Liangpeng Nie - Publications, H-index & Citations

Liangpeng Nie

soochow university

4H指数

12论文数

37被引数

收录论文 11

发表时间

Identifying batch-integrated domains from spatial transcriptomics via graph autoencoder with contrastive learning based on cross-modality and data augmentation 通过基于跨模态和数据增强的对比学习图自编码器从空间转录组学中识别批量集成域

Briefings in Bioinformatics

IF7.7

2026-05-25

OAAI

Yexuan Mao; Lijun Quan; Xiangyu Chen; Siyuan Wang; Guozheng Zhang; Siqi Li; Yelu Jiang; Liangpeng Nie; Tingfang Wu; Lingkun Meng; Qiang Lyu; null

MAPCliff-WMGR: Exploring Activity Cliffs in Molecular Activity Prediction Enhanced by Weighted Molecular Graph Representations MAPCliff-WMGR：通过加权分子图表示增强的分子活性预测中探索活性悬崖

JOURNAL OF CHEMICAL INFORMATION AND MODELING

IF5.3

2025-11-01

PREAI

Chen, Yiwei; Wu, Tingfang; Jiang, Yelu; Nie, Liangpeng; Li, Geng; Zhang, Yi; Zhou, Zhenglong; Xu, Jia; Quan, Lijun; Lyu, Qiang

LABind: identifying protein binding ligand-aware sites via learning interactions between ligand and protein LABind：通过学习配体与蛋白质之间的相互作用来识别具有配体意识的蛋白质结合位点

Nature Communications

IF15.7

2025-08-19

OAAI

Zhijun Zhang; Lijun Quan; Junkai Wang; Liangchen Peng; Qiufeng Chen; Bei Zhang; Lexin Cao; Yelu Jiang; Geng Li; Liangpeng Nie; Tingfang Wu; Qiang Lyu

AACDR: Integrating Graph Isomorphism Networks and Asymmetric Adversarial Domain Adaptation for Cancer Drug Response Prediction AACDR：整合图同构网络和不对称对抗领域自适应的癌症药物反应预测

Journal of Chemical Information and Modeling

IF5.3

2025-07-22

PREAI

Yi Zhang; Tingfang Wu; Liangpeng Nie; Yelu Jiang; Geng Li; Jia Xu; Zhenglong Zhou; Yiwei Chen; Lijun Quan; Qiang Lyu

Prediction of pathogenic mutations in human transmembrane proteins and their associated diseases via utilizing pre-trained Bio-LLMs 利用预训练的Bio-LLMs预测人类跨膜蛋白中的致病突变及其相关疾病

Communications Biology

IF5.1

2025-07-15

OAAI

Lexin Cao; Lijun Quan; Qiufeng Chen; Bei Zhang; Zhijun Zhang; Liangchen Peng; Junkai Wang; Yelu Jiang; Liangpeng Nie; Geng Li; Tingfang Wu; Qiang Lyu

MMSol: Predicting Protein Solubility with an Antinoise Multimodal Deep Model MMSol: 预测蛋白质溶解度的一种抗噪声多模态深度模型

Journal of Chemical Information and Modeling

IF5.3

2025-06-13

PREAI

Jia Xu; Tingfang Wu; Yelu Jiang; Liangpeng Nie; Geng Li; Yi Zhang; Zhenglong Zhou; Yiwei Chen; Lijun Quan; Qiang Lyu

DS-MVP: identifying disease-specific pathogenicity of missense variants by pre-training representation DS-MVP：通过预训练表征识别错义变异的疾病特异性致病性

BRIEFINGS IN BIOINFORMATICS

IF7.7

2025-03-24

OAAI

Chen, Qiufeng; Quan, Lijun; Cao, Lexin; Zhang, Bei; Zhang, Zhijun; Peng, Liangchen; Wang, Junkai; Jiang, Yelu; Nie, Liangpeng; Li, Geng; Wu, Tingfang; Lyu, Qiang

MVCL-DTI: Predicting Drug-Target Interactions Using a Multiview Contrastive Learning Model on a Heterogeneous Graph

JOURNAL OF CHEMICAL INFORMATION AND MODELING

IF5.3

2025-01-15

PREAI

Zhang, Bei; Quan, Lijun; Zhang, Zhijun; Cao, Lexin; Chen, Qiufeng; Peng, Liangchen; Wang, Junkai; Jiang, Yelu; Nie, Liangpeng; Li, Geng; Wu, Tingfang; Lyu, Qiang

Learning Useful Representations of DNA Sequences From ChIP-Seq Datasets for Exploring Transcription Factor Binding Specificities

IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS

IF3.4

2022-03-01

PREAI

Quan, Lijun; Sun, Xiaoyu; Wu, Jian; Mei, Jie; Huang, Liqun; He, Ruji; Nie, Liangpeng; Chen, Yu; Lyu, Qiang

Quantifying Intensities of Transcription Factor-DNA Binding by Learning From an Ensemble of Protein Binding Microarrays

IEEE JOURNAL OF BIOMEDICAL AND HEALTH INFORMATICS

IF6.8

2021-07-01

PREAI

Quan, Lijun; Mei, Jie; He, Ruji; Sun, Xiaoyu; Nie, Liangpeng; Li, Kailong; Lyu, Qiang

MetaMBP: Few-Shot Multilabel Prediction of Bioactive Peptides Based on Deep Metric Meta-Learning MetaMBP：基于深度度量元学习的生物活性肽少样本多标签预测

Journal of Chemical Information and Modeling

IF5.3

PREAI

Zhenglong Zhou; Tingfang Wu; Yelu Jiang; Geng Li; Liangpeng Nie; Jia Xu; Yi Zhang; Yiwei Chen; Lijun Quan; Qiang Lyu

研究方向