K. Vijay‐Shanker - Publications, H-index & Citations

K. Vijay‐Shanker

University of Delaware

44H指数

185论文数

6.8K被引数

收录论文 21

发表时间

The Glycan Structure Dictionary-a dictionary describing commonly used glycan structure terms 聚糖结构词典-描述常用聚糖结构术语的词典

GLYCOBIOLOGY

IF3.3

2023-02-17

PREAI

Vora, Jeet; Navelkar, Rahi; Vijay-Shanker, K.; Edwards, Nathan; Martinez, Karina; Ding, Xiying; Wang, Tianyi; Su, Peng; Ross, Karen; Lisacek, Frederique; Hayes, Catherine; Kahsay, Robel; Ranzinger, Rene; Tiemeyer, Michael; Mazumder, Raja

emiRIT: a text-mining-based resource for microRNA information

DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION

IF3.6

2021-05-28

OAAI

Roychowdhury, Debarati; Gupta, Samir; Qin, Xihan; Arighi, Cecilia N.; Vijay-Shanker, K.

OncoMX: A Knowledgebase for Exploring Cancer Biomarkers in the Context of Related Cancer and Healthy Data

JCO CLINICAL CANCER INFORMATICS

IF2.8

2020-11-01

OAAI

Dingerdissen, Hayley M.; Bastian, Frederic; Vijay-Shanker, K.; Robinson-Rechavi, Marc; Bell, Amanda; Gogate, Nikhita; Gupta, Samir; Holmes, Evan; Kahsay, Robel; Keeney, Jonathon; Kincaid, Heather; King, Charles Hadley; Liu, David; Crichton, Daniel J.; Mazumder, Raja

Prototype open-access biomarker knowledgebase for genetic tests for breast cancer

CANCER RESEARCH

IF16.6

2019-07-01

PREAI

Baker, Dara; Abrams, Natalie Fedorova; Bell, Amanda; Colbert, Maureen; Dingerdissen, Hayley; Holmes, Evan; Gupta, Samir; Kahsay, Robel; Kincaid, Heather; Liu, David; Mahmood, A. S. M. Ashique; Bastian, Frederic B.; Robinson-Rechavi, Marc; Schwartz, Elena; Vijay-Shanker, K.; Crichton, Daniel; Mazumder, Raja

iTextMine: integrated text-mining system for large-scale knowledge extraction from the literature

DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION

IF3.6

2018-12-14

OAAI

Ren, Jia; Li, Gang; Ross, Karen; Arighi, Cecilia; McGarvey, Peter; Rao, Shruti; Cowart, Julie; Madhavan, Subha; Vijay-Shanker, K.; Wu, Cathy H.

Automatic gene annotation using GO terms from cellular component domain

BMC MEDICAL INFORMATICS AND DECISION MAKING

IF3.8

2018-12-07

OAAI

Ding, Ruoyao; Qu, Yingying; Wu, Cathy H.; Vijay-Shanker, K.

DEXTER: Disease-Expression Relation Extraction from Text

DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION

IF3.6

2018-05-30

OAAI

Gupta, Samir; Dingerdissen, Hayley; Ross, Karen E.; Hu, Yu; Wu, Cathy H.; Mazumder, Raja; Vijay-Shanker, K.

iPTMnet: an integrated resource for protein post-translational modification network discovery

NUCLEIC ACIDS RESEARCH

IF13.1

2017-11-14

113

OAAI

Huang, Hongzhan; Arighi, Cecilia N.; Ross, Karen E.; Ren, Jia; Li, Gang; Chen, Sheng-Chih; Wang, Qinghua; Cowart, Julie; Vijay-Shanker, K.; Wu, Cathy H.

eGenPub, a text mining system for extending computationally mapped bibliography for UniProt Knowledgebase by capturing centrality

DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION

IF3.6

2017-11-13

OAAI

Ding, Ruoyao; Boutet, Emmanuel; Lieberherr, Damien; Schneider, Michel; Tognolli, Michael; Wu, Cathy H.; Vijay-Shanker, K.; Arighi, Cecilia N.

BioCreative V BioC track overview: collaborative biocurator assistant task for BioGRID

DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION

IF3.6

2016-09-01

OAAI

Kim, Sun; Dogan, Rezarta Islamaj; Chatr-Aryamontri, Andrew; Chang, Christie S.; Oughtred, Rose; Rust, Jennifer; Batista-Navarro, Riza; Carter, Jacob; Ananiadou, Sophia; Matos, Sergio; Santos, Andre; Campos, David; Oliveira, Jose Luis; Singh, Onkar; Jonnagaddala, Jitendra; Dai, Hong-Jie; Su, Emily Chia-Yu; Chang, Yung-Chun; Su, Yu-Chen; Chu, Chun-Han; Chen, Chien Chin; Hsu, Wen-Lian; Peng, Yifan; Arighi, Cecilia; Wu, Cathy H.; Vijay-Shanker, K.; Aydin, Ferhat; Husunbeyi, Zehra Melce; Ozgur, Arzucan; Shin, Soo-Yong; Kwon, Dongseop; Dolinski, Kara; Tyers, Mike; Wilbur, W. John; Comeau, Donald C.

BioC-compatible full-text passage detection for protein-protein interactions using extended dependency graph

DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION

IF3.6

2016-05-11

OAAI

Peng, Yifan; Arighi, Cecilia; Wu, Cathy H.; Vijay-Shanker, K.

Transcriptome response to heat stress in a chicken hepatocellular carcinoma cell line

CELL STRESS & CHAPERONES

IF3.2

2015-11-01

OAAI

Sun, Liang; Lamont, Susan J.; Cooksey, Amanda M.; McCarthy, Fiona; Tudor, Catalina O.; Vijay-Shanker, K.; DeRita, Rachael M.; Rothschild, Max; Ashwell, Chris; Persia, Michael E.; Schmidt, Carl J.

Construction of phosphorylation interaction networks by text mining of full-length articles using the eFIP system

DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION

IF3.6

2015-03-31

OAAI

Tudor, Catalina O.; Ross, Karen E.; Li, Gang; Vijay-Shanker, K.; Wu, Cathy H.; Arighi, Cecilia N.

RLIMS-P 2.0: A Generalizable Rule-Based Information Extraction System for Literature Mining of Protein Phosphorylation Information

IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS

IF3.4

2015-01-01

OAAI

Torii, Manabu; Arighi, Cecilia N.; Li, Gang; Wang, Qinghua; Wu, Cathy H.; Vijay-Shanker, K.

RLIMS-P: an online text-mining tool for literature-based extraction of protein phosphorylation information

DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION

IF3.6

2014-08-13

OAAI

Torii, Manabu; Li, Gang; Li, Zhiwen; Oughtred, Rose; Diella, Francesca; Celen, Irem; Arighi, Cecilia N.; Huang, Hongzhan; Vijay-Shanker, K.; Wu, Cathy H.

iSimp in BioC standard format: enhancing the interoperability of a sentence simplification system

DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION

IF3.6

2014-05-21

OAAI

Peng, Yifan; Tudor, Catalina O.; Torii, Manabu; Wu, Cathy H.; Vijay-Shanker, K.

Predicting Interacting Residues Using Long-Distance Information and Novel Decoding in Hidden Markov Models

IEEE TRANSACTIONS ON NANOBIOSCIENCE

IF4.4

2013-09-01

PREAI

Kern, Colin; Gonzalez, Alvaro J.; Liao, Li; Vijay-Shanker, K.