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VARIANT WORKBENCH IN THE KIDS FIRST PROGRAM FACILITATES GENOMIC DISCOVERIES IN PEDIATRIC NEURO-ONCOLOGY RESEARCH Guo, Yiran; Li, Qi; Rozowsky, Jare; Costanza, Jeremy; Mattioni, Michele; Thibert, Jean-Philippe; Brown, Miguel; Higgins, David; Zhu, Yuankun; Heath, Allison; Resnick, Adam; Ferretti, Vincent 分享 收藏
INTEGRATED GERMLINE AND SOMATIC PROFILING OF PEDIATRIC BRAIN TUMORS REVEALS INCIDENTAL FINDINGS AND NOVEL TUMOR BIOLOGY Corbett, Ryan J.; Kaufman, Rebecca; McQuaid, Shelly W.; Vaksman, Zalman; Phul, Saksham; Brown, Miguel A.; Mason, Jennifer L.; Desai, Heena; Hausler, Ryan; Naqvi, Ammar S.; Chroni, Antonia; Geng, Zhuangzhuang; Zhang, Bo; Zhong, Chuwei; Zhu, Yuankun; Heath, Allison P.; Li, Marilyn; Storm, Phillip B.; Resnick, Adam C.; Maxwell, Kara N.; Bornhorst, Miriam; Cole, Kristina A.; Waanders, Angela J.; MacFarland, Suzanne P.; Rokita, Jo Lynne; Diskin, Sharon J. 分享 收藏
cBioPortal for Cancer Genomics Mazor, Tali; de Bruijn, Ino; AlHamad, Rima; Chennault, Calla; Dubin, Corey; Easton-Marks, Jeremy; Fu, Zhaoyuan; Gross, Benjamin; Haynes, Charles; Higgins, David M.; Hwee, Jason; Jagannathan, Prasanna K.; Kalafati, Mirella; Kalletla, Karthik; Ko, James; Kuijpers, Tim; Kumar, Sowmiyaa; Kumari, Priti; Kundra, Ritika; Lai, Bryan; Li, Xiang; Lindsay, James; Lisman, Aaron; Lu, Qi-Xuan; Madupuri, Ramyasree; Ochoa, Angelica; Ozgul, Yusuf Z.; Plantalech, Oleguer; Pon, Matthijs N.; Satravada, Baby A.; Singh, Jessica; Sumer, Selcuk Onur; van Nierop, Pim; Vleugels, Floris; Wang, Avery; Wilson, Manda; Zhang, Hongxin; Zhao, Gaofei; Dogrusoz, Ugur; Heath, Allison; Resnick, Adam; Pugh, Trevor J.; Sander, Chris; Cerami, Ethan; Gao, Jianjiong; Schultz, Nikolaus 分享 收藏
Germline pathogenic variants are enriched in pediatric central nervous system tumor patients and associate with somatic functional consequences Corbett, Ryan J.; Kaufman, Rebecca; McQuaid, Shelly W.; Vaksman, Zalman; Phul, Saksham; Brown, Miguel A.; Mason, Jennifer L.; Desai, Heena; Hausler, Ryan; Naqvi, Ammar S.; Chroni, Antonia; Geng, Zhuangzhuang; Zhang, Bo; Zhong, Chuwei; Zhu, Yuankun; Heath, Allison P.; Li, Marilyn; Storm, Phillip B.; Resnick, Adam C.; Maxwell, Kara N.; Bornhorst, Miriam; Cole, Kristina A.; Waanders, Angela J.; MacFarland, Suzanne P.; Rokita, Jo Lynne; Diskin, Sharon J. 分享 收藏
Analysis and Visualization of Longitudinal Genomic and Clinical Data from the AACR Project GENIE Biopharma Collaborative in cBioPortal 来自AACR项目GENIE Biopharma Collaborative的纵向基因组和临床数据的分析和可视化 de Bruijn, Ino; Kundra, Ritika; Mastrogiacomo, Brooke; Tran, Thinh Ngoc; Sikina, Luke; Mazor, Tali; Li, Xiang; Ochoa, Angelica; Zhao, Gaofei; Lai, Bryan; Abeshouse, Adam; Baiceanu, Diana; Ciftci, Ersin; Dogrusoz, Ugur; Dufilie, Andrew; Erkoc, Ziya; Lara, Elena Garcia; Fu, Zhaoyuan; Gross, Benjamin; Haynes, Charles; Heath, Allison; Higgins, David; Jagannathan, Prasanna; Kalletla, Karthik; Kumari, Priti; Lindsay, James; Lisman, Aaron; Leenknegt, Bas; Lukasse, Pieter; Madela, Divya; Madupuri, Ramyasree; van Nierop, Pim; Plantalech, Oleguer; Quach, Joyce; Resnick, Adam C.; Rodenburg, Sander Y. A.; Satravada, Baby A.; Schaeffer, Fedde; Sheridan, Robert; Singh, Jessica; Sirohi, Rajat; Sumer, Selcuk Onur; van Hagen, Sjoerd; Wang, Avery; Wilson, Manda; Zhang, Hongxin; Zhu, Kelsey; Rusk, Nicole; Brown, Samantha; Lavery, Jessica A.; Panageas, Katherine S.; Rudolph, Julia E.; LeNoue-Newton, Michele L.; Warner, Jeremy L.; Guo, Xindi; Hunter-Zinck, Haley; Yu, Thomas V.; Pilai, Shirin; Nichols, Chelsea; Gardos, Stuart M.; Philip, John; Kehl, Kenneth L.; Riely, Gregory J.; Schrag, Deborah; Lee, Jocelyn; Fiandalo, Michael V.; Sweeney, Shawn M.; Pugh, Trevor J.; Sander, Chris; Cerami, Ethan; Gao, Jianjiong; Schultz, Nikolaus 分享 收藏
OpenPBTA: The Open Pediatric Brain Tumor Atlas Shapiro, Joshua A.; Gaonkar, Krutika S.; Spielman, Stephanie J.; Savonen, Candace L.; Bethell, Chante J.; Jin, Run; Rathi, Komal S.; Zhu, Yuankun; Egolf, Laura E.; Farrow, Bailey K.; Miller, Daniel P.; Yang, Yang; Koganti, Tejaswi; Noureen, Nighat; Koptyra, Mateusz P.; Duong, Nhat; Santi, Mariarita; Kim, Jung; Robins, Shannon; Storm, Phillip B.; Mack, Stephen C.; Lilly, Jena, V; Xie, Hongbo M.; Jain, Payal; Raman, Pichai; Rood, Brian R.; Lulla, Rishi R.; Nazarian, Javad; Kraya, Adam A.; Vaksman, Zalman; Heath, Allison P.; Kline, Cassie; Scolaro, Laura; Viaene, Angela N.; Huang, Xiaoyan; Way, Gregory P.; Foltz, Steven M.; Zhang, Bo; Poetsch, Anna R.; Mueller, Sabine; Ennis, Brian M.; Prados, Michael; Diskin, Sharon J.; Zheng, Siyuan; Guo, Yiran; Kannan, Shrivats; Waanders, Angela J.; Margol, Ashley S.; Kim, Meen Chul; Hanson, Derek; Van Kuren, Nicholas; Wong, Jessica; Kaufman, Rebecca S.; Coleman, Noel; Blackden, Christopher; Cole, Kristina A.; Mason, Jennifer L.; Madsen, Peter J.; Koschmann, Carl J.; Stewart, Douglas R.; Wafula, Eric; Brown, Miguel A.; Resnick, Adam C.; Greene, Casey S.; Rokita, Jo Lynne; Taroni, Jaclyn N. 分享 收藏
HARNESSING COMPUTATIONAL IMAGING, SCALABLE CLOUD-BASED WORKFLOWS, AND MULTI-MODAL DATA ANALYTICS WITH INTEROPERABLE SOFTWARE PLATFORMS IN PEDIATRIC NEURO-ONCOLOGY; THE ROAD AHEAD FOR CHILDREN'S BRAIN TUMOR NETWORK (CBTN) Nabavizadeh, Ali; Familiar, Ariana; Kazerooni, Anahita Fathi; Viswanathan, Karthik; Kim, Meen Chul; Lubneuski, Alex; Heath, Allison P.; Vossough, Arastoo; Storm, Phillip B.; Resnick, Adam C. 分享 收藏
cBioPortal for Cancer Genomics de Bruijn, Ino; Mazor, Tali; Abeshouse, Adam; Baiceanu, Diana; Carrero, Stephanie; Lara, Elena Garcia; Gross, Benjamin; Higgins, David M.; Jagannathan, Prasanna K.; Kumari, Priti; Kundra, Ritika; Lai, Bryan; Li, Xiang; Lindsay, James; Lisman, Aaron; Madala, Divya; Madupuri, Ramyasree; Ochoa, Angelica; Ozgul, Yusuf Ziya; Plantalech, Oleguer; Rodenburg, Sander; Satravada, Baby Anusha; Sheridan, Robert; Sikina, Lucas; Singh, Jessica; Sumer, S. Onur; Sun, Yichao; van Nierop, Pim; Wang, Avery; Wilson, Manda; Zhang, Hongxin; Zhao, Gaofei; van Hagen, Sjoerd; Dogrusoz, Ugur; Heath, Allison; Resnick, Adam; Pugh, Trevor J.; Sander, Chris; Cerami, Ethan; Gao, Jianjiong; Schultz, Nikolaus 分享 收藏
PIONEER: harnessing multi-omics data to enhance immunotherapeutic target discovery and development Weiner, Amber K.; Murali, Hemma; Shraim, Rawan; Conkrite, Karina L.; Radaoui, Alexander B.; Martinez, Daniel; Mooney, Brian; Miko, Sandra E. Spencer; Negri, Gian; Delaidelli, Alberto; de Jong, Caitlyn; Zhu, Yuankun; Heath, Allison P.; Pogoriler, Jennifer; Mosse, Yael P.; Taylor, Deanne M.; Sorensen, Poul H.; Morin, Gregg B.; Garcia, Benjamin A.; Maris, John M.; Diskin, Sharon J. 分享 收藏
Expansion of the Pediatric Brain Tumor Atlas: Children's Brain Tumor Network, Kids First Data Resource and Childhood Cancer Data Initiative Open Science effort Koptyra, Mateusz P.; Rahti, Komal; Zhu, Yuankun; Farrow, Bailey; Miller, Daniel; Kraya, Adam; Guo, Yiran; Madsen, Peter; Van Kuren, Nicholas; Huang, Xiaoyan; Brown, Miguel A.; Mason, Jennifer L.; Kim, Meen Chul; Heath, Allison P.; Ennis, Brian M.; Zhang, Bo; Lilly, Jena V.; Rokita, Jo Lynne; Friedman, Christopher; Cuellar, Ximena P.; Sullivan, Catherine A.; Coleman, Noel; Duros, Trang; Nguyen, Thinh Q.; Drake, Emmett C.; Helili, Zeinab; Frenkel, Beth A.; Trooskin, Gerri R.; Familiar, Ariana; Viswanathan, Karthik; Beck, Christopher M.; Hollawell, Madison L.; Baubet, Valerie P.; Kline, Cassie; Santi, Mariarita; Patton, Tatiana S.; Stefankiewicz, Stephanie; Kamnaa, Arya; Velasco, Ryan A.; Cardona, Dani; Storm, Phillip J.; Resnick, Adam C. 分享 收藏
Gabriella Miller Kids First Data Resource Center (KFDRC): Empowering discovery across germline and somatic variation in pediatric cancer Higgins, David; Thibert, Jean-Philippe; Mattioni, Michele; DiGiovanna, Jack; Grossman, Robert L.; Farrow, Bailey K.; Wenger, Eric; Volchenboum, Samuel; Carroll, Robert J.; Haendel, Melissa A.; Taylor, Deanne M.; Zhu, Yuankun; Ferretti, Vincent; Resnick, Adam C.; Heath, Allison P. 分享 收藏
Establishing a multimodal data warehousing platform to accelerate discoveries in pediatric brain tumors for the Children's Brain Tumor Network Farrow, Bailey K.; Van Kuren, Nicholas; Young, Nathan; Friedman, Christopher; Kim, Meen Chul; Lubneuski, Alex; Mason, Jennifer; (Bin) Nguyen, Thinh; Helili, Zeinab; Frenkel, Elizabeth; Sullivan, Catherine; Familiar, Ariana; Zhu, Yuankun; Koptyra, Mateusz; Patton, Tatiana; Lilly, Jena; Storm, Phillip B.; Resnick, Adam; Heath, Allison P. 分享 收藏
The children's brain tumor network (CBTN)-Accelerating research in pediatric central nervous system tumors through collaboration and open science Lilly, Jena, V; Rokita, Jo Lynne; Mason, Jennifer L.; Patton, Tatiana; Stefankiewiz, Stephanie; Higgins, David; Trooskin, Gerri; Larouci, Carina A.; Arya, Kamnaa; Appert, Elizabeth; Heath, Allison P.; Zhu, Yuankun; Brown, Miguel A.; Zhang, Bo; Farrow, Bailey K.; Robins, Shannon; Morgan, Allison M.; Nguyen, Thinh Q.; Frenkel, Elizabeth; Lehmann, Kaitlin; Drake, Emily; Sullivan, Catherine; Plisiewicz, Alexa; Coleman, Noel; Patterson, Luke; Koptyra, Mateusz; Helili, Zeinab; Van Kuren, Nicholas; Young, Nathan; Kim, Meen Chul; Friedman, Christopher; Lubneuski, Alex; Blackden, Christopher; Williams, Marti; Baubet, Valerie; Tauhid, Lamiya; Galanaugh, Jamie; Boucher, Katie; Ijaz, Heba; Cole, Kristina A.; Choudhari, Namrata; Santi, Mariarita; Moulder, Robert W.; Waller, Jonathan; Rife, Whitney; Diskin, Sharon J.; Mateos, Marion; Parsons, Donald W.; Pollack, Ian F.; Goldman, Stewart; Leary, Sarah; Caporalini, Chiara; Buccoliero, Anna Maria; Scagnet, Mirko; Haussler, David; Hanson, Derek; Firestein, Ron; Cain, Jason; Phillips, Joanna J.; Gupta, Nalin; Mueller, Sabine; Grant, Gerald; Monje-Deisseroth, Michelle; Partap, Sonia; Greenfield, Jeffrey P.; Hashizume, Rintaro; Smith, Amy; Zhu, Shida; Johnston, James M.; Fangusaro, Jason R.; Miller, Matthew; Wood, Matthew D.; Gardner, Sharon; Carter, Claire L.; Prolo, Laura M.; Pisapia, Jared; Pehlivan, Katherine; Franson, Andrea; Niazi, Toba; Rubin, Josh; Abdelbaki, Mohamed; Ziegler, David S.; Lindsay, Holly B.; Stucklin, Ana Guerreiro; Gerber, Nicolas; Vaske, Olena M.; Quinsey, Carolyn; Rood, Brian R.; Nazarian, Javad; Raabe, Eric; Jackson, Eric M.; Stapleton, Stacie; Lober, Robert M.; Kram, David E.; Koschmann, Carl; Storm, Phillip B.; Lulla, Rishi R.; Prados, Michael; Resnick, Adam C.; Waanders, Angela J. 分享 收藏
Cancer Informatics for Cancer Centers: Scientific Drivers for Informatics, Data Science, and Care in Pediatric, Adolescent, and Young Adult Cancer Kerlavage, Anthony R.; Kirchhoff, Anne C.; Auvil, Jaime M. Guidry; Sharpless, Norman E.; Davis, Kara L.; Reilly, Karlyne; Reaman, Gregory; Penberthy, Lynne; Deapen, Dennis; Hwang, Amie; Durbin, Eric B.; Gallotto, Sara L.; Aplenc, Richard; Volchenboum, Samuel L.; Heath, Allison P.; Aronow, Bruce J.; Zhang, Jinghui; Vaske, Olena; Alonzo, Todd A.; Nathan, Paul C.; Poynter, Jenny N.; Armstrong, Greg; Hahn, Erin E.; Wernli, Karen J.; Greene, Casey; DiGiovanna, Jack; Resnick, Adam C.; Shalley, Eve R.; Nadaf, Sorena; Kibbe, Warren A. 分享 收藏
OPENPBTA: AN OPEN PEDIATRIC BRAIN TUMOR ATLAS Shapiro, Joshua; Savonen, Candace; Bethell, Chante; Gaonkar, Krutika; Zhu, Yuankun; Brown, Miguel; Duong, Nhat; Rathi, Komal; Noureen, Nighat; Zhang, Bo; Ennis, Brian; Spielman, Stephanie; Farrow, Bailey; Van Kuren, Nicolas; Koganti, Tejaswi; Kannan, Shrivats; Raman, Pichai; Miller, Daniel; Jain, Payal; Guo, Yiran; Huang, Xiaoyan; Kraya, Adam; Heath, Allison; Koptyra, Mateusz; Wong, Jessica; Mason, Jennifer; Robbins, Shannon; Santi, Mariarita; Viaene, Angela; Waanders, Angela; Hanson, Derek; Scolaro, Laura; Xie, Hongbo; Zheng, Siyuan; Kline, Cassie; Lilly, Jena; Storm, Philip; Resnick, Adam; Rokita, Jo Lynne; Greene, Casey; Taroni, Jaclyn 分享 收藏
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The NCI Genomic Data Commons (vol 53, pg 257, 2021) Heath, Allison P.; Ferretti, Vincent; Agrawal, Stuti; An, Maksim; Angelakos, James C.; Arya, Renuka; Bajari, Rosita; Baqar, Bilal; Barnowski, Justin H. B.; Burt, Jeffrey; Catton, Ann; Chan, Brandon F.; Chu, Fay; Cullion, Kim; Davidsen, Tanja; Do, Phuong-My; Dompierre, Christian; Ferguson, Martin L.; Fitzsimons, Michael S.; Ford, Michael; Fukuma, Miyuki; Gaheen, Sharon; Ganji, Gajanan L.; Garcia, Tzintzuni I.; George, Sameera S.; Gerhard, Daniela S.; Gerthoffert, Francois; Gomez, Fauzi; Han, Kang; Hernandez, Kyle M.; Issac, Biju; Jackson, Richard; Jensen, Mark A.; Joshi, Sid; Kadam, Ajinkya; Khurana, Aishmit; Kim, Kyle M. J.; Kraft, Victoria E.; Li, Shenglai; Lichtenberg, Tara M.; Lodato, Janice; Lolla, Laxmi; Martinov, Plamen; Mazzone, Jeffrey A.; Miller, Daniel P.; Miller, Ian; Miller, Joshua S.; Miyauchi, Koji; Murphy, Mark W.; Nullet, Thomas; Ogwara, Rowland O.; Ortuno, Francisco M.; Pedrosa, Jesus; Pham, Phuong L.; Popov, Maxim Y.; Porter, James J.; Powell, Raymond; Rademacher, Karl; Reid, Colin P.; Rich, Samantha; Rogel, Bessie; Sahni, Himanso; Savage, Jeremiah H.; Schmitt, Kyle A.; Simmons, Trevar J.; Sislow, Joseph; Spring, Jonathan; Stein, Lincoln; Sullivan, Sean; Tang, Yajing; Thiagarajan, Mathangi; Troyer, Heather D.; Wang, Chang; Wang, Zhining; West, Bedford L.; Wilmer, Alex; Wilson, Shane; Wu, Kaman; Wysocki, William P.; Xiang, Linda; Yamada, Joseph T.; Yang, Liming; Yu, Christine; Yung, Christina K.; Zenklusen, Jean Claude; Zhang, Junjun; Zhang, Zhenyu; Zhao, Yuanheng; Zubair, Ariz; Staudt, Louis M.; Grossman, Robert L. 分享 收藏
Uniform genomic data analysis in the NCI Genomic Data Commons Zhang, Zhenyu; Hernandez, Kyle; Savage, Jeremiah; Li, Shenglai; Miller, Dan; Agrawal, Stuti; Ortuno, Francisco; Staudt, Louis M.; Heath, Allison; Grossman, Robert L. 分享 收藏
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