logo
科言猫学术研究的AI总结
language
手机端手机端
  • Phone Feature微信小程序
简体中文简体中文
notice消息通知
博客博客
delete
arrow
返回
J

Jiřı́ Šponer

Czech Academy of Sciences

87H指数
641论文数
3.5W被引数
收录论文 247
发表时间
logo
Toward Accurate RNA Folding Thermodynamics: Evaluation of Enhanced Sampling Methods for Force Field Benchmarking迈向精确的RNA折叠热力学：用于力场基准测试的增强采样方法评估
errJournal of Chemical Theory and Computation
IF5.5
err2026-05-14
err0
errOAAI
errPetra Kührová; Vojtěch Mlýnský; Ivo Frébort; Jitka Frébortová; Michal Otyepka; Jiří Šponer; Pavel Banáš
err分享
err收藏
Newton’s cradle-like allosteric mechanism explains regulatory RsmE RNA binding牛顿摆式别构机制解释了调控性RsmE RNA的结合
errNature Communications
IF15.7
err2026-04-22
err0
errOAAI
errEsteban Finol; Fred F. Damberger; Miroslav Krepl; Timo Flügel; Priscilla Dietrich; Thomas C. T. Michaels; Beat Vögeli; Jiří Šponer; Frédéric H-T. Allain
err分享
err收藏
Destabilization of Structured RNAs by OPC and TIP4PD Water ModelsOPC和TIP4PD水模型对结构化RNA的失稳作用
errJournal of Chemical Theory and Computation
IF5.5
err2026-02-01
err0
errOAAI
errKrepl, Miroslav; Mlynsky, Vojtech; Rusnakova, Agnesa; Banas, Pavel; Otyepka, Michal; Sponer, Jiri
err分享
err收藏
Deciphering the intermolecular interactions between G-quadruplex (G4)-forming sequences解析G-四链体（G4）形成序列间的分子间相互作用
errNUCLEIC ACIDS RESEARCH
IF13.1
err2025-12-11
err0
errOAAI
errXia, Jianjun; Zhou, Jiahang; Zhuang, Xinzhe; Ju, Huangxian; Monchaud, David; Chaires, Jonathan B.; Sponer, Jiri; Mergny, Jean-Louis; Zhou, Jun
err分享
err收藏
The Kink-Turn 7 Motif: An Additional Test for RNA Force Field Performance扭结7基序: RNA力场性能的附加测试
errJOURNAL OF CHEMICAL THEORY AND COMPUTATION
IF5.5
err2025-12-01
err0
PREAI
errLemmens, Toon; Mlynsky, Vojtech; Sponer, Jiri; Pykal, Martin; Banas, Pavel; Otyepka, Michal; Krepl, Miroslav
err分享
err收藏
Interaction of Carbon Dots with Nucleic Acids Is Driven by Their Surface Charge碳点与核酸的相互作用是由它们的表面电荷驱动的
errJOURNAL OF CHEMICAL INFORMATION AND MODELING
IF5.3
err2025-12-01
err0
PREAI
errNedelnikova, Andrea; Stadlbauer, Petr; Banas, Pavel; Sponer, Jiri; Otyepka, Michal; Kuhrova, Petra; Paloncyova, Marketa
err分享
err收藏
Structural basis of bis-quinolinium ligands binding to quadruplex-duplex hybrids from PIM1 oncogenePIM1原癌基因中bis-quinolinium配体与四链体-双链体杂合物的结合结构基础
errNUCLEIC ACIDS RESEARCH
IF13.1
err2025-09-23
err0
PREAI
errGhosh, Anirban; Harnos, Jakub; Stadlbauer, Petr; Sponer, Jiri; Zivkovic, Martina Lenarcic; Trantirek, Lukas
err分享
err收藏
RNA G-quadruplexes emerge from a compacted coil-like ensemble via multiple pathwaysRNA G-四联体通过多种途径从紧密的螺旋状集合体中形成。
errNUCLEIC ACIDS RESEARCH
IF13.1
err2025-09-23
err0
PREAI
errPokorna, Pavlina; Mlynsky, Vojtech; Sponer, Jiri; Stadlbauer, Petr
err分享
err收藏
Can We Ever Develop an Ideal RNA Force Field? Lessons Learned from Simulations of the UUCG RNA Tetraloop and Other Systems我们能开发出理想的RNA力场吗？从UUCG RNA四环和其他系统的模拟中吸取的经验教训
errJOURNAL OF CHEMICAL THEORY AND COMPUTATION
IF5.5
err2025-01-15
err0
errOAAI
errMlynsky, Vojtech; Kuhrova, Petra; Pykal, Martin; Krepl, Miroslav; Stadlbauer, Petr; Otyepka, Michal; Banas, Pavel; Sponer, Jiri
err分享
err收藏
How Binding Site Flexibility Promotes RNA Scanning by TbRGG2 RRM: A Molecular Dynamics Simulation Study结合位点的灵活性如何促进TbRGG2 RRM的RNA扫描: 分子动力学模拟研究
errJOURNAL OF CHEMICAL INFORMATION AND MODELING
IF5.3
err2025-01-13
err0
errOAAI
errLemmens, Toon; Sponer, Jiri; Krepl, Miroslav
err分享
err收藏
Refinement of the Sugar Puckering Torsion Potential in the AMBER DNA Force Field琥珀DNA力场中糖起皱扭转势的精化
errJOURNAL OF CHEMICAL THEORY AND COMPUTATION
IF5.5
err2025-01-03
err1
errOAAI
errZgarbova, Marie; Sponer, Jiri; Jurecka, Petr
err分享
err收藏
The Drosophila RNA binding protein Hrp48 binds a specific RNA sequence of the msl-2 mRNA 3' UTR to regulate translation果蝇RNA结合蛋白Hrp48结合msl-2 mRNA 3'utr的特定RNA序列以调节翻译
errBIOPHYSICAL CHEMISTRY
IF2.2
err2025-01-01
err2
errOAAI
errLomoschitz, Andrea; Meyer, Julia; Guitart, Tanit; Krepl, Miroslav; Lapouge, Karine; Hayn, Clara; Schweimer, Kristian; Simon, Bernd; Sponer, Jiri; Gebauer, Fatima; Hennig, Janosch
err分享
err收藏
Computer Folding of Parallel DNA G-Quadruplex: Hitchhiker's Guide to the Conformational Space
errJOURNAL OF COMPUTATIONAL CHEMISTRY
IF4.8
err2024-12-09
err0
PREAI
errJanecek, Michal; Kuhrova, Petra; Mlynsky, Vojtech; Stadlbauer, Petr; Otyepka, Michal; Bussi, Giovanni; Sponer, Jiri; Banas, Pavel
err分享
err收藏
N-terminal domain of polypyrimidine-tract binding protein is a dynamic folding platform for adaptive RNA recognition
errNUCLEIC ACIDS RESEARCH
IF13.1
err2024-08-24
err1
errOAAI
errDamberger, Fred F.; Krepl, Miroslav; Arora, Rajika; Beusch, Irene; Maris, Christophe; Dorn, Georg; Sponer, Jiri; Ravindranathan, Sapna; Allain, Frederic H-T
err分享
err收藏
Phosphoric acid salts of amino acids as a source of oligopeptides on the early Earth
errCOMMUNICATIONS CHEMISTRY
IF6.2
err2024-08-22
err0
errOAAI
errSponer, Judit E.; Coulon, Remi; Otyepka, Michal; Sponer, Jiri; Siegle, Alexander F.; Trapp, Oliver; Slepokura, Katarzyna; Zdrahal, Zbynek; Sedo, Ondrej
err分享
err收藏
Comprehensive Assessment of Force-Field Performance in Molecular Dynamics Simulations of DNA/RNA Hybrid DuplexesDNA/RNA杂交双链体分子动力学模拟中力场性能的综合评估
errJOURNAL OF CHEMICAL THEORY AND COMPUTATION
IF5.5
err2024-07-16
err6
errOAAI
errKnappeova, Barbora; Mlynsky, Vojtech; Pykal, Martin; Sponer, Jiri; Banas, Pavel; Otyepka, Michal; Krepl, Miroslav
err分享
err收藏
Sensitivity of the RNA Structure to Ion Conditions as Probed by Molecular Dynamics Simulations of Common Canonical RNA Duplexes (vol 63, pg 2133, 2023)通过普通规范RNA双链体的分子动力学模拟来探测RNA结构对离子条件的敏感性 (第63卷，2133页，2023)
errJOURNAL OF CHEMICAL INFORMATION AND MODELING
IF5.3
err2024-06-27
err0
errOAAI
errKuhrova, Petra; Mlynsky, Vojtech; Otyepka, Michal; Sponer, Jiri; Banas, Pavel
err分享
err收藏
Structure of an internal loop motif with three consecutive U•U mismatches from stem-loop 1 in the 3′-UTR of the SARS-CoV-2 genomic RNA
errNUCLEIC ACIDS RESEARCH
IF13.1
err2024-05-23
err2
errOAAI
errVoegele, Jennifer; Duchardt-Ferner, Elke; Bains, Jasleen Kaur; Knezic, Bozana; Wacker, Anna; Sich, Christian; Weigand, Julia E.; Sponer, Jiri; Schwalbe, Harald; Krepl, Miroslav; Woehnert, Jens
err分享
err收藏
Mechanical Stability and Unfolding Pathways of Parallel Tetrameric G-Quadruplexes Probed by Pulling Simulations通过拉动模拟探测的平行四聚体G-四链体的机械稳定性和展开途径
errJOURNAL OF CHEMICAL INFORMATION AND MODELING
IF5.3
err2024-04-17
err0
errOAAI
errZhang, Zhengyue; Mlynsky, Vojtech; Krepl, Miroslav; Sponer, Jiri; Stadlbauer, Petr
err分享
err收藏
Molecular dynamics simulations reveal the parallel stranded d (GGGA)3GGG DNA quadruplex folds via multiple paths from a coil-like ensemble
errINTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES
IF8.5
err2024-03-01
err2
errOAAI
errPokorna, Pavlina; Mlynsky, Vojtech; Bussi, Giovanni; Sponer, Jiri; Stadlbauer, Petr
err分享
err收藏

研究方向

暂无研究方向
合作学者
合作期刊
A
Ali H. Mokdad
H 指数: 215 · 论文数: 933
S
Stefan Grimme
H 指数: 136 · 论文数: 1.5K
P
Pavel Hobza
H 指数: 115 · 论文数: 704
J
Jack W. Szostak
H 指数: 112 · 论文数: 573
H
Huangxian Ju
H 指数: 112 · 论文数: 1.0K
查看更多