Diogo M. Ribeiro - Publications, H-index & Citations

Diogo M. Ribeiro

department of computational biology

18H指数

40论文数

1.8K被引数

收录论文 22

发表时间

Noncoding rare variant associations with blood traits in 166,740 UK Biobank genomes 非编码稀有变异与血液性状在166,740个UK Biobank基因组中的关联

Nature Genetics

IF0

2025-08-06

OAAI

Diogo M. Ribeiro; Robin J. Hofmeister; Simone Rubinacci; Olivier Delaneau

Structural and functional brain correlates of suicidal ideation and behaviors in depression: A scoping review of MRI studies

PROGRESS IN NEURO-PSYCHOPHARMACOLOGY & BIOLOGICAL PSYCHIATRY

IF3.9

2023-08-01

PREAI

Vieira, Rita; Faria, Ana Raquel; Ribeiro, Diogo; Pico-Perez, Maria; Bessa, Joao M.

Multimodal single cell analysis infers widespread enhancer co-activity in a lymphoblastoid cell line 多模式单细胞分析推断淋巴母细胞系中的广泛增强子共活性

COMMUNICATIONS BIOLOGY

IF5.1

2023-05-26

OAAI

Ziyani, Chaymae; Delaneau, Olivier; Ribeiro, Diogo M.

Genetic variation in cis-regulatory domains suggests cell type-specific regulatory mechanisms in immunity 顺式调节域的遗传变异表明免疫中的细胞类型特异性调节机制

COMMUNICATIONS BIOLOGY

IF5.1

2023-03-28

OAAI

Avalos, Diana; Rey, Guillaume; Ribeiro, Diogo M.; Ramisch, Anna; Dermitzakis, Emmanouil T.; Delaneau, Olivier

Parent-of-Origin inference for biobanks 生物库的起源父推断

NATURE COMMUNICATIONS

IF15.7

2022-11-05

OAAI

Hofmeister, Robin J.; Rubinacci, Simone; Ribeiro, Diogo M.; Buil, Alfonso; Kutalik, Zoltan; Delaneau, Olivier

Shared regulation and functional relevance of local gene co-expression revealed by single cell analysis 单细胞分析揭示局部基因共表达的共享调控和功能相关性

COMMUNICATIONS BIOLOGY

IF5.1

2022-08-26

OAAI

Ribeiro, Diogo M.; Ziyani, Chaymae; Delaneau, Olivier

MiR-277/4989 regulate transcriptional landscape during juvenile to adult transition in the parasitic helminth Schistosoma mansoni (vol 11, e0005559, 2017)

PLOS NEGLECTED TROPICAL DISEASES

IF3.4

2022-06-06

OAAI

Protasio, Anna V.; van Dongen, Stijn; Collins, Julie; Quintais, Leonor; Ribeiro, Diogo M.; Sessler, Florian; Hunt, Martin; Rinaldi, Gabriel; Collins, James J.; Enright, Anton J.; Berriman, Matthew

Multidimensional chromatin profiling of zebrafish pancreas to uncover and investigate disease-relevant enhancers

NATURE COMMUNICATIONS

IF15.7

2022-04-11

OAAI

Bordeira-Carrico, Renata; Teixeira, Joana; Duque, Marta; Galhardo, Mafalda; Ribeiro, Diogo; Acemel, Rafael D.; Firbas, Panos N.; Tena, Juan J.; Eufrasio, Ana; Marques, Joana; Ferreira, Fabio J.; Freitas, Telmo; Carneiro, Fatima; Gomez-Skarmeta, Jose Luis; Bessa, Jose

Differentially expressed genes reflect disease-induced rather than disease-causing changes in the transcriptome 差异表达的基因反映了转录组中疾病诱导的而不是疾病引起的变化

NATURE COMMUNICATIONS

IF15.7

2021-09-24

OAAI

Porcu, Eleonora; Sadler, Marie C.; Lepik, Kaido; Auwerx, Chiara; Wood, Andrew R.; Weihs, Antoine; Sleiman, Maroun S. Bou; Ribeiro, Diogo M.; Bandinelli, Stefania; Tanaka, Toshiko; Nauck, Matthias; Volker, Uwe; Delaneau, Olivier; Metspalu, Andres; Teumer, Alexander; Frayling, Timothy; Santoni, Federico A.; Reymond, Alexandre; Kutalik, Zoltan

The molecular basis, genetic control and pleiotropic effects of local gene co-expression 局部基因共表达的分子基础，遗传控制和多效性

NATURE COMMUNICATIONS

IF15.7

2021-08-10

OAAI

Ribeiro, Diogo M.; Rubinacci, Simone; Ramisch, Anna; Hofmeister, Robin J.; Dermitzakis, Emmanouil T.; Delaneau, Olivier

Efficient phasing and imputation of low-coverage sequencing data using large reference panels (vol 53, pg 120, 2021)使用大型参考面板对低覆盖率测序数据进行有效的定相和归集 (第53卷，120页，2021页)

NATURE GENETICS

IF31.8

2021-01-20

OAAI

Rubinacci, Simone; Ribeiro, Diogo M.; Hofmeister, Robin J.; Delaneau, Olivier

Efficient phasing and imputation of low-coverage sequencing data using large reference panels 使用大型参考面板对低覆盖率测序数据进行有效的分阶段和归约

NATURE GENETICS

IF31.8

2021-01-07

169

OAAI

Rubinacci, Simone; Ribeiro, Diogo M.; Hofmeister, Robin J.; Delaneau, Olivier

The role of 3′UTR-protein complexes in the regulation of protein multifunctionality and subcellular localization 3 ′ UTR-蛋白复合物在调节蛋白多功能性和亚细胞定位中的作用

NUCLEIC ACIDS RESEARCH

IF13.1

2020-06-02

OAAI

Ribeiro, Diogo M.; Prod'homme, Alexis; Teixeira, Adrien; Zanzoni, Andreas; Brun, Christine

Understanding protein multifunctionality: from short linear motifs to cellular functions 了解蛋白质多功能性: 从短线性基序到细胞功能

CELLULAR AND MOLECULAR LIFE SCIENCES

IF6.2

2019-08-20

OAAI

Zanzoni, Andreas; Ribeiro, Diogo M.; Brun, Christine

Post-transcriptional regulatory patterns revealed by protein-RNA interactions 蛋白质-RNA相互作用揭示的转录后调控模式

SCIENTIFIC REPORTS

IF3.9

2019-03-13

OAAI

Zanzoni, Andreas; Spinelli, Lionel; Ribeiro, Diogo M.; Tartaglia, Gian Gaetano; Brun, Christine

Comparative genomics of the major parasitic worms 主要寄生虫的比较基因组学

NATURE GENETICS

IF31.8

2018-11-05

294

OAAI

Coghlan, Avril; Tyagi, Rahul; Cotton, James A.; Holroyd, Nancy; Rosa, Bruce A.; Tsai, Isheng Jason; Laetsch, Dominik R.; Beech, Robin N.; Day, Tim A.; Hallsworth-Pepin, Kymberlie; Ke, Huei-Mien; Kuo, Tzu-Hao; Lee, Tracy J.; Martin, John; Maizels, Rick M.; Mutowo, Prudence; Ozersky, Philip; Parkinson, John; Reid, Adam J.; Rawlings, Neil D.; Ribeiro, Diogo M.; Swapna, Lakshmipuram Seshadri; Stanley, Eleanor; Taylor, David W.; Wheeler, Nicolas J.; Zamanian, Mostafa; Zhang, Xu; Allan, Fiona; Allen, Judith E.; Asano, Kazuhito; Babayan, Simon A.; Bah, Germanus; Beasley, Helen; Bennett, Hayley M.; Bisset, Stewart A.; Castillo, Estela; Cook, Joseph; Cooper, Philip J.; Cruz-Bustos, Teresa; Cuellar, Carmen; Devaney, Eileen; Doyle, Stephen R.; Eberhard, Mark L.; Emery, Aidan; Eom, Keeseon S.; Gilleard, John S.; Gordon, Daria; Harcus, Yvonne; Harsha, Bhavana; Hawdon, John M.; Hill, Dolores E.; Hodgkinson, Jane; Horak, Petr; Howe, Kevin L.; Huckvale, Thomas; Kalbe, Martin; Kaur, Gaganjot; Kikuchi, Taisei; Koutsovoulos, Georgios; Kumar, Sujai; Leach, Andrew R.; Lomax, Jane; Makepeace, Benjamin; Matthews, Jacqueline B.; Muro, Antonio; O'Boyle, Noel Michael; Olson, Peter D.; Osuna, Antonio; Partono, Felix; Pfarr, Kenneth; Rinaldi, Gabriel; Foronda, Pilar; Rollinson, David; Gomez Samblas, Mercedes; Sato, Hiroshi; Schnyder, Manuela; Scholz, Tomas; Shafie, Myriam; Tanya, Vincent N.; Toledo, Rafael; Tracey, Alan; Urban, Joseph F.; Wang, Lian-Chen; Zarlenga, Dante; Blaxter, Mark L.; Mitreva, Makedonka; Berriman, Matthew

MoonDB 2.0: an updated database of extreme multifunctional and moonlighting proteins MoonDB 2.0: 极端多功能和月光蛋白质的更新数据库

NUCLEIC ACIDS RESEARCH

IF13.1

2018-10-29

OAAI

Ribeiro, Diogo M.; Briere, Galadriel; Bely, Benoit; Spinelli, Lionel; Brun, Christine

Protein complex scaffolding predicted as a prevalent function of long non-coding RNAs 蛋白质复合物支架被预测为长链非编码rna的普遍功能

NUCLEIC ACIDS RESEARCH

IF13.1

2017-11-20

OAAI

Ribeiro, Diogo M.; Zanzoni, Andreas; Cipriano, Andrea; Delli Ponti, Riccardo; Spinelli, Lionel; Ballarino, Monica; Bozzoni, Irene; Gaetano Tartaglia, Gian; Brun, Christine

MiR-277/4989 regulate transcriptional landscape during juvenile to adult transition in the parasitic helminth Schistosoma mansoni MiR-277/4989调节寄生蠕虫曼氏血吸虫在少年到成年过渡期间的转录景观

PLOS NEGLECTED TROPICAL DISEASES

IF3.4

2017-05-23

OAAI

Protasio, Anna V.; van Dongen, Stijn; Collins, Julie; Quintais, Leonor; Ribeiro, Diogo M.; Sessler, Florian; Hunt, Martin; Rinaldi, Gabriel; Collins, James J.; Enright, Anton J.; Berriman, Matthew

The genomic basis of parasitism in the Strongyloides clade of nematodes 线虫类圆线虫进化枝中寄生的基因组基础

NATURE GENETICS

IF31.8

2016-02-01

193

OAAI

Hunt, Vicky L.; Tsai, Isheng J.; Coghlan, Avril; Reid, Adam J.; Holroyd, Nancy; Foth, Bernardo J.; Tracey', Alan; Cotton', James A.; Stanley, Eleanor J.; Beasley, Helen; Bennett, Hayley M.; Brooks, Karen; Harsha, Bhavana; Kajitani, Rei; Kulkarni, Arpita; Harbecke, Dorothee; Nagayasu, Eiji; Nichol, Sarah; Ogura, Yoshitoshi; Quail, Michael A.; Randle, Nadine; Xia, Dong; Brattig, Norbert W.; Soblik, Hanns; Ribeiro, Diogo M.; Sanchez-Flores, Alejandro; Hayashi, Tetsuya; Itoh, Takehiko; Denver, Dee R.; Grant, Warwick; Stoltzfus, Jonathan D.; Lok, James B.; Murayama, Haruhiko; Wastling, Jonathan; Streit, Adrian; Kikuchi, Taisei; Viney, Mark; Berriman, Matthew

研究方向