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收藏Most large structural variants in cancer genomes can be detected without long reads
Choo, Zi-Ning; Behr, Julie M.; Deshpande, Aditya; Hadi, Kevin; Yao, Xiaotong; Tian, Huasong; Takai, Kaori; Zakusilo, George; Rosiene, Joel; Paula, Arnaud Da Cruz; Weigelt, Britta; Setton, Jeremy; Riaz, Nadeem; Powell, Simon N.; Busam, Klaus; Shoushtari, Alexander N.; Ariyan, Charlotte; Reis-Filho, Jorge; de Lange, Titia; Imielinski, Marcin 分享 收藏 Somatic whole genome dynamics of precancer in Barrett's esophagus reveals features associated with disease progressionPaulson, Thomas G.; Galipeau, Patricia C.; Oman, Kenji M.; Sanchez, Carissa A.; Kuhner, Mary K.; Smith, Lucian P.; Hadi, Kevin; Shah, Minita; Arora, Kanika; Shelton, Jennifer; Johnson, Molly; Corvelo, Andre; Maley, Carlo C.; Yao, Xiaotong; Sanghvi, Rashesh; Venturini, Elisa; Emde, Anne-Katrin; Hubert, Benjamin; Imielinski, Marcin; Robine, Nicolas; Reid, Brian J.; Li, Xiaohong 分享 收藏 Pathognomonic long molecule footprints of backup repair pathways in homologous recombination deficient cancersSetton, Jeremy; Hadi, Kevin; Tian, Huasong; Paula, Arnaud Da Cruz; Rosiene, Joel; Choo, Zi-Ning; Behr, Julie; Yao, Xiaotong; Elemento, Olivier; Weigelt, Britta; Riaz, Nadeem; Reis-Filho, Jorge S.; Imielinski, Marcin; Powell, Simon N. 分享 收藏 分享 收藏 Integrated mutational landscape analysis of uterine leiomyosarcomasChoi, Jungmin; Manzano, Aranzazu; Dong, Weilai; Bellone, Stefania; Bonazzoli, Elena; Zammataro, Luca; Yao, Xiaotong; Deshpande, Aditya; Zaidi, Samir; Guglielmi, Adele; Gnutti, Barbara; Nagarkatti, Nupur; Tymon-Rosario, Joan R.; Harold, Justin; Mauricio, Dennis; Zeybek, Burak; Menderes, Gulden; Altwerger, Gary; Jeong, Kyungjo; Zhao, Siming; Buza, Natalia; Hui, Pei; Ravaggi, Antonella; Bignotti, Eliana; Romani, Chiara; Todeschini, Paola; Zanotti, Laura; Odicino, Franco; Pecorelli, Sergio; Ardighieri, Laura; Bilguvar, Kaya; Quick, Charles M.; Silasi, Dan-Arin; Huang, Gloria S.; Andikyan, Vaagn; Clark, Mitchell; Ratner, Elena; Azodi, Masoud; Imielinski, Marcin; Schwartz, Peter E.; Alexandrov, Ludmil B.; Lifton, Richard P.; Schlessinger, Joseph; Santin, Alessandro D. 分享 收藏 Whole-genome characterization of lung adenocarcinomas lacking the RTK/RAS/RAF pathwayCarrot-Zhang, Jian; Yao, Xiaotong; Devarakonda, Siddhartha; Deshpande, Aditya; Damrauer, Jeffrey S.; Silva, Tiago Chedraoui; Wong, Christopher K.; Choi, Hyo Young; Felau, Ina; Robertson, A. Gordon; Castro, Mauro A. A.; Bao, Lisui; Rheinbay, Esther; Liu, Eric Minwei; Trieu, Tuan; Haan, David; Yau, Christina; Hinoue, Toshinori; Liu, Yuexin; Shapira, Ofer; Kumar, Kiran; Mungall, Karen L.; Zhang, Hailei; Lee, Jake June-Koo; Berger, Ashton; Gao, Galen F.; Zhitomirsky, Binyamin; Liang, Wen-Wei; Zhou, Meng; Moorthi, Sitapriya; Berger, Alice H.; Collisson, Eric A.; Zody, Michael C.; Ding, Li; Cherniack, Andrew D.; Getz, Gad; Elemento, Olivier; Benz, Christopher C.; Stuart, Josh; Zenklusen, J. C.; Beroukhim, Rameen; Chang, Jason C.; Campbell, Joshua D.; Hayes, D. Neil; Yang, Lixing; Laird, Peter W.; Weinstein, John N.; Kwiatkowski, David J.; Tsao, Ming S.; Travis, William D.; Khurana, Ekta; Berman, Benjamin P.; Hoadley, Katherine A.; Robine, Nicolas; Meyerson, Matthew; Govindan, Ramaswamy; Imielinski, Marcin 分享 收藏 Whole-genome characterization of lung adenocarcinomas lacking alterations in the RTK/RAS/RAF pathway (vol 34, 108707-1.e1, 2021)Carrot-Zhang, Jian; Yao, Xiaotong; Devarakonda, Siddhartha; Deshpande, Aditya; Damrauer, Jeffrey S.; Silva, Tiago Chedraoui; Wong, Christopher K.; Choi, Hyo Young; Felau, Ina; Robertson, A. Gordon; Castro, Mauro A. A.; Bao, Lisui; Rheinbay, Esther; Liu, Eric Minwei; Trieu, Tuan; Haan, David; Yau, Christina; Hinoue, Toshinori; Liu, Yuexin; Shapira, Ofer; Kumar, Kiran; Mungall, Karen L.; Zhang, Hailei; Lee, Jake June-Koo; Berger, Ashton; Gao, Galen F.; Zhitomirsky, Binyamin; Liang, Wen-Wei; Zhou, Meng; Moorthi, Sitapriya; Berger, Alice H.; Collisson, Eric A.; Zody, Michael C.; Ding, Li; Cherniack, Andrew D.; Getz, Gad; Elemento, Olivier; Benz, Christopher C.; Stuart, Josh; Zenklusen, J. C.; Beroukhim, Rameen; Chang, Jason C.; Campbell, Joshua D.; Hayes, D. Neil; Yang, Lixing; Laird, Peter W.; Weinstein, John N.; Kwiatkowski, David J.; Tsao, Ming S.; Travis, William D.; Khurana, Ekta; Berman, Benjamin P.; Hoadley, Katherine A.; Robine, Nicolas; Meyerson, Matthew; Govindan, Ramaswamy; Imielinski, Marcin 分享 收藏 Whole-genome characterization of lung adenocarcinomas lacking alterations in RTK/RAS/RAF/MAPK pathwayCarrot-Zhang, Jian; Devarakonda, Siddhartha; Robine, Nicolas; Yao, Xiaotong; Silva, Tiago C.; Damrauer, Jeff; Deshpande, Aditya; Tsao, Ming-Sound; Yao, Christina; Wong, Chris; Bao, Lisui; Choi, Hyo Young; Felau, Ina; Zenklusen, Jean C.; Robertson, Gordon; Trieua, Tuan; Liang, Wei-Wei; Zhou, Meng; Rheinbay, Esther; Hayes, Neil; Khurana, Ekta; Ding, Li; Laird, Peter; Elemento, Olivier; Weinstein, John; Kwiatkowski, David; Benz, Chris; Stuart, Josh; Yang, Lixing; Castro, Mauro; Travis, William; Hoadley, Katherine; Berman, Ben; Meyerson, Matthew; Govindan, Ramaswamy; Imielinski, Marcin 分享 收藏 Pan-cancer analysis of whole genomes identifies driver rearrangements promoted by LINE-1 retrotransposition全基因组的泛癌症分析确定了由LINE-1反转录转座促进的驱动程序重排Rodriguez-Martin, Bernardo; Alvarez, Eva G.; Baez-Ortega, Adrian; Zamora, Jorge; Supek, Fran; Demeulemeester, Jonas; Santamarina, Martin; Ju, Young Seok; Temes, Javier; Garcia-Souto, Daniel; Detering, Harald; Li, Yilong; Rodriguez-Castro, Jorge; Dueso-Barroso, Ana; Bruzos, Alicia L.; Dentro, Stefan C.; Blanco, Miguel G.; Contino, Gianmarco; Ardeljan, Daniel; Tojo, Marta; Roberts, Nicola D.; Zumalave, Sonia; Edwards, Paul A. W.; Weischenfeldt, Joachim; Puiggros, Montserrat; Chong, Zechen; Chen, Ken; Lee, Eunjung Alice; Wala, Jeremiah A.; Raine, Keiran; Butler, Adam; Waszak, Sebastian M.; Navarro, Fabio C. P.; Schumacher, Steven E.; Monlong, Jean; Maura, Francesco; Bolli, Niccolo; Bourque, Guillaume; Gerstein, Mark; Park, Peter J.; Wedge, David C.; Beroukhim, Rameen; Torrents, David; Korbel, Jan O.; Martincorena, Inigo; Fitzgerald, Rebecca C.; Van Loo, Peter; Kazazian, Haig H.; Burns, Kathleen H.; Campbell, Peter J.; Tubio, Jose M. C.; Akdemir, Kadir C.; Boutros, Paul C.; Bowtell, David D. L.; Brors, Benedikt; Chan, Kin; Cortes-Ciriano, Isidro; Dunford, Andrew J.; Edwards, Paul A.; Estivill, Xavier; Etemadmoghadam, Dariush; Feuerbach, Lars; Fink, J. Lynn; Frenkel-Morgenstern, Milana; Garsed, Dale W.; Gordenin, Dmitry A.; Haan, David; Haber, James E.; Hess, Julian M.; Hutter, Barbara; Imielinski, Marcin; Jones, David T. W.; Kazanov, Marat D.; Klimczak, Leszek J.; Koh, Youngil; Kumar, Kiran; Lee, Jake June-Koo; Lynch, Andy G.; Macintyre, Geoff; Markowetz, Florian; Martinez-Fundichely, Alexander; Meyerson, Matthew; Miyano, Satoru; Nakagawa, Hidewaki; Ossowski, Stephan; Pearson, John, V; Rippe, Karsten; Roberts, Steven A.; Scully, Ralph; Shackleton, Mark; Sidiropoulos, Nikos; Sieverling, Lina; Stewart, Chip; Villasante, Izar; Waddell, Nicola; Yang, Lixing; Yao, Xiaotong; Yoon, Sung-Soo; Zhang, Cheng-Zhong 分享 收藏 Pervasive intra-tumour heterogeneity and subclonal selection across cancer typesDentro, Stefan; Leshchiner, Ignaty; Haase, Kerstin; Wintersinger, Jeff; Deshwar, Amit; Tarabichi, Maxime; Rubanova, Yulia; Yu, Kaixian; Garcia, Ignacio Vazquez; Macintyre, Geoff; Kleinheinz, Kortine; Livitz, Dimitri; Malikic, Salem; Donmez, Nilgun; Sengupta, Subhajit; Ji, Yuan; Demeulemeester, Jonas; Anur, Pavana; Jolly, Clemency; Cmero, Marek; Rosebrock, Daniel; Schumacher, Steve; Fan, Yu; Fittall, Matthew; Yao, Xiaotong; Lee, Juhee; Schlesner, Matthias; Zhu, Hongtu; Adams, David; Getz, Gad; Boutros, Paul; Imielinski, Marcin; Beroukhim, Rameen; Sahinalp, Cenk; Peifer, Martin; Martincorena, Inigo; Markowetz, Florian; Mustonen, Ville; Yuan, Ke; Gerstung, Moritz; Wang, Wenyi; Spellman, Paul; Morris, Quaid; Wedge, David; Van Loo, Peter 分享 收藏 The evolutionary history of 2,658 cancersJolly, Clemency; Gerstung, Moritz; Leshchiner, Ignaty; Dentro, Stefan C.; Gonzalez, Santiago; Mitchell, Thomas J.; Rubanova, Yulia; Anur, Pavana; Rosebrock, Daniel; Yu, Kaixian; Tarabichi, Maxime; Deshwar, Amit; Wintersinger, Jeff; Kleinheinz, Kortine; Vasquez-Garcia, Ignacio; Haase, Kerstin; Sengupta, Subhajit; Macintyre, Geoff; Malikic, Salem; Donmez, Nilgun; Livitz, Dimitri G.; Cmero, Mark; Demeulemeester, Jonas; Schumacher, Steve; Fan, Yu; Yao, Xiaotong; Lee, Juhee; Schlesner, Matthias; Boutros, Paul C.; Bowtell, David D.; Zhu, Hongtu; Getz, Gad; Imielinski, Marcin; Beroukhim, Rameen; Sahinalp, S. Cenk; Ji, Yuan; Peifer, Martin; Markowetz, Florian; Mustonen, Ville; Juan, Ke; Wang, Wenyi; Morris, Quaid D.; Spellman, Paul T.; Wedge, David C.; Van Loo, Peter 分享 收藏 SvABA: genome-wide detection of structural variants and indels by local assemblySvABA: 通过局部组装在全基因组范围内检测结构变体和插入缺失Wala, Jeremiah A.; Bandopadhayay, Pratiti; Greenwald, Noah F.; O'Rourke, Ryan; Sharpe, Ted; Stewart, Chip; Schumacher, Steve; Li, Yilong; Weischenfeldt, Joachim; Yao, Xiaotong; Nusbaum, Chad; Campbell, Peter; Getz, Gad; Meyerson, Matthew; Zhang, Cheng-Zhong; Imielinski, Marcin; Beroukhim, Rameen 分享 收藏 分享 收藏 
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