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R

Rafael C. Bernardi

Auburn University

25H指数
97论文数
6.7K被引数
收录论文 43
发表时间
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The urinary pathobiont Actinobaculum massiliense can generate androgens via the dirAB pathway尿路致病共生菌Actinobaculum massiliense可通过dirAB通路生成雄激素
errNature Communications
IF15.7
err2026-09-03
err0
errOAAI
errTaojun Wang; Saeed Ahmad; Raissa Santos de Lima Rosa; Briawna Binion; Francelys V. Fernandez-Materan; Jimoh Olamilekan Igbalaye; David Chung; Anika Bushra; Vince Perez; Michael A. Biedak; Elizabeth Tang; Betsy Barnick; Damie Olukoya; Pauline Mbuvi; Debapriya Dutta; John W. Erdman; H. Rex Gaskins; Glen Yang; Joseph Irudayaraj; Rafael C. Bernardi; Jason M. Ridlon
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Mapping of dynamic allostery within p38 alpha kinase via network analyses and NMR spectroscopy通过网络分析和核磁共振波谱学研究p38 alpha激酶内的动态别构效应
errNature Communications
IF15.7
err2026-08-22
err0
errOAAI
errSuchandra Roy Acharyya; Jörn Weisner; Rafael C. Bernardi; Rasmus Linser
err分享
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Impact of Structural Relaxation on Protein-Protein Docking in Large Macromolecular Complexes
errApplied Biosciences
IF0
err2025-10-23
err0
errOAAI
errRosa, Raissa Santos De Lima; Bulla, Ana Carolina Silva; Bernardi, Rafael C.; Da Silva, Manuela Leal
err分享
err收藏
AI Uncovers the Rapid Activation of Catch-Bonds under ForceAI揭示力作用下捕获键的快速激活
errJOURNAL OF CHEMICAL THEORY AND COMPUTATION
IF5.5
err2025-09-01
err1
PREAI
errMelo, Marcelo C. R.; Bernardi, Rafael C.
err分享
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An expanded metabolic pathway for androgen production by commensal bacteria共生细菌产生雄激素的扩展代谢途径
errNATURE MICROBIOLOGY
IF19.4
err2025-04-21
err2
PREAI
errWang, Taojun; Ahmad, Saeed; Cruz-Lebron, Angelica; Ernst, Sarah E.; Olivos Caicedo, Kelly Yovani; Jeong, Yoon; Binion, Briawna; Mbuvi, Pauline; Dutta, Debapriya; Fernandez-Materan, Francelys V.; Breister, Adam M.; Tang, Elizabeth; Lee, Jae Won; Kang, Jason D.; Harris, Spencer C.; Ikegawa, Shigeo; Gaskins, H. Rex; Erdman Jr, John W.; Yang, Glen; Cann, Isaac; Daniel, Steven L.; Hylemon, Phillip B.; Anantharaman, Karthik; Bernardi, Rafael C.; Alves, Joao M. P.; Sfanos, Karen S.
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Atomistic Insights into gp82 Binding: A Microsecond, Million-Atom Exploration of Trypanosoma cruzi Host-Cell Invasion原子级洞察gp82结合：一项微秒级、百万原子尺度的克氏锥虫宿主细胞侵袭探索
errBIOCHEMISTRY
IF3
err2025-03-28
err0
PREAI
errRosa, Raissa S. L.; da Silva, Manuela Leal; Bernardi, Rafael C.
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err收藏
Engineering the Mechanical Stability of a Therapeutic Complex between Affibody and Programmed Death-Ligand 1 by Anchor Point Selection
errACS NANO
IF16
err2024-11-08
err0
PREAI
errYang, Byeongseon; Gomes, Diego E. B.; Liu, Zhaowei; Santos, Mariana Sa; Li, Jiajun; Bernardi, Rafael C.; Nash, Michael A.
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Integrating Dynamic Network Analysis with AI for Enhanced Epitope Prediction in PD-L1:Affibody Interactions
errJOURNAL OF THE AMERICAN CHEMICAL SOCIETY
IF15.6
err2024-08-15
err2
errOAAI
errGomes, Diego E. B.; Yang, Byeongseon; Vanella, Rosario; Nash, Michael A.; Bernardi, Rafael C.
err分享
err收藏
Single-molecule force stability of the SARS-CoV-2-ACE2 interface in variants-of-concern受关注变体中SARS-CoV-2-ACE2界面的单分子力稳定性
errNATURE NANOTECHNOLOGY
IF34.9
err2023-11-27
err5
errOAAI
errBauer, Magnus S.; Gruber, Sophia; Hausch, Adina; Melo, Marcelo C. R.; Gomes, Priscila S. F. C.; Nicolaus, Thomas; Milles, Lukas F.; Gaub, Hermann E.; Bernardi, Rafael C.; Lipfert, Jan
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VMD as a Platform for Interactive Small Molecule Preparation and Visualization in Quantum and Classical Simulations
errJOURNAL OF CHEMICAL INFORMATION AND MODELING
IF5.3
err2023-07-28
err28
PREAI
errSpivak, Mariano; Stone, John E.; Ribeiro, Joao; Saam, Jan; Freddolino, Peter L.; Bernardi, Rafael C.; Tajkhorshid, Emad
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Fostering discoveries in the era of exascale computing: How the next generation of supercomputers empowers computational and experimental biophysics alike
errBIOPHYSICAL JOURNAL
IF3.1
err2023-07-01
err7
errOAAI
errMelo, Marcelo C. R.; Bernardi, Rafael C.
err分享
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Deciphering molecular mechanisms stabilizing the reovirus-binding complex
errPROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
IF9.1
err2023-05-15
err5
errOAAI
errNatividade, Rita dos Santos; Koehler, Melanie; Gomes, Priscila S. F. C.; Simpson, Joshua D.; Smith, Sydni Caet; Gomes, Diego E. B.; de Lhoneux, Juliette; Yang, Jinsung; Ray, Ankita; Dermody, Terence S.; Bernardi, Rafael C.; Ogden, Kristen M.; Alsteens, David
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err收藏
May the force be with you: The role of hyper-mechanostability of the bone sialoprotein binding protein during early stages of Staphylococci infections
errFRONTIERS IN CHEMISTRY
IF4.2
err2023-02-08
err5
errOAAI
errGomes, Priscila S. F. C.; Forrester, Meredith; Pace, Margaret; Gomes, Diego E. B.; Bernardi, Rafael C.
err分享
err收藏
Molecular Origins of Force-Dependent Protein Complex Stabilization during Bacterial Infections
errJOURNAL OF THE AMERICAN CHEMICAL SOCIETY
IF15.6
err2022-12-01
err11
PREAI
errMelo, Marcelo C. R.; Gomes, Diego E. B.; Bernardi, Rafael C.
err分享
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A tethered ligand assay to probe SARS-CoV-2:ACE2 interactions
errPROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
IF9.1
err2022-03-21
err34
errOAAI
errBauer, Magnus S.; Gruber, Sophia; Hausch, Adina; Gomes, Priscila S. F. C.; Milles, Lukas F.; Nicolaus, Thomas; Schendel, Leonard C.; Navajasg, Pilar Lopez; Procko, Erik; Lietha, Daniel; Melo, Marcelo C. R.; Bernardi, Rafael C.; Gaub, Hermann E.; Lipfert, Jan
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Generalized correlation-based dynamical network analysis: a new high-performance approach for identifying allosteric communications in molecular dynamics trajectories
errJOURNAL OF CHEMICAL PHYSICS
IF3.1
err2020-10-01
err95
errOAAI
errMelo, Marcelo C. R.; Bernardi, Rafael C.; de la Fuente-Nunez, Cesar; Luthey-Schulten, Zaida
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High force catch bond mechanism of bacterial adhesion in the human gut
errNATURE COMMUNICATIONS
IF15.7
err2020-08-28
err45
errOAAI
errLiu, Zhaowei; Liu, Haipei; Vera, Andres M.; Bernardi, Rafael C.; Tinnefeld, Philip; Nash, Michael A.
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Scalable molecular dynamics on CPU and GPU architectures with NAMD使用NAMD在CPU和GPU架构上实现可扩展的分子动力学
errJOURNAL OF CHEMICAL PHYSICS
IF3.1
err2020-07-30
err1.9K
errOAAI
errPhillips, James C.; Hardy, David J.; Maia, Julio D. C.; Stone, John E.; Ribeiro, Joao, V; Bernardi, Rafael C.; Buch, Ronak; Fiorin, Giacomo; Henin, Jerome; Jiang, Wei; McGreevy, Ryan; Melo, Marcelo C. R.; Radak, Brian K.; Skeel, Robert D.; Singharoy, Abhishek; Wang, Yi; Roux, Benoit; Aksimentiev, Aleksei; Luthey-Schulten, Zaida; Kale, Laxmikant, V; Schulten, Klaus; Chipot, Christophe; Tajkhorshid, Emad
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Streptavidin/biotin: Tethering geometry defines unbinding mechanics
errSCIENCE ADVANCES
IF12.5
err2020-03-27
err65
errOAAI
errSedlak, Steffen M.; Schendel, Leonard C.; Gaub, Hermann E.; Bernardi, Rafael C.
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Thermophilic Degradation of Hemicellulose, a Critical Feedstock in the Production of Bioenergy and Other Value-Added Products
errAPPLIED AND ENVIRONMENTAL MICROBIOLOGY
IF3.7
err2020-03-18
err15
errOAAI
errCann, Isaac; Pereira, Gabriel, V; Abdel-Hamid, Ahmed M.; Kim, Heejin; Wefers, Daniel; Kayang, Boniface B.; Kanai, Tamotsu; Sato, Takaaki; Bernardi, Rafael C.; Atomi, Haruyuki; Mackie, Roderick, I
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研究方向

暂时未获取到该数据
合作学者
合作期刊
K
Klaus Schulten
H 指数: 145 · 论文数: 718
F
Frank Neese
H 指数: 141 · 论文数: 979
B
Benoı̂t Roux
H 指数: 128 · 论文数: 723
刘
刘波 (Bo Liu)
H 指数: 104 · 论文数: 4.5K
E
Edward A. Bayer
H 指数: 94 · 论文数: 607
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