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F

Ferhat Ay

La Jolla Institute for Immunology

46H指数
196论文数
9.6K被引数
收录论文 69
发表时间
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Genomic language model for predicting enhancers and their allele-specific activity in the human genome基因组语言模型用于预测增强子及其在人基因组中的等位基因特异性活性
errBioinformatics
IF5.4
err2026-09-10
err0
errOAAI
errRekha Sathian; Pratik Dutta; Ferhat Ay; Ramana V Davuluri; null
err分享
err收藏
Loss of TET function in T regulatory cells yields ex-Treg cells biased toward T follicular helper cells; causing autoimmune diseases through autoantibody productionTET功能在调节性T细胞中的丧失会产生偏向于滤泡辅助T细胞的ex-Treg细胞；通过自身抗体产生引发自身免疫性疾病。
errFrontiers in Immunology
IF5.9
err2026-03-31
err0
errOAAI
errKS Kazumasa Suzuki; LJ Leo J. Arteaga-Vazquez; BV Bruno Villalobos Reveles; LH Lot Hernández-Espinosa; IF Isaac F. López-Moyado; AO Atsushi Onodera; DS Daniela Samaniego-Castruita; FA Ferhat Ay; AL Arlet Lara-Custodio; PG Patrick G. Hogan; HS Hugo Sepulveda; AR Anjana Rao
err分享
err收藏
TH17 cells converted into exTH17 cells sustain rheumatoid-like IL-17–independent inflammatory arthritisTH17细胞转化为exTH17细胞可维持类风湿样IL-17非依赖性炎性关节炎
errScience Immunology
IF16.3
err2025-11-07
err0
PREAI
errMartina Zoccheddu; Kensuke Suga; Amara Seng; Mattias N. D. Svensson; Paramita Dutta; Sanaz Panahandeh; Hadijat-Kubura Moradeke Makinde; Myungja Ro; Yizhou Wang; Hyobin Kim; Zbigniew Mikulski; Katarzyna Dobaczewska; Francesca Ingegnoli; Ruth Minsha; John F. Seagrist; Mary Carns; Kathleen Aren; Salina Dominguez; Mohammad Daud Khan; Angela Denn; Roberto Caporali; Pietro Simone Randelli; David A. McBride; Arthur M. Mandelin; Carla Marie Cuda; Zhiping Paul Wang; Jason H. Moore; Nisarg J. Shah; Kyoung Jae Won; Deborah R. Winter; Ferhat Ay; Harris Perlman; Nunzio Bottini
err分享
err收藏
High interferon response signatures in SLE patient leukocytes are associated with increased transposable element expression in gene introns and intergenic regions系统性红斑狼疮（SLE）患者白细胞中高干扰素反应特征与基因内含子和基因间区可移动元件表达增加相关。
errMobile DNA
IF3.1
err2025-11-04
err0
errOAAI
errLeo J. Arteaga-Vazquez; Hugo Sepulveda; Bruno Villalobos Reveles; Kazumasa Suzuki; Kenneth C. Kalunian; Ferhat Ay; Mark R. Boothby; Anjana Rao
err分享
err收藏
DiffHiChIP: Identifying differential chromatin contacts from HiChIP dataDiffHiChIP：从HiChIP数据中识别差异染色质接触
errCell Reports Methods
IF4.5
err2025-11-03
err0
errOAAI
errSourya Bhattacharyya; Daniela Salgado Figueroa; Katia Georgopoulos; Ferhat Ay
err分享
err收藏
Single-cell transcriptomics of ventral forebrain progenitors identifies Evf2 enhancer lncRNA-enhancer gene guidance through direct RNA binding and RNP recruitment domains腹侧前脑祖细胞的单细胞转录组学鉴定了Evf2增强子lncRNA通过直接RNA结合和RNP招募域介导增强子-基因导向
errNature Communications
IF15.7
err2025-07-26
err0
errOAAI
errEdward Li; Abhijit Chakraborty; Sara J. Kohtz; Ivelisse Cajigas; Laura Hinojosa-Gonzalez; Fion Shiau; Ryan Bertossi; Robert J. Vassar; Jack A. Kessler; Ferhat Ay; Brian S. Clark; Jhumku D. Kohtz
err分享
err收藏
Soffritto: a deep learning model for predicting high-resolution replication timingSoffritto：一种用于预测高分辨率复制时间的人工智能模型
errBIOINFORMATICS
IF5.4
err2025-07-01
err1
errOAAI
errBolzan, Dante; Ay, Ferhat
err分享
err收藏
Rewiring of the 3D genome during acquisition of carboplatin resistance in a triple-negative breast cancer patient-derived xenograft (vol 13, 5420, 2023)
errSCIENTIFIC REPORTS
IF3.9
err2024-12-17
err0
errOAAI
errDozmorov, Mikhail G.; Marshall, Maggie A.; Rashid, Narmeen S.; Grible, Jacqueline M.; Valentine, Aaron; Olex, Amy L.; Murthy, Kavita; Chakraborty, Abhijit; Reyna, Joaquin; Figueroa, Daniela Salgado; Hinojosa-Gonzalez, Laura; Lee, Erika Da-Inn; Baur, Brittany A.; Roy, Sushmita; Ay, Ferhat; Harrell, J. Chuck
err分享
err收藏
Comparison of CD30L and OX40L Reveals CD30L as a Promising Therapeutic Target in Atopic Dermatitis
errALLERGY
IF12
err2024-11-26
err0
PREAI
errGupta, Rinkesh K.; Figueroa, Daniela Salgado; Ay, Ferhat; Causton, Benjamin; Abdollahi, Shahla; Croft, Michael
err分享
err收藏
Eosinophilic esophagitis drives tissue fibroblast regenerative programs toward pathologic dysfunction嗜酸性食管炎驱动组织成纤维细胞再生程序向病理功能障碍发展。
errJOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY
IF11.2
err2024-11-01
err0
PREAI
errJumabay, Medet; Abud, Edsel M.; Okamoto, Kevin; Dutta, Paramita; Chiang, Austin W. T.; Li, Haining; Manresa, Mario C.; Zhu, Yanfang P.; Frederick, Dana; Kurten, Richard; Croker, Ben; Lewis, Nathan E.; Kennedy, Joshua L.; Dohil, Ranjan; Croft, Michael; Ay, Ferhat; Wechsler, Joshua B.; Aceves, Seema S.
err分享
err收藏
Identifying genetic variants associated with chromatin looping and genome function
errNATURE COMMUNICATIONS
IF15.7
err2024-09-18
err0
errOAAI
errBhattacharyya, Sourya; Ay, Ferhat
err分享
err收藏
Predicting gene expression state and prioritizing putative enhancers using 5hmC signal
errGENOME BIOLOGY
IF9.4
err2024-06-03
err0
errOAAI
errGonzalez-Avalos, Edahi; Onodera, Atsushi; Samaniego-Castruita, Daniela; Rao, Anjana; Ay, Ferhat
err分享
err收藏
Integrative Keratinocyte Responses to TWEAK with IL-13 and IL-22 Reveal Pathogenic Transcriptomes Associated with Atopic Dermatitis
errJOURNAL OF INVESTIGATIVE DERMATOLOGY
IF5.7
err2024-05-01
err0
PREAI
errGupta, Rinkesh K.; Fung, Kai; Figueroa, Daniela Salgado; Ay, Ferhat; Croft, Michael
err分享
err收藏
LIGHT signaling through LTβR and HVEM in keratinocytes promotes psoriasis and atopic dermatitis-like skin inflammation
errJOURNAL OF AUTOIMMUNITY
IF7
err2024-04-01
err5
PREAI
errGupta, Rinkesh K.; Figueroa, Daniela Salgado; Fung, Kai; Miki, Haruka; Miller, Jacqueline; Ay, Ferhat; Croft, Michael
err分享
err收藏
A multi-omics systems vaccinology resource to develop and test computational models of immunity
errCELL REPORTS METHODS
IF4.5
err2024-03-01
err0
errOAAI
errShinde, Pramod; Soldevila, Ferran; Reyna, Joaquin; Aoki, Minori; Rasmussen, Mikkel; Willemsen, Lisa; Kojima, Mari; Ha, Brendan; Greenbaum, Jason A.; Overton, James A.; Guzman-Orozco, Hector; Nili, Somayeh; Orfield, Shelby; Gygi, Jeremy P.; Antunes, Ricardo da Silva; Sette, Alessandro; Grant, Barry; Olsen, Lars Ronn; Konstorum, Anna; Guan, Leying; Ay, Ferhat; Kleinstein, Steven H.; Peters, Bjoern
err分享
err收藏
Rewiring of the 3D genome during acquisition of carboplatin resistance in a triple-negative breast cancer patient-derived xenograft (vol 13, 5420, 2023)
errSCIENTIFIC REPORTS
IF3.9
err2023-05-09
err0
errOAAI
errDozmorov, Mikhail G.; Marshall, Maggie A.; Rashid, Narmeen S.; Grible, Jacqueline M.; Valentine, Aaron; Olex, Amy L.; Murthy, Kavita; Chakraborty, Abhijit; Reyna, Joaquin; Figueroa, Daniela Salgado; Hinojosa-Gonzalez, Laura; Da-Inn Lee, Erika; Baur, Brittany A.; Roy, Sushmita; Ay, Ferhat; Harrell, J. Chuck
err分享
err收藏
Rewiring of the 3D genome during acquisition of carboplatin resistance in a triple-negative breast cancer patient-derived xenograft
errSCIENTIFIC REPORTS
IF3.9
err2023-04-03
err5
errOAAI
errDozmorov, Mikhail G.; Marshall, Maggie A.; Rashid, Narmeen S.; Grible, Jacqueline M.; Valentine, Aaron; Olex, Amy L.; Murthy, Kavita; Chakraborty, Abhijit; Reyna, Joaquin; Figueroa, Daniela Salgado; Hinojosa-Gonzalez, Laura; Da-Inn Lee, Erika; Baur, Brittany A.; Roy, Sushmita; Ay, Ferhat; Harrell, J. Chuck
err分享
err收藏
Lymphotoxin beta receptor signaling directly controls airway smooth muscle deregulation and asthmatic lung dysfunction
errJOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY
IF11.2
err2023-04-01
err6
errOAAI
errMiki, Haruka; Kiosses, William B.; Manresa, Mario C.; Gupta, Rinkesh K.; Sethi, Gurupreet S.; Herro, Rana; Antunes, Ricardo Da Silva; Dutta, Paramita; Miller, Marina; Fung, Kai; Chawla, Ashu; Dobaczewska, Katarzyna; Ay, Ferhat; Broide, David H.; Tumanov, Alexei V.; Croft, Michael
err分享
err收藏
Carboplatin resistance-associated changes in the 3D chromatin landscape of a triple-negative breast cancer Patient-Derived Xenograft
errCANCER RESEARCH
IF16.6
err2023-03-01
err0
PREAI
errDozmorov, Mikhail; Marshall, Maggie; Rashid, Narmeen; Grible, Jacqueline; Valentine, Aaron D.; Olex, Amy; Murthy, Kavita; Chakraborty, Abhijit; Reyna, Joaquin; Figueroa, Daniela Salgado; Lee, Da-Inn; Baur, Brittany; Roy, Sushmita; Ay, Ferhat; Harrell, Chuck
err分享
err收藏
dcHiC detects differential compartments across multiple Hi-C datasets
errNATURE COMMUNICATIONS
IF15.7
err2022-11-11
err23
errOAAI
errChakraborty, Abhijit; Wang, Jeffrey G.; Ay, Ferhat
err分享
err收藏

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