Janetta Top - Publications, H-index & Citations

Janetta Top

utrecht university

42H指数

109论文数

8.8K被引数

收录论文 55

发表时间

Limited value of Nanopore adaptive sampling in a long-read metagenomic profiling workflow of clinical sputum samples 临床痰样本长读长宏基因组分析工作流程中Nanopore adaptive sampling的有限价值

BMC MEDICAL GENOMICS

IF2

2025-12-01

PREAI

Xu, Weizhen; Top, Janetta; Viveen, Mattheus C.; Slyzkyi, Andrii; Hermans, Noud; van Erp, Sarah; Eiloz, Dafna; Anthony, Richard; Kremer, Kristin; Schurch, Anita C.

Omnigene-Gut™ ensures fecal microbiome stability in the pediatric population

AMB EXPRESS

IF3.7

2024-12-06

OAAI

Hoogendijk, Raoull; van den Broek, Thijs J. M.; Lee, Hyunju; Mueller, Sabine; Kline, Cassie; Bianco, John; Top, Janetta; de Zoete, Marcel R.; Kester, Lennart; Calkoen, Friso; van der Lugt, Jasper

Next-generation IgA-SEQ allows for high-throughput, anaerobic, and metagenomic assessment of IgA-coated bacteria 下一代IgA SEQ允许对IgA包被的细菌进行高通量，厌氧和宏基因组评估

MICROBIOME

IF12.7

2024-10-21

OAAI

van Gogh, Merel; Louwers, Jonas M.; Celli, Anna; Graeve, Sanne; Viveen, Marco C.; Bosch, Sofie; de Boer, Nanne K. H.; Verheijden, Rik J.; Suijkerbuijk, Karijn P. M.; Brand, Eelco C.; Top, Janetta; Oldenburg, Bas; de Zoete, Marcel R.

Detecting co-selection through excess linkage disequilibrium in bacterial genomes

genomics proteomics bioinformatics

IF2.8

2024-06-06

OAAI

Mallawaarachchi, Sudaraka; Tonkin-Hill, Gerry; Pontinen, Anna K.; Calland, Jessica K.; Gladstone, Rebecca A.; Arredondo-Alonso, Sergio; MacAlasdair, Neil; Thorpe, Harry A.; Top, Janetta; Sheppard, Samuel K.; Balding, David; Croucher, Nicholas J.; Corander, Jukka

The population-level impact of Enterococcus faecalis genetics on intestinal colonization and extraintestinal infection 粪肠球菌遗传学对肠道定植和肠外感染的群体水平影响

MICROBIOLOGY SPECTRUM

IF3.8

2023-12-12

OAAI

Chaguza, Chrispin; Poentinen, Anna K.; Top, Janetta; Arredondo-Alonso, Sergio; Freitas, Ana R.; Novais, Carla; Torres, Carmen; Bentley, Stephen D.; Peixe, Luisa; Coque, Teresa M.; Willems, Rob J. L.; Corander, Jukka

Gut microbiome dynamics in index patients colonized with extended-spectrum beta-lactamase (ESBL)-producing Enterobacterales after hospital discharge and their household contacts

MICROBIOLOGY SPECTRUM

IF3.8

2023-12-12

OAAI

Top, Janetta; Verschuuren, Tess D.; Viveen, Marco C.; Riccio, M. Eugenia; Harbarth, Stephan; Kluytmans, Jan A. J. W.; Willems, Rob J. L.; Paganelli, Fernanda L.

Apparent nosocomial adaptation of Enterococcus faecalis predates the modern hospital era

NATURE COMMUNICATIONS

IF15.7

2021-03-09

OAAI

Pontinen, Anna K.; Top, Janetta; Arredondo-Alonso, Sergio; Tonkin-Hill, Gerry; Freitas, Ana R.; Novais, Carla; Gladstone, Rebecca A.; Pesonen, Maiju; Meneses, Rodrigo; Pesonen, Henri; Lees, John A.; Jamrozy, Dorota; Bentley, Stephen D.; Lanza, Val F.; Torres, Carmen; Peixe, Luisa; Coque, Teresa M.; Parkhill, Julian; Schurch, Anita C.; Willems, Rob J. L.; Corander, Jukka

Mode and dynamics of vanA-type vancomycin resistance dissemination in Dutch hospitals 荷兰医院万纳型万古霉素耐药传播的模式和动力学

GENOME MEDICINE

IF11.2

2021-01-20

OAAI

Arredondo-Alonso, Sergio; Top, Janetta; Corander, Jukka; Willems, Rob J. L.; Schurch, Anita C.

Comparative genomics of ESBL-producing Escherichia coli (ESBL-Ec) reveals a similar distribution of the 10 most prevalent ESBL-Ec clones and ESBL genes among human community faecal and extra-intestinal infection isolates in the Netherlands (2014-17)

JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

IF3.6

2021-01-11

OAAI

Verschuuren, T. D.; van Hout, D.; Arredondo-Alonso, S.; Fluit, A. C.; Reuland, E. A.; Top, J.; Schurch, A. C.; Bosch, T.; Bonten, M. J. M.; Kluytmans, J. A. J. W.; Willems, R. J. L.

Genomic rearrangements uncovered by genome-wide co-evolution analysis of a major nosocomial pathogen, Enterococcus faecium 通过主要医院病原体屎肠球菌的全基因组协同进化分析发现的基因组重排

MICROBIAL GENOMICS

IF4

2020-12-01

OAAI

Top, Janetta; Arredondo-Alonso, Sergio; Schurch, Anita C.; Puranen, Santeri; Pesonen, Maiju; Pensar, Johan; Willems, Rob J. L.; Corander, Jukka

Plasmids Shaped the Recent Emergence of the Major Nosocomial Pathogen Enterococcus faecium

MBIO

IF4.7

2020-02-25

OAAI

Arredondo-Alonso, S.; Top, J.; McNally, A.; Puranen, S.; Pesonen, M.; Pensar, J.; Marttinen, P.; Braat, J. C.; Rogers, M. R. C.; van Schaik, W.; Kaski, S.; Willems, R. J. L.; Corander, J.; Schurch, A. C.

Low-calcium diet in mice leads to reduced gut colonization by Enterococcus faecium

MICROBIOLOGYOPEN

IF4.6

2019-09-30

OAAI

Top, Janetta; Hendrickx, Antoni P. A.; van Ampting, Marleen T. J.; van Limpt, Kees; Knol, Jan; van de Kamer, Denise; Braat, Johanna C.; Viveen, Marco; Rogers, Malbert R.; Kemperman, Hans; Willems, Rob J. L.; Paganelli, Fernanda L.

In vivo acquisition of fosfomycin resistance in Escherichia coli by fosA transmission from commensal flora

JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

IF3.6

2019-09-11

OAAI

ten Doesschate, Thijs; Abbott, Iain J.; Willems, Rob J. L.; Top, Janetta; Rogers, Malbert R. C.; Bonten, Marc M.; Paganelli, Fernanda L.

mlplasmids: a user-friendly tool to predict plasmid- and chromosome-derived sequences for single species (vol 4, 000224, 2018)

MICROBIAL GENOMICS

IF4

2019-01-01

OAAI

Arredondo-Alonso, Sergio; Rogers, Malbert R. C.; Braat, Johanna C.; Verschuuren, Tess D.; Top, Janetta; Corander, Jukka; Willems, Rob J. L.; Schurch, Anita C.

mlplasmids: a user-friendly tool to predict plasmid- and chromosome-derived sequences for single species

MICROBIAL GENOMICS

IF4

2018-11-01

135

OAAI

Arredondo-Alonso, Sergio; Rogers, Malbert R. C.; Braat, Johanna C.; Verschuuren, Tess D.; Top, Janetta; Corander, Jukka; Willems, Rob J. L.; Schurch, Anita C.

Identification of a Novel Genomic Island Associated with vanD-Type Vancomycin Resistance in Six Dutch Vancomycin-Resistant Enterococcus faecium Isolates

ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

IF4.5

2018-03-01

OAAI

Top, Janetta; Sinnige, Jan C.; Brouwer, Ellen C.; Werner, Guido; Corander, Jukka; Severin, Juliette A.; Jansen, Rogier; Bathoorn, E.; Bonten, Marc J. M.; Rossen, John W. A.; Willems, Rob J. L.

Intestinal carriage of ampicillin- and vancomycin-resistant Enterococcus faecium in humans, dogs and cats in the Netherlands

JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

IF3.6

2017-12-25

OAAI

van den Bunt, G.; Top, J.; Hordijk, J.; de Greeff, S. C.; Mughini-Gras, L.; Corander, J.; van Pelt, W.; Bonten, M. J. M.; Fluit, A. C.; Willems, R. J. L.

Characterization of Enterococcus Isolates Colonizing the Intestinal Tract of Intensive Care Unit Patients Receiving Selective Digestive Decontamination

FRONTIERS IN MICROBIOLOGY

IF4.5

2017-08-28

OAAI

Gonzalez, Teresita d. J. Bello; Pham, Phu; Top, Janetta; Willems, Rob J. L.; van Schaik, Willem; van Passel, Mark W. J.; Smidt, Hauke

Antibiotic-Driven Dysbiosis Mediates Intraluminal Agglutination and Alternative Segregation of Enterococcus faecium from the Intestinal Epithelium

MBIO

IF4.7

2015-12-31

OAAI

Hendrickx, Antoni P. A.; Top, Janetta; Bayjanov, Jumamurat R.; Kemperman, Hans; Rogers, Malbert R. C.; Paganelli, Fernanda L.; Bonten, Marc J. M.; Willems, Rob J. L.

Core Genome Multilocus Sequence Typing Scheme for High-Resolution Typing of Enterococcus faecium

JOURNAL OF CLINICAL MICROBIOLOGY

IF5.4

2015-12-01

218

OAAI

de Been, Mark; Pinholt, Mette; Top, Janetta; Bletz, Stefan; Mellmann, Alexander; van Schaik, Willem; Brouwer, Ellen; Rogers, Malbert; Kraat, Yvette; Bonten, Marc; Corander, Jukka; Westh, Henrik; Harmsen, Dag; Willems, Rob J. L.

研究方向