Matthew T. Weirauch - Publications, H-index & Citations

Matthew T. Weirauch

university of cincinnati college of medicine

65H指数

386论文数

3.1W被引数

收录论文 150

发表时间

Functional characterization of viral transcriptional regulators reveals extensive rewiring of host pathways 病毒转录调控因子的功能表征揭示了宿主通路的大规模重编程

Nature Communications

IF15.7

2026-09-17

OAAI

Jaice T. Rottenberg; Xing Liu; Mohamed Y. ElSadec; Anna Lagani; Luis F. Soto-Ugaldi; James E. Corban; Phillip J. Dexheimer; Matthew Hass; Clarissa Santoso; Cailing Yin; Berkay Engin; Ryan Lane; Sakshi Shah; Kerstin Spirohn-Fitzgerald; Shubham Khetan; Cheng-Che Lee; George Muñoz-Esquivel; Zhaorong Li; Lucia Martinez-Cuesta; Yunwei Lu; Philipp Trollmann; Tong Hao; S. Stephen Yi; Nidhi Sahni; Martha L. Bulyk; Michael A. Calderwood; Leah Kottyan; Matthew T. Weirauch; Marc Vidal; Srivatsan Raman; Juan I. Fuxman Bass

An expanded codebook of human transcription factor DNA-binding specificity 人类转录因子DNA结合特异性的扩展编码本

Nature

IF48.5

2026-08-05

OAAI

Arttu Jolma; Kaitlin U. Laverty; Ali Fathi; Ally W. H. Yang; Isaac Yellan; Ilya E. Vorontsov; Antoni J. Gralak; Judith F. Kribelbauer-Swietek; Sachi Inukai; Rozita Razavi; Mihai Albu; Alexander Brechalov; Zain M. Patel; Vladimir Nozdrin; Georgy Meshcheryakov; Andrey Buyan; Ivan Kozin; Sergey Abramov; Alexandr Boytsov; Quaid Morris; Matthew T. Weirauch; Oriol Fornes; Vsevolod J. Makeev; Jan Grau; Ivo Grosse; Philipp Bucher; Bart Deplancke; Ivan V. Kulakovskiy; Timothy R. Hughes

High-resolution promoter interaction analysis implicates genes involved in activation of type 3 innate lymphoid cells in immune disease risk 高分辨率启动子相互作用分析揭示了与固有淋巴样细胞3型激活相关的基因在免疫疾病风险中的作用

Nature Genetics

IF29

2026-08-04

OAAI

Valeriya Malysheva; Helen Ray-Jones; Nora Lakes; Rachel A. Brown; Tareian A. Cazares; Owen Clay; David E. Ohayon; Pavel Artemov; Joseph A. Wayman; Zi F. Yang; Monica Della Rosa; Carmen Petitjean; Clarissa Booth; Joseph I. J. Ellaway; Jenna R. Barnes; Andrew W. Dangel; Ankita Saini; William R. Orchard; Xiaoting Chen; Sreeja Parameswaran; Frances Burden; Mattia Frontini; Takashi Nagano; Peter Fraser; Stefan Schoenfelder; Matthew T. Weirauch; Leah C. Kottyan; David F. Smith; Nick Powell; Jill M. Weimer; Eugene M. Oltz; Chris Wallace; Emily R. Miraldi; Stephen N. Waggoner; Mikhail Spivakov

Genome sequencing and multi-stage, blood-feeding, and tissue-specific transcriptome atlas of the Rocky Mountain wood tick provide a critical resource for this vector 落基山木蜱的基因组测序及其多阶段、吸血和组织的特异转录组图谱为该媒介提供了关键资源

Insect Biochemistry and Molecular Biology

IF3.7

2026-08-01

PREAI

Tompkin, Joshua E.; Saelao, Perot; Kruczalak, Justyna; Yeo, Huiqing; Olafson, Pia U.; Sim, Sheina B.; Oyen, Kennan; Kelley, Melissa; Corpuz, Renee L.; Scheffler, Brian; Geib, Scott M.; Childers, Anna K.; Chen, Xiaoting; Weirauch, Matthew T.; Dergousoff, Shaun J.; Soghigian, John; Noh, Susan M.; Benoit, Joshua B.

PTPN13 Contributes to Ebola Virus-Induced Immune Dysregulation via Dephosphorylation of IRF3 and PI3K-p85 PTPN13通过去磷酸化IRF3和PI3K-p85参与埃博拉病毒诱导的免疫失调

Viruses

IF3.5

2026-07-02

OAAI

Abbey N. Warren; Maria Gonzalez-Orozco; Ivan Kuzmin; Sreeja Parameswaran; Ruben Soto Acosta; Birte Kalveram; Sarah van Tol; Adam Hage; Padmanava Behera; Yoatzin Peñaflor-Tellez; Maria I. Giraldo; William Russell; Matthew T. Weirauch; Alexander Freiberg; Alexander Bukreyev; Ricardo Rajsbaum

Multi-trait Analysis of GWAS Expands Eosinophilic Esophagitis Genetic Susceptibility and Polygenic Risk Scores 多性状全基因组关联研究分析扩展了嗜酸性食管炎的遗传易感性和多基因风险评分

Journal of Allergy and Clinical Immunology

IF11.2

2026-03-20

PREAI

Michael P. Trimarchi; Bahram Namjou-Khales; Netali Ben-Baruch Morgenstern; Mark Rochman; Xiaoting Chen; Garrett A. Osswald; John A. Besse; Molly S. Shook; Julie M. Caldwell; Michael Lape; Tetsuo Shoda; Matthew T. Weirauch; Melanie A. Ruffner; Gregory M. Constantine; Lisa J. Martin; Leah C. Kottyan; Marc E. Rothenberg

Convergent DNA methylation abnormalities at enhancers and bivalent promoters in human growth disorders 增强子和双价启动子上的趋同性DNA甲基化异常在人类生长障碍中的作用

Epigenetics & Chromatin

IF3.5

2025-12-27

OAAI

Marie E. S. Wheeler; Yoshiko Takahashi; Jihye Lee; Camille T. Perez; Xiaoting Chen; Yuri Lee; Zachary S. Pope; Daniella J. Lu; Marcus Seldin; Ivan Marazzi; Hongseok Yun; Matthew T. Weirauch; Minji Byun

Epigenetic and transcriptional programming of murine eosinophils in the esophagus 小鼠食管嗜酸性粒细胞表观遗传和转录编程

Nature Communications

IF15.7

2025-11-25

OAAI

Jennifer M. Felton; Lee E. Edsall; Ty D. Troutman; Lydia Mack; Michael Kotliar; Netali Ben-Baruch Morgenstern; Annalise M. Psaila; Mark Rochman; Andrea M. Klingler; Garrett A. Osswald; Simin Zhang; Julia L. M. Dunn; Ben Wronowski; Tetsuo Shoda; Julie M. Caldwell; Rana Herro; Artem Barski; Kate G. R. Quinlan; Matthew T. Weirauch; Marc E. Rothenberg

Cross-platform motif discovery and benchmarking to explore binding specificities of poorly studied human transcription factors 跨平台基序发现与基准测试，以探索研究较少的人类转录因子的结合特异性

Communications Biology

IF5.1

2025-11-07

OAAI

Ilya E. Vorontsov; Ivan Kozin; Sergey Abramov; Alexandr Boytsov; Arttu Jolma; Mihai Albu; Giovanna Ambrosini; Katerina Faltejskova; Antoni J. Gralak; Nikita Gryzunov; Sachi Inukai; Semyon Kolmykov; Pavel Kravchenko; Judith F. Kribelbauer-Swietek; Kaitlin U. Laverty; Vladimir Nozdrin; Zain M. Patel; Dmitry Penzar; Marie-Luise Plescher; Sara E. Pour; Rozita Razavi; Ally W. H. Yang; Ivan Yevshin; Arsenii Zinkevich; Matthew T. Weirauch; Philipp Bucher; Bart Deplancke; Oriol Fornes; Jan Grau; Ivo Grosse; Fedor A. Kolpakov; Vsevolod J. Makeev; Timothy R. Hughes; Ivan V. Kulakovskiy

CisBP-RNA: a web resource for eukaryotic RNA-binding proteins and their motifs CisBP-RNA：一个用于真核RNA结合蛋白及其基序的网页资源

NUCLEIC ACIDS RESEARCH

IF13.1

2025-10-01

OAAI

Rosado-Tristani, Diego A.; Albu, Mihai; Chen, Xiaoting; Sasse, Alexander; Laverty, Kaitlin U.; Ray, Debashish; Tam, Cyrus L.; Ernst, Kevin; Lawson, Lucinda P.; Morris, Quaid D.; Hughes, Timothy R.; Weirauch, Matthew T.

Human cytomegalovirus infection coopts chromatin organization to diminish TEAD1 transcription factor activity 人巨细胞病毒感染劫持染色质组织以减弱TEAD1转录因子活性

ELIFE

IF0

2025-09-10

OAAI

Sayeed, Khund; Parameswaran, Sreeja; Beucler, Matthew J.; Edsall, Lee E.; VonHandorf, Andrew; Crowther, Audrey; Donmez, Omer A.; Hass, Matthew R.; Richards, Scott; Forney, Carmy R.; Hesse, Hayley K.; Jones, Sydney H.; Dunn, Katelyn A.; Wright, Jay; Leong, Merrin Man Long; Murray-Nerger, Laura A.; Yechoor, Vijay; Gewurz, Ben E.; Kaufman, Kenneth M.; Harley, John B.; Zhao, Bo; Miller, William E.; Kottyan, Leah C.; Weirauch, Matthew T.

Genome-wide discovery of multiple sclerosis genetic risk variant allelic regulatory activity 全基因组发现多发性硬化症遗传风险变异位点的等位基因调控活性

G3-GENES GENOMES GENETICS

IF2.2

2025-09-01

OAAI

Granitto, Marissa; Parks, Lois; Shook, Molly S.; Forney, Carmy; Chen, Xiaoting; Edsall, Lee E.; Donmez, Omer A.; Parameswaran, Sreeja; Fisher, Kristen S.; Zabeti, Aram; Lawson, Lucinda P.; Weirauch, Matthew T.; Kottyan, Leah C.

Massively parallel analysis of genotype-dependent enhancer activity among atopic dermatitis genetic risk variants 大规模并行分析特应性皮炎遗传风险变异中的基因型依赖性增强子活性

Journal of Allergy and Clinical Immunology

IF11.2

2025-08-20

OAAI

Molly S. Shook; Xiaoming Lu; Xiaoting Chen; Lee E. Edsall; Marissa Granitto; Samuel J. Virolainen; Carmy Forney; Omer A. Donmez; Sreeja Parameswaran; Catherine Fadden; Phillip J. Dexheimer; Seth Jenkins; Brittany Grashel; Kenneth M. Kaufman; Gurjit Khurana Hershey; Lisa J. Martin; Latha Satish; Matthew T. Weirauch; Leah C. Kottyan

Splicing regulatory dynamics for precision analysis and treatment of heterogeneous leukemias 异质性白血病精准分析与治疗的剪接调控动力学

SCIENCE TRANSLATIONAL MEDICINE

IF14.6

2025-05-07

PREAI

Venkatasubramanian, Meenakshi; Schwartz, Leya; Ramachandra, Nandini; Bennett, Joshua; Subramanian, Krithika R.; Chen, Xiaoting; Gordon-Mitchell, Shanisha; Fromowitz, Ariel; Pradhan, Kith; Shechter, David; Sahu, Srabani; Heiser, Diane; Scherle, Peggy; Chetal, Kashish; Kulkarni, Aishwarya; Lee, Davy; Zhou, Jeff; Myers, Kasiani C.; Tseng, Elizabeth; Weirauch, Matthew T.; Grimes, H. Leighton; Starczynowski, Daniel T.; Verma, Amit; Salomonis, Nathan

GDF10 promotes rodent cardiomyocyte maturation during the postnatal period

JOURNAL OF MOLECULAR AND CELLULAR CARDIOLOGY

IF4.7

2025-04-01

PREAI

Calderon, Maria Uscategui; Spaeth, Maria L.; Granitto, Marissa; Gonzalez, Brittany A.; Weirauch, Matthew T.; Kottyan, Leah C.; Yutzey, Katherine E.

A Single-Cell Transcriptome Atlas of Epithelial Subpopulations in HPV-Positive and HPV-Negative Head and Neck Cancers HPV阳性与HPV阴性头颈癌中上皮亚群的单细胞转录组图谱

VIRUSES-BASEL

IF3.5

2025-03-24

OAAI

Bedard, Mary C.; Rivera-Cruz, Cosette M.; Chihanga, Tafadzwa; VonHandorf, Andrew; Tang, Alice L.; Zender, Chad; Weirauch, Matthew T.; Ferris, Robert; Wise-Draper, Trisha M.; Adam, Mike; Wells, Susanne I.

Silencing TET1 expression alters the epigenomic landscape and amplifies transcriptomic responses to allergen in airway epithelial cells 沉默TET1表达改变了表观基因组景观，并放大了气道上皮细胞对过敏原的转录组反应。

ENVIRONMENTAL EPIGENETICS

IF3.2

2025-03-20

OAAI

Brown, Anthony P.; Parameswaran, Sreeja; Cai, Lucy; Elston, Sweeney; Pham, Chi; Barski, Artem; Weirauch, Matthew T.; Ji, Hong

Diaci v3.0: chromosome-level assembly, de novo transcriptome, and manual annotation of Diaphorina citri, insect vector of Huanglongbing

GIGASCIENCE

IF3.9

2024-12-20

OAAI

Shippy, Teresa D.; Hosmani, Prashant S.; Flores-Gonzalez, Mirella; Mann, Marina; Miller, Sherry; Weirauch, Matthew T.; Vosberg, Chad; Massimino, Crissy; Tank, Will; de Oliveira, Lucas; Chen, Chang; Hoyt, Stephanie; Adams, Rebekah; Adkins, Samuel; Bailey, Samuel T.; Chen, Xiaoting; Davis, Nina; Delaflor, Yesmarie; Espino, Michelle; Gervais, Kylie; Grace, Rebecca; Harper, Douglas; Hasan, Denisse L.; Hoang, Maria; Holcomb, Rachel; Jernigan, Margaryta R.; Kemp, Melissa; Kennedy, Bailey; Kercher, Kyle; Klaessan, Stefan; Kruse, Angela; Licata, Sophia; Lu, Andrea; Masse, Ron; Mathew, Anuja; Michels, Sarah; Michels, Elizabeth; Neiman, Alan; Norman, Seantel; Norus, Jordan; Ortiz, Yasmin; Panitz, Naftali; Paris, Thomson; Perentesis, Kitty M. R.; Perry, Michael; Reynolds, Max; Sena, Madison M.; Tamayo, Blessy; Thate, Amanda; Vandervoort, Sara; Ventura, Jessica; Weis, Nicholas; Wise, Tanner; Shatters, Robert G.; Heck, Michelle; Benoit, Joshua B.; Hunter, Wayne B.; Mueller, Lukas A.; Brown, Susan J.; D'Elia, Tom; Saha, Surya

Lineage tracing of nuclei in skeletal myofibers uncovers distinct transcripts and interplay between myonuclear populations 骨骼肌肌原纤维中细胞核的谱系示踪揭示了不同转录本以及肌细胞核群体之间的相互作用

NATURE COMMUNICATIONS

IF15.7

2024-10-30

OAAI

Sun, Chengyi; Swoboda, Casey O.; Morales, Fabian Montecino; Calvo, Cristofer; Petrany, Michael J.; Parameswaran, Sreeja; Vonhandorf, Andrew; Weirauch, Matthew T.; Lepper, Christoph; Millay, Douglas P.

High-throughput identification of functional regulatory SNPs in systemic lupus erythematosus

NATURE COMMUNICATIONS

IF15.7

2024-08-09

OAAI

Wang, Qiang; Kim, Taehyeung; Martinez-Bonet, Marta; Aguiar, Vitor R. C.; Sim, Sangwan; Cui, Jing; Sparks, Jeffrey A.; Chen, Xiaoting; Todd, Marc; Wauford, Brian; Marion, Miranda C.; Langefeld, Carl D.; Weirauch, Matthew T.; Gutierrez-Arcelus, Maria; Nigrovic, Peter A.

研究方向