Chongle Pan - Publications, H-index & Citations

Chongle Pan

University of North Texas

43H指数

184论文数

5.7K被引数

收录论文 60

发表时间

Human donor liver viability evaluation with polarization-sensitive optical coherence tomography 利用偏振敏感光学相干层析技术评估人供肝活力

Science Translational Medicine

IF14.6

2026-06-24

PREAI

Feng Yan; Qinghao Zhang; Bornface M. Mutembei; Ke Zhang; Yan Cui; Ronghao Liu; Junyuan Liu; Chen Wang; Zaid A. Alhajeri; Kaustubh Pandit; Fan Zhang; Zhongxin Yu; Kar-Ming Fung; Shaima N. Elgenaid; Paige Parrack; Walid Ali; Clint A. Hostetler; Ashley N. Milam; Bradon Nave; Ron Squires; Paulo N. Martins; Narendra R. Battula; Steven Potter; Yu Chen; Chongle Pan; Qinggong Tang

SEMQuant: A Computational Platform for Accurate and Comprehensive Quantitative Mewtaproteomics Analysis SEMQuant：一个用于准确和全面定量微生物蛋白质组学分析的计算机平台

Journal of Computer Science and Technology

IF1.3

2026-05-01

PREAI

Zhang, Bailu; Feng, Shichao; Xiong, Yi; Pan, Chongle; Guo, Xuan

Benchmarking interpretability of deep learning for predictive genomics: Recall, precision, and variability of feature attribution 深度学习在预测基因组学中的可解释性基准测试：特征归因的召回率、精确率和变异性

PLOS COMPUTATIONAL BIOLOGY

IF3.6

2025-12-01

PREAI

Reynolds, Justin; Pan, Chongle

Aerith: Visualization and Annotation of Isotopic Enrichment Patterns of Peptides and Metabolites with Stable Isotope Labeling from Proteomics and Metabolomics Aerith: 蛋白质组学和代谢组学中稳定同位素标记的肽段和代谢物同位素富集模式的可视化和注释

Analytical Chemistry

IF6.7

2025-10-28

OAAI

Yi Xiong; Ryan S. Mueller; Shichao Feng; Xuan Guo; Chongle Pan

Enhancing peptide identification in metaproteomics through curriculum learning in deep learning 通过深度学习中的课程学习增强元蛋白质组学的肽段鉴定

Nature Communications

IF15.7

2025-10-08

OAAI

Shichao Feng; Bailu Zhang; Huan Wang; Yi Xiong; Athena Tian; Xiaohui Yuan; Chongle Pan; Xuan Guo

Integration of nested cross-validation, automated hyperparameter optimization, high-performance computing to reduce and quantify the variance of test performance estimation of deep learning models 嵌套交叉验证、自动化超参数优化和高性能计算的集成，以减少和量化深度学习模型测试性能估计的方差。

Computer Methods and Programs in Biomedicine

IF4.8

2025-09-10

PREAI

Paul Calle; Averi Bates; Justin C. Reynolds; Yunlong Liu; Haoyang Cui; Sinaro Ly; Chen Wang; Qinghao Zhang; Alberto J. de Armendi; Shashank S. Shettar; Kar-Ming Fu; Qinggong Tang; Chongle Pan

Absence of biofilm adhesin proteins changes surface attachment and cell strategy for Desulfovibrio vulgaris Hildenborough 缺乏生物膜粘附素蛋白改变了Desulfovibrio vulgaris Hildenborough的表面附着和细胞策略

JOURNAL OF BACTERIOLOGY

IF3

2025-01-31

OAAI

Pickens, C. Pete; Wang, Dongyu; Pan, Chongle; De Leon, Kara B.

Octascope: A Lightweight Pre-Trained Model for Optical Coherence Tomography Octascope：一种轻量级光学相干层析成像预训练模型

IEEE Access

IF3.6

2025-01-01

OAAI

Haoyang Cui; Chen Wang; Paul Calle; Yunlong Liu; Qinghao Zhang; Sinaro Ly; Justin Reynolds; Feng Yan; Ke Zhang; Ronghao Liu; Junyuan Liu; Kar-Ming Fung; Zhongxin Yu; Ajay Jain; Qinggong Tang; Chongle Pan

AtDGCR14L contributes to salt-stress tolerance via regulating pre-mRNA splicing in Arabidopsis

PLANT JOURNAL

IF5.7

2024-11-10

OAAI

Xie, Meng; Tadesse, Dimiru; Zhang, Jin; Yao, Tao; Zhang, Li; Jawdy, Sara S.; Devireddy, Amith; Zheng, Kaijie; Smith, Emily B.; Morrell-Falvey, Jennifer; Pan, Chongle; Chen, Feng; Tuskan, Gerald A.; Muchero, Wellington; Chen, Jin-Gui

Proteomic stable isotope probing with an upgraded Sipros algorithm for improved identification and quantification of isotopically labeled proteins

MICROBIOME

IF12.7

2024-08-08

OAAI

Xiong, Yi; Mueller, Ryan S.; Feng, Shichao; Guo, Xuan; Pan, Chongle

Metaproteomics-informed stoichiometric modeling reveals the responses of wetland microbial communities to oxygen and sulfate exposure

NPJ BIOFILMS AND MICROBIOMES

IF9.2

2024-07-03

OAAI

Wang, Dongyu; Candry, Pieter; Hunt, Kristopher A.; Flinkstrom, Zachary; Shi, Zheng; Liu, Yunlong; Wofford, Neil Q.; Mcinerney, Michael J.; Tanner, Ralph S.; De Leon, Kara B.; Zhou, Jizhong; Winkler, Mari-Karoliina H.; Stahl, David A.; Pan, Chongle

Persistent Biofluid Small-Molecule Alterations Induced by Trypanosoma cruzi Infection Are Not Restored by Parasite Elimination

ACS INFECTIOUS DISEASES

IF3.8

2023-10-26

OAAI

Dean, Danya A.; Roach, Jarrod; vonBargen, Rebecca Ulrich; Xiong, Yi; Kane, Shelley S.; Klechka, London; Wheeler, Kate; Sandoval, Michael Jimenez; Lesani, Mahbobeh; Hossain, Ekram; Katemauswa, Mitchelle; Schaefer, Miranda; Harris, Morgan; Barron, Sayre; Liu, Zongyuan; Pan, Chongle; McCall, Laura-Isobel

Polyethylene Degradation by a Rhodococcous Strain Isolated from Naturally Weathered Plastic Waste Enrichment

ENVIRONMENTAL SCIENCE & TECHNOLOGY

IF11.3

2023-09-08

OAAI

Tao, Xuanyu; Ouyang, Huanrong; Zhou, Aifen; Wang, Dongyu; Matlock, Hagan; Morgan, Josiah S.; Ren, Abigail T.; Mu, Dashuai; Pan, Chongle; Zhu, Xuejun; Han, Arum; Zhou, Jizhong

Cross-Feedings, Competition, and Positive and Negative Synergies in a Four-Species Synthetic Community for Anaerobic Degradation of Cellulose to Methane

MBIO

IF4.7

2023-04-25

OAAI

Wang, Dongyu; Hunt, Kristopher A.; Candry, Pieter; Tao, Xuanyu; Wofford, Neil Q.; Zhou, Jizhong; McInerney, Michael J.; Stahl, David A.; Tanner, Ralph S.; Zhou, Aifen; Winkler, Mari; Pan, Chongle

Bayesian inference for survival prediction of childhood Leukemia

COMPUTERS IN BIOLOGY AND MEDICINE

IF6.3

2023-04-01

OAAI

Cui, Yuning; Li, Yifu; Pan, Chongle; Brownc, Stephanie R.; Gallant, Rachel E.; Zhu, Rui

Functional and structural diversification of incomplete phosphotransferase system in cellulose-degrading clostridia

ISME JOURNAL

IF10

2023-03-10

PREAI

Xu, Tao; Tao, Xuanyu; He, Hongxi; Kempher, Megan L.; Zhang, Siping; Liu, Xiaochun; Wang, Jun; Wang, Dongyu; Ning, Daliang; Pan, Chongle; Ge, Honghua; Zhang, Nannan; He, Yong-Xing; Zhou, Jizhong

Islet autoantibody seroconversion in type-1 diabetes is associated with metagenome-assembled genomes in infant gut microbiomes

NATURE COMMUNICATIONS

IF15.7

2022-06-21

OAAI

Zhang, Li; Jonscher, Karen R.; Zhang, Zuyuan; Xiong, Yi; Mueller, Ryan S.; Friedman, Jacob E.; Pan, Chongle

Epidural anesthesia needle guidance by forward-view endoscopic optical coherence tomography and deep learning

SCIENTIFIC REPORTS

IF3.9

2022-05-31

OAAI

Wang, Chen; Calle, Paul; Reynolds, Justin C.; Ton, Sam; Yan, Feng; Donaldson, Anthony M.; Ladymon, Avery D.; Roberts, Pamela R.; de Armendi, Alberto J.; Fung, Kar-ming; Shettar, Shashank S.; Pan, Chongle; Tang, Qinggong

Genomic Features and Pervasive Negative Selection in Rhodanobacter Strains Isolated from Nitrate and Heavy Metal Contaminated Aquifer 从硝酸盐和重金属污染的含水层中分离出的红细菌菌株的基因组特征和普遍的负选择

MICROBIOLOGY SPECTRUM

IF3.8

2022-02-23

OAAI

Peng, Mu; Wang, Dongyu; Lui, Lauren M.; Nielsen, Torben; Tian, Renmao; Kempher, Megan L.; Tao, Xuanyu; Pan, Chongle; Chakraborty, Romy; Deutschbauer, Adam M.; Thorgersen, Michael P.; Adams, Michael W. W.; Fields, Matthew W.; Hazen, Terry C.; Arkin, Adam P.; Zhou, Aifen; Zhou, Jizhong

LINA: A Linearizing Neural Network Architecture for Accurate First-Order and Second-Order Interpretations

IEEE ACCESS

IF3.6

2022-01-01

OAAI

Badre, Adrien; Pan, Chongle

研究方向