, Nahid; Joseph-McCarthy, Diane; Paschalidis, Ioannis Ch.

Expanding FTMap for Fragment-Based Identification of Pharmacophore Regions in Ligand Binding Sites

JOURNAL OF CHEMICAL INFORMATION AND MODELING

IF5.3

2024-03-08

OAAI

Khan, Omeir; Jones, George; Lazou, Maria; Joseph-McCarthy, Diane; Kozakov, Dima; Beglov, Dmitri; Vajda, Sandor

Identification of a druggable site on GRP78 at the GRP78-SARS-CoV-2 interface and virtual screening of compounds to disrupt that interface 在GRP78-SARS-CoV-2界面上鉴定GRP78上的可药物位点，并对破坏该界面的化合物进行虚拟筛选

JOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN

IF3.1

2024-01-24

PREAI

Lazou, Maria; Hutton, Jonathan R.; Chakravarty, Arijit; Joseph-McCarthy, Diane

Conservation of Hot Spots and Ligand Binding Sites in Protein Models by AlphaFold2

JOURNAL OF CHEMICAL INFORMATION AND MODELING

IF5.3

2024-01-22

OAAI

Bekar-Cesaretli, Ayse A.; Khan, Omeir; Nguyen, Thu; Kozakov, Dima; Joseph-Mccarthy, Diane; Vajda, Sandor

Vaccines Alone Cannot Slow the Evolution of SARS-CoV-2

VACCINES

IF3.4

2023-04-16

OAAI

Van Egeren, Debra; Stoddard, Madison; White, Laura F.; Hochberg, Natasha S.; Rogers, Michael S.; Zetter, Bruce; Joseph-McCarthy, Diane; Chakravarty, Arijit

No magic bullet: Limiting in-school transmission in the face of variable SARS-CoV-2 viral loads

FRONTIERS IN PUBLIC HEALTH

IF3.4

2022-12-01

OAAI

Van Egeren, Debra; Stoddard, Madison; Malakar, Abir; Ghosh, Debayan; Acharya, Antu; Mainuddin, Sk; Majumdar, Biswajit; Luo, Deborah; Nolan, Ryan P.; Joseph-McCarthy, Diane; White, Laura F.; Hochberg, Natasha S.; Basu, Saikat; Chakravarty, Arijit

Controlling long-term SARS-CoV-2 infections can slow viral evolution and reduce the risk of treatment failure

SCIENTIFIC REPORTS

IF3.9

2021-11-19

OAAI

Van Egeren, Debra; Novokhodko, Alexander; Stoddard, Madison; Tran, Uyen; Zetter, Bruce; Rogers, Michael S.; Joseph-McCarthy, Diane; Chakravarty, Arijit

Japan-United States of America Harmonized Assessment by Randomized Multicentre Study of OrbusNEich's Combo StEnt (Japan-USA HARMONEE) study: primary results of the pivotal registration study of combined endothelial progenitor cell capture and drug-eluting stent in patients with ischaemic coronary disease and non-ST-elevation acute coronary syndrome

EUROPEAN HEART JOURNAL

IF35.6

2018-06-21

OAAI

Saito, Shigeru; Krucoff, Mitchell W.; Nakamura, Shigeru; Mehran, Roxana; Maehara, Akiko; Al-Khalidi, Hussein R.; Rowland, Stephen M.; Tasissa, Gudaye; Morrell, Debbie; Joseph, Diane; Okaniwa, Yumiko; Shibata, Yoshisato; Bertolet, Barry D.; Rothenberg, Mark D.; Genereux, Philippe; Bezerra, Hiram; Kong, David F.

An Antipersister Strategy for Treatment of Chronic Pseudomonas aeruginosa Infections 治疗慢性铜绿假单胞菌感染的抗持久性策略

ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

IF4.5

2017-12-01

OAAI

Koeva, Martina; Gutu, Alina D.; Hebert, Wesley; Wager, Jeffrey D.; Yonker, Lael M.; O'Toole, George A.; Ausubel, Frederick M.; Moskowitz, Samuel M.; Joseph-McCarthy, Diane

Evaluating Free Energies of Binding and Conservation of Crystallographic Waters Using SZMAP

JOURNAL OF CHEMICAL INFORMATION AND MODELING

IF5.3

2015-08-03

PREAI

Bayden, Alexander S.; Moustakas, Demetri T.; Joseph-McCarthy, Diane; Lamb, Michelle L.

Ensemble-Based Docking Using Biased Molecular Dynamics

JOURNAL OF CHEMICAL INFORMATION AND MODELING

IF5.3

2014-06-18

PREAI

Campbell, Arthur J.; Lamb, Michelle L.; Joseph-McCarthy, Diane