Yingxin Lin - Publications, H-index & Citations

Yingxin Lin

yale university

22H指数

101论文数

2.5K被引数

收录论文 34

发表时间

Lineage and organ signals sequentially build organ intrinsic nervous systems 谱系和器官信号依次构建器官固有神经系统

Nature

IF48.5

2026-05-01

PREAI

Hsu, I-Uen Yvonne; Zhao, Jia; Lin, Yingxin; Guo, Yunshan; Xu, Qian J.; Shao, Yuancheng; Wang, Ruiqi L.; Yin, Dominic; Ghoshal, Kakali; Mourad, Rida; Pozzi, Ambra; Halabi, Carmen M.; Young, Lawrence H.; Zhao, Hongyu; Zhang, Le; Chang, Rui B.

Leveraging cell-type specificity and similarity improves single-cell eQTL fine-mapping 利用细胞类型特异性和相似性改进单细胞eQTL精确定位

Nature Communications

IF15.7

2026-04-22

OAAI

Chen Lin; Yingxin Lin; Wenxuan Li; Leqi Xu; Xiangyu Zhang; Hongyu Zhao

Interpretable, flexible and spatially aware integration of multiple spatial transcriptomics datasets from diverse sources 可解释的、灵活的且具有空间感知能力的多源空间转录组学数据集集成

Nature Genetics

IF29

2026-04-01

PREAI

Zhao, Jia; Zhang, Xiangyu; Wang, Gefei; Lin, Yingxin; Liu, Tianyu; Chang, Rui B.; Zhao, Hongyu

Central amygdala single-nucleus atlas reveals chromatin and gene transcription dynamics in human alcohol use disorder 中央杏仁核单核图谱揭示了人类酒精使用障碍中的染色质和基因转录动力学

Nature Communications

IF15.7

2026-01-19

OAAI

Che Yu Lee; Ahyeon Hwang; Delaney McRiley; Jaywon Lee; Genevieve Thibodeau; Catharine Duman; Xiangyu Zhang; Mario Skarica; Jensine Coudriet; Siwei Xu; Rosemarie Terwilliger; Alexa-Nicole Sliby; Jiawei Wang; Tuan Nguyen; Yujing Liu; Hongyu Li; Yi Dai; Ziheng Duan; Yutong Lei; Yingxin Lin; Jill R. Glausier; David A. Lewis; Joel Gelernter; Paul E. Holtzheimer; Ke Xu; Hang Zhou; Hongyu Zhao; Summer Thompson; John H. Krystal; Alicia Che; Jane R. Taylor; Jing Zhang; Matthew J. Girgenti

Chromosome-level genome assembly and annotation of the tropical sea cucumber Bohadschia ocellate 染色体水平基因组组装及注释：热带海参Bohadschia ocellate

Scientific Data

IF6.9

2025-12-17

OAAI

Qianying Huang; Xuan Wang; Zhou Qin; Dingding Fan; Hua Ge; Yingxin Lin; Junyan Wang; Yun Yang; Zhenyu Xie; Da Huo; Chang Chen; Haipeng Qin; Xiaoli Zhang; Xiangxing Zhu; Dongsheng Tang; Chunhua Ren; Chaoqun Hu; Ting Chen; Aifen Yan

Improving polygenic risk prediction performance by integrating electronic health records through phenotype embedding 通过表型嵌入整合电子健康记录以改进多基因风险预测性能

The American Journal of Human Genetics

IF0

2025-12-04

PREAI

Leqi Xu; Wangjie Zheng; Jiaqi Hu; Yingxin Lin; Jia Zhao; Gefei Wang; Tianyu Liu; Hongyu Zhao

Spatial dynamics of brain development and neuroinflammation 脑发育和神经炎症的空间动态

Nature

IF48.5

2025-11-05

OAAI

Di Zhang; Leslie A. Rubio Rodríguez-Kirby; Yingxin Lin; Wenqi Wang; Mengyi Song; Li Wang; Lijun Wang; Shigeaki Kanatani; Tony Jimenez-Beristain; Yonglong Dang; Mei Zhong; Petra Kukanja; Shuozhen Bao; Shaohui Wang; Xinyi Lisa Chen; Fu Gao; Dejiang Wang; Hang Xu; Cong Ma; Xing Lou; Yang Liu; Jinmiao Chen; Nenad Sestan; Per Uhlén; Arnold Kriegstein; Hongyu Zhao; Gonçalo Castelo-Branco; Rong Fan

UNICORN: Towards universal cellular expression prediction with a multi-task learning framework UNICORN：基于多任务学习框架的通用细胞表达预测

Nature Communications

IF15.7

2025-10-27

OAAI

Tianyu Liu; Tinglin Huang; Lijun Wang; Yingxin Lin; Rex Ying; Hongyu Zhao

The current landscape and emerging challenges of benchmarking single-cell methods 单细胞方法基准测试的当前格局与新兴挑战

BRIEFINGS IN BIOINFORMATICS

IF7.7

2025-09-01

OAAI

Cao, Yue; Yu, Lijia; Torkel, Marni; Kim, Sanghyun; Lin, Yingxin; Yang, Pengyi; Speed, Terence P.; Ghazanfar, Shila; Yang, Jean Yee Hwa

Interpretable Differential Abundance Signature (iDAS)可解释的差异性丰度特征 (iDAS)

SMALL METHODS

IF9.1

2025-05-27

OAAI

Yu, Lijia; Lin, Yingxin; Xu, Xiangnan; Yang, Pengyi

Pt loaded CoFe2O4-based nanoparticles for breast cancer treatment with chemodynamic therapy and sonodynamic therapy 负载Pt的CoFe2O4-based纳米颗粒用于化学动力学和声动力疗法治疗乳腺癌

CERAMICS INTERNATIONAL

IF5.6

2025-01-01

PREAI

Xie, Zhenze; Huang, Yucheng; Wang, Jingguang; Guo, Wenxin; Lin, Yutao; Lin, Yingxin; Du, Chang

Antecedent Cardiac Arrest Status of Donation After Circulatory Determination of Death (DCDD) Kidney Donors and the Risk of Delayed Graft Function After Kidney Transplantation: A Cohort Study

TRANSPLANTATION

IF5

2024-09-24

PREAI

Philipoff, Adam; Lin, Yingxin; Teixeira-Pinto, Armando; Gately, Ryan; Craig, Jonathan C.; Opdam, Helen; Chapman, Jeremy C.; Pleass, Henry; Rogers, Natasha M.; Davies, Christopher E.; McDonald, Stephen; Yang, Jean; Lopez, Pedro; Wong, Germaine; Lim, Wai H.

Single-cell RNA sequencing reveals melanoma cell state- dependent heterogeneity of response to MAPK inhibitors 单细胞RNA测序揭示了黑色素瘤细胞对MAPK抑制剂反应的状态依赖性异质性

EBIOMEDICINE

IF10.8

2024-09-01

OAAI

Lim, Su Yin; Lin, Yingxin; Lee, Jenny H.; Pedersen, Bernadette; Stewart, Ashleigh; Scolyer, Richard A.; Long, Georgina V.; Yang, Jean Y. H.; Rizos, Helen

SANTO: a coarse-to-fine alignment and stitching method for spatial omics SANTO: 一种用于空间组学的从粗到细的对齐和拼接方法

NATURE COMMUNICATIONS

IF15.7

2024-07-18

OAAI

Li, Haoyang; Lin, Yingxin; He, Wenjia; Han, Wenkai; Xu, Xiaopeng; Xu, Chencheng; Gao, Elva; Zhao, Hongyu; Gao, Xin

BIDCell: Biologically-informed self-supervised learning for segmentation of subcellular spatial transcriptomics data BIDCell: 用于分割亚细胞空间转录组数据的生物信息自我监督学习

NATURE COMMUNICATIONS

IF15.7

2024-01-13

OAAI

Fu, Xiaohang; Lin, Yingxin; Lin, David M.; Mechtersheimer, Daniel; Wang, Chuhan; Ameen, Farhan; Ghazanfar, Shila; Patrick, Ellis; Kim, Jinman; Yang, Jean Y. H.

Data integration and inference of gene regulation using single-cell temporal multimodal data with scTIE 使用scTIE的单细胞时态多模态数据进行基因调控的数据集成和推断

GENOME RESEARCH

IF5.5

2023-12-15

OAAI

Lin, Yingxin; Wu, Tung-Yu; Chen, Xi; Wan, Sheng; Chao, Brian; Xin, Jingxue; Yang, Jean Y. H.; Wong, Wing H.; Wang, Y. X. Rachel

Gene regulatory network reconstruction: harnessing the power of single-cell multi-omic data 基因调控网络重建: 利用单细胞多组数据的力量

NPJ SYSTEMS BIOLOGY AND APPLICATIONS

IF3.5

2023-10-19

OAAI

Kim, Daniel; Tran, Andy; Kim, Hani Jieun; Lin, Yingxin; Yang, Jean Yee Hwa; Yang, Pengyi

simKAP: simulation framework for the kidney allocation process with decision making model simKAP: 带有决策模型的肾脏分配过程仿真框架

SCIENTIFIC REPORTS

IF3.9

2023-09-29

OAAI

Zhang, Yunwei; Hu, Anne; Lin, Yingxin; Cao, Yue; Muller, Samuel; Wong, Germaine; Yang, Jean Yee Hwa

Atlas-scale single-cell multi-sample multi-condition data integration using scMerge2 使用scMerge2的Atlas尺度单细胞多样本多条件数据集成

NATURE COMMUNICATIONS

IF15.7

2023-07-17

OAAI

Lin, Yingxin; Cao, Yue; Willie, Elijah; Patrick, Ellis; Yang, Jean Y. H.

Trajectories of systolic blood pressure decline in kidney transplant donors prior to circulatory death and delayed graft function 肾移植供体在循环死亡和移植功能延迟之前收缩压下降的轨迹

CLINICAL KIDNEY JOURNAL

IF4.6

2023-03-15

OAAI

Lin, Yingxin; Teixeira-Pinto, Armando; Craig, Jonathan C.; Opdam, Helen; Chapman, Jeremy C.; Pleass, Henry; Carter, Angus; Rogers, Natasha M.; Davies, Christopher E.; McDonald, Stephen; Yang, Jean; Lim, Wai H.; Wong, Germaine

研究方向