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A Pan-Cancer Patient-Derived Xenograft Histology Image Repository with Genomic and Pathologic Annotations Enables Deep Learning Analysis White, Brian S.; Woo, Xing Yi; Koc, Soner; Sheridan, Todd; Neuhauser, Steven B.; Wang, Shidan; Evrard, Yvonne A.; Chen, Li; Pour, Ali Foroughi; Landua, John D.; Mashl, R. Jay; Davies, Sherri R.; Fang, Bingliang; Rosa, Maria Gabriela; Evans, Kurt W.; Bailey, Matthew H.; Chen, Yeqing; Xiao, Min; Rubinstein, Jill C.; Sanderson, Brian J.; Lloyd, Michael W.; Domanskyi, Sergii; Dobrolecki, Lacey E.; Fujita, Maihi; Fujimoto, Junya; Xiao, Guanghua; Fields, Ryan C.; Mudd, Jacqueline L.; Xu, Xiaowei; Hollingshead, Melinda G.; Jiwani, Shahanawaz; Acevedo, Saul; Davis-Dusenbery, Brandi N.; Robinson, Peter N.; Moscow, Jeffrey A.; Doroshow, James H.; Mitsiades, Nicholas; Kaochar, Salma; Pan, Chong-xian; Carvajal-Carmona, Luis G.; Welm, Alana L.; Welm, Bryan E.; Govindan, Ramaswamy; Li, Shunqiang; Davies, Michael A.; Roth, Jack A.; Meric-Bernstam, Funda; Xie, Yang; Herlyn, Meenhard; Ding, Li; Lewis, Michael T.; Bult, Carol J.; Dean II, Dennis A.; Chuang, Jeffrey H. 分享 收藏
Comparative Genomic Analysis of Pancreatic Acinar Cell Carcinoma (PACC) and Pancreatic Ductal Adenocarcinoma (PDAC) Unveils New Actionable Genomic Aberrations in PACC Florou, Vaia; Elliott, Andrew; Bailey, Matthew H.; Stone, David; Affolter, Kajsa; Soares, Heloisa P.; Nevala-Plagemann, Chris; Scaife, Courtney; Walker, Phillip; Korn, W. Michael; Lou, Emil; Shroff, Rachna T.; Hosein, Peter J.; Garrido-Laguna, Ignacio 分享 收藏
A pan-cancer PDX histology image repository with genomic and pathological annotations for deep learning analysis White, Brian S.; Woo, Xing Yi; Koc, Soner; Sheridan, Todd; Neuhauser, Steven B.; Wang, Shidan; Evrard, Yvonne A.; Landua, John David; Mashl, R. Jay; Davies, Sherri R.; Fang, Bingliang; Raso, Maria Gabriela; Evans, Kurt W.; Bailey, Matthew H.; Chen, Yeqing; Xiao, Min; Rubinstein, Jill; Pour, Ali Foroughi; Dobrolecki, Lacey Elizabeth; Fujita, Maihi; Fujimoto, Junya; Xiao, Guanghua; Fields, Ryan C.; Mudd, Jacqueline L.; Xu, Xiaowei; Hollingshead, Melinda G.; Jiwani, Shahanawaz; Consortium, Pdxnet; Wallace, Tiffany A.; Moscow, Jeffrey A.; Doroshow, James H.; Mitsiades, Nicholas; Kaochar, Salma; Pan, Chong-Xian; Chen, Moon S.; Carvajal-Carmona, Luis G.; Welm, Alana L.; Welm, Bryan E.; Govindan, Ramaswamy; Li, Shunqiang; Davies, Michael A.; Roth, Jack A.; Meric-Bernstam, Funda; Xie, Yang; Herlyn, Meenhard; Ding, Li; Lewis, Michael T.; Bolt, Carol J.; Dean, Dennis A.; Chuang, Jeffrey H. 分享 收藏
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A human breast cancer-derived xenograft and organoid platform for drug discovery and precision oncology 用于药物发现和精确肿瘤学的人类乳腺癌衍生异种移植物和类器官平台 Guillen, Katrin P.; Fujita, Maihi; Butterfield, Andrew J.; Scherer, Sandra D.; Bailey, Matthew H.; Chu, Zhengtao; DeRose, Yoko S.; Zhao, Ling; Cortes-Sanchez, Emilio; Yang, Chieh-Hsiang; Toner, Jennifer; Wang, Guoying; Qiao, Yi; Huang, Xiaomeng; Greenland, Jeffery A.; Vahrenkamp, Jeffery M.; Lum, David H.; Factor, Rachel E.; Nelson, Edward W.; Matsen, Cindy B.; Poretta, Jane M.; Rosenthal, Regina; Beck, Anna C.; Buys, Saundra S.; Vaklavas, Christos; Ward, John H.; Jensen, Randy L.; Jones, Kevin B.; Li, Zheqi; Oesterreich, Steffi; Dobrolecki, Lacey E.; Pathi, Satya S.; Woo, Xing Yi; Berrett, Kristofer C.; Wadsworth, Mark E.; Chuang, Jeffrey H.; Lewis, Michael T.; Marth, Gabor T.; Gertz, Jason; Varley, Katherine E.; Welm, Bryan E.; Welm, Alana L. 分享 收藏
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Comprehensive characterization of 536 patient-derived xenograft models prioritizes candidatesfor targeted treatment 536患者来源的异种移植模型的综合表征优先考虑靶向治疗的候选者 Sun, Hua; Cao, Song; Mashl, R. Jay; Mo, Chia-Kuei; Zaccaria, Simone; Wendl, Michael C.; Davies, Sherri R.; Bailey, Matthew H.; Primeau, Tina M.; Hoog, Jeremy; Mudd, Jacqueline L.; Dean, Dennis A.; Patidar, Rajesh; Chen, Li; Wyczalkowski, Matthew A.; Jayasinghe, Reyka G.; Rodrigues, Fernanda Martins; Terekhanova, Nadezhda, V; Li, Yize; Lim, Kian-Huat; Wang-Gillam, Andrea; Van Tine, Brian A.; Ma, Cynthia X.; Aft, Rebecca; Fuh, Katherine C.; Schwarz, Julie K.; Zevallos, Jose P.; Puram, Sidharth, V; Dipersio, John F.; Consortium, Nci PDXNet; Davis-Dusenbery, Brandi; Ellis, Matthew J.; Lewis, Michael T.; Davies, Michael A.; Herlyn, Meenhard; Fang, Bingliang; Roth, Jack A.; Welm, Alana L.; Welm, Bryan E.; Meric-Bernstam, Funda; Chen, Feng; Fields, Ryan C.; Li, Shunqiang; Govindan, Ramaswamy; Doroshow, James H.; Moscow, Jeffrey A.; Evrard, Yvonne A.; Chuang, Jeffrey H.; Raphael, Benjamin J.; Ding, Li 分享 收藏
Conservation of copy number profiles during engraftment and passaging of patient-derived cancer xenografts (vol 53, pg 86, 2021) 在患者来源的癌症异种移植物的植入和传代过程中保留拷贝数谱 (第53卷，第86页，2021页) Woo, Xing Yi; Giordano, Jessica; Srivastava, Anuj; Zhao, Zi-Ming; Lloyd, Michael W.; de Bruijn, Roebi; Suh, Yun-Suhk; Patidar, Rajesh; Chen, Li; Scherer, Sandra; Bailey, Matthew H.; Yang, Chieh-Hsiang; Cortes-Sanchez, Emilio; Xi, Yuanxin; Wang, Jing; Wickramasinghe, Jayamanna; Kossenkov, Andrew V.; Rebecca, Vito W.; Sun, Hua; Mashl, R. Jay; Davies, Sherri R.; Jeon, Ryan; Frech, Christian; Randjelovic, Jelena; Rosains, Jacqueline; Galimi, Francesco; Bertotti, Andrea; Lafferty, Adam; O'Farrell, Alice C.; Modave, Elodie; Lambrechts, Diether; ter Brugge, Petra; Serra, Violeta; Marangoni, Elisabetta; El Botty, Rania; Kim, Hyunsoo; Kim, Jong-Il; Yang, Han-Kwang; Lee, Charles; Dean, Dennis A., II; Davis-Dusenbery, Brandi; Evrard, Yvonne A.; Doroshow, James H.; Welm, Alana L.; Welm, Bryan E.; Lewis, Michael T.; Fang, Bingliang; Roth, Jack A.; Meric-Bernstam, Funda; Herlyn, Meenhard; Davies, Michael A.; Ding, Li; Li, Shunqiang; Govindan, Ramaswamy; Isella, Claudio; Moscow, Jeffrey A.; Trusolino, Livio; Byrne, Annette T.; Jonkers, Jos; Bult, Carol J.; Medico, Enzo; Chuang, Jeffrey H. 分享 收藏
Conservation of copy number profiles during engraftment and passaging of patient-derived cancer xenografts 在患者来源的癌症异种移植物的植入和传代过程中保留拷贝数谱 Woo, Xing Yi; Giordano, Jessica; Srivastava, Anuj; Zhao, Zi-Ming; Lloyd, Michael W.; de Bruijn, Roebi; Suh, Yun-Suhk; Patidar, Rajesh; Chen, Li; Scherer, Sandra; Bailey, Matthew H.; Yang, Chieh-Hsiang; Cortes-Sanchez, Emilio; Xi, Yuanxin; Wang, Jing; Wickramasinghe, Jayamanna; Kossenkov, Andrew V.; Rebecca, Vito W.; Sun, Hua; Mashl, R. Jay; Davies, Sherri R.; Jeon, Ryan; Frech, Christian; Randjelovic, Jelena; Rosains, Jacqueline; Galimi, Francesco; Bertotti, Andrea; Lafferty, Adam; O'Farrell, Alice C.; Modave, Elodie; Lambrechts, Diether; ter Brugge, Petra; Serra, Violeta; Marangoni, Elisabetta; El Botty, Rania; Kim, Hyunsoo; Kim, Jong-Il; Yang, Han-Kwang; Lee, Charles; Dean, Dennis A., II; Davis-Dusenbery, Brandi; Evrard, Yvonne A.; Doroshow, James H.; Welm, Alana L.; Welm, Bryan E.; Lewis, Michael T.; Fang, Bingliang; Roth, Jack A.; Meric-Bernstam, Funda; Herlyn, Meenhard; Davies, Michael A.; Ding, Li; Li, Shunqiang; Govindan, Ramaswamy; Isella, Claudio; Moscow, Jeffrey A.; Trusolino, Livio; Byrne, Annette T.; Jonkers, Jos; Bult, Carol J.; Medico, Enzo; Chuang, Jeffrey H. 分享 收藏
Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples (vol 11, 4748, 2020) Bailey, Matthew H.; Meyerson, William U.; Dursi, Lewis Jonathan; Wang, Liang-Bo; Dong, Guanlan; Liang, Wen-Wei; Weerasinghe, Amila; Li, Shantao; Li, Yize; Kelso, Sean; Saksena, Gordon; Ellrott, Kyle; Wendl, Michael C.; Wheeler, David A.; Getz, Gad; Simpson, Jared T.; Gerstein, Mark B.; Ding, Li 分享 收藏
Discovery of driver non-coding splice-site-creating mutations in cancer Cao, Song; Zhou, Daniel Cui; Oh, Clara; Jayasinghe, Reyka G.; Zhao, Yanyan; Yoon, Christopher J.; Wyczalkowski, Matthew A.; Bailey, Matthew H.; Tsou, Terrence; Gao, Qingsong; Malone, Andrew; Reynolds, Sheila; Shmulevich, Ilya; Wendl, Michael C.; Chen, Feng; Ding, Li 分享 收藏
Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples 746癌症样本中全外显子组和基因组突变的回顾性评估 Bailey, Matthew H.; Meyerson, William U.; Dursi, Lewis Jonathan; Wang, Liang-Bo; Dong, Guanlan; Liang, Wen-Wei; Weerasinghe, Amila; Li, Shantao; Li, Yize; Kelso, Sean; Saksena, Gordon; Ellrott, Kyle; Wendl, Michael C.; Wheeler, David A.; Getz, Gad; Simpson, Jared T.; Gerstein, Mark B.; Ding, Li 分享 收藏
Interpreting pathways to discover cancer driver genes with Moonlight Colaprico, Antonio; Olsen, Catharina; Bailey, Matthew H.; Odom, Gabriel J.; Terkelsen, Thilde; Silva, Tiago C.; Olsen, Andre, V; Cantini, Laura; Zinovyev, Andrei; Barillot, Emmanuel; Noushmehr, Houtan; Bertoli, Gloria; Castiglioni, Isabella; Cava, Claudia; Bontempi, Gianluca; Chen, Xi Steven; Papaleo, Elena 分享 收藏
Before and After: Comparison of Legacy and Harmonized TCGA Genomic Data Commons' Data Gao, Galen F.; Parker, Joel S.; Reynolds, Sheila M.; Silva, Tiago C.; Wang, Liang-Bo; Zhou, Wanding; Akbani, Rehan; Bailey, Matthew; Balu, Saianand; Berman, Benjamin P.; Brooks, Denise; Chen, Hu; Cherniack, Andrew D.; Demchok, John A.; Ding, Li; Felau, Ina; Gaheen, Sharon; Gerhard, Daniela S.; Heiman, David, I; Hernandez, Kyle M.; Hoadley, Katherine A.; Jayasinghe, Reyka; Kemal, Anab; Knijnenburg, Theo A.; Laird, Peter W.; Mensah, Michael K. A.; Mungall, Andrew J.; Robertson, A. Gordon; Shen, Hui; Tarnuzzer, Roy; Wang, Zhining; Wyczalkowski, Matthew; Yang, Liming; Zenklusen, Jean C.; Zhang, Zhenyu; Liang, Han; Noble, Michael S. 分享 收藏
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Integrative omics analyses broaden treatment targets in human cancer Sengupta, Sohini; Sun, Sam Q.; Huang, Kuan-lin; Oh, Clara; Bailey, Matthew H.; Varghese, Rajees; Wyczalkowski, Matthew A.; Ning, Jie; Tripathi, Piyush; McMichael, Joshua F.; Johnson, Kimberly J.; Kandoth, Cyriac; Welch, John; Ma, Cynthia; Wendl, Michael C.; Payne, Samuel H.; Fenyo, David; Townsend, Reid R.; Dipersio, John F.; Chen, Feng; Ding, Li 分享 收藏
Effects of germline and somatic mutations on protein expression in tumor and adjacent normal tissues in breast, ovarian, and colorectal tumors Bailey, Matthew H.; Zhou, Daniel C.; Wu, Yige; Wyczalkowski, Matthew A.; Wang, Liang-Bo; Rodrigues, Fernanda Martins; Mills, Gordon; Payne, Samuel; Fenyo, David; Ding, Li 分享 收藏
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