Sharon Aviran - Publications, H-index & Citations

Sharon Aviran

Purdue University

17H指数

60论文数

1.2K被引数

收录论文 15

发表时间

Multiomic analysis for optimization of combined focal and immunotherapy protocols in murine pancreatic cancer

THERANOSTICS

IF13.3

2022-01-01

OAAI

Wang, James; Fite, Brett Z.; Kare, Aris J.; Wu, Bo; Raie, Marina; Tumbale, Spencer K.; Zhang, Nisi; Davis, Ryan R.; Tepper, Clifford G.; Aviran, Sharon; Newman, Aaron M.; King, Daniel A.; Ferrara, Katherine W.

Accurate detection of RNA stem-loops in structurome data reveals widespread association with protein binding sites 结构数据中RNA茎环的准确检测揭示了与蛋白质结合位点的广泛关联

RNA BIOLOGY

IF3.4

2021-10-04

OAAI

Radecki, Pierce; Uppuluri, Rahul; Deshpande, Kaustubh; Aviran, Sharon

Rapid structure-function insights via hairpin-centric analysis of big RNA structure probing datasets

genomics proteomics bioinformatics

IF2.8

2021-08-24

OAAI

Radecki, Pierce; Uppuluri, Rahul; Aviran, Sharon

Stability and nuclear localization of yeast telomerase depend on protein components of RNase P/MRP 酵母端粒酶的稳定性和核定位取决于RNase P/MRP的蛋白质成分

NATURE COMMUNICATIONS

IF15.7

2020-05-01

OAAI

Garcia, P. Daniela; Leach, Robert W.; Wadsworth, Gable M.; Choudhary, Krishna; Li, Hua; Aviran, Sharon; Kim, Harold D.; Zakian, Virginia A.

Genome-Wide Discovery of DEAD-Box RNA Helicase Targets Reveals RNA Structural Remodeling in Transcription Termination

GENETICS

IF5.1

2019-03-22

OAAI

Lai, Yu-Hsuan; Choudhary, Krishna; Cloutier, Sara C.; Xing, Zheng; Aviran, Sharon; Tran, Elizabeth J.

dStruct: identifying differentially reactive regions from RNA structurome profiling data

GENOME BIOLOGY

IF9.4

2019-02-21

OAAI

Choudhary, Krishna; Lai, Yu-Hsuan; Tran, Elizabeth J.; Aviran, Sharon

Statistical modeling of RNA structure profiling experiments enables parsimonious reconstruction of structure landscapes (vol 9, 2018)

NATURE COMMUNICATIONS

IF15.7

2018-03-13

OAAI

Li, Hua; Aviran, Sharon

PATTERNA: transcriptome-wide search for functional RNA elements via structural data signatures

GENOME BIOLOGY

IF9.4

2018-03-01

OAAI

Ledda, Mirko; Aviran, Sharon

Statistical modeling of RNA structure profiling experiments enables parsimonious reconstruction of structure landscapes

NATURE COMMUNICATIONS

IF15.7

2018-02-09

OAAI

Li, Hua; Aviran, Sharon

Probing of RNA structures in a positive sense RNA virus reveals selection pressures for structural elements

NUCLEIC ACIDS RESEARCH

IF13.1

2017-12-23

OAAI

Watters, Kyle E.; Choudhary, Krishna; Aviran, Sharon; Lucks, Julius B.; Perry, Keith L.; Thompson, Jeremy R.

PROBer Provides a General Toolkit for Analyzing Sequencing-Based Toeprinting Assays

CELL SYSTEMS

IF7.7

2017-05-01

OAAI

Li, Bo; Tambe, Akshay; Aviran, Sharon; Pachter, Lior

Data-directed RNA secondary structure prediction using probabilistic modeling 基于概率模型的数据指导RNA二级结构预测

RNA

IF5

2016-06-01

OAAI

Deng, Fei; Ledda, Mirko; Vaziri, Sana; Aviran, Sharon

Rational experiment design for sequencing-based RNA structure mapping

RNA

IF5

2014-10-20

OAAI

Aviran, Sharon; Pachter, Lior

Modeling and automation of sequencing-based characterization of RNA structure

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

IF9.1

2011-06-03

115

OAAI

Aviran, Sharon; Trapnell, Cole; Lucks, Julius B.; Mortimer, Stefanie A.; Luo, Shujun; Schroth, Gary P.; Doudna, Jennifer A.; Arkin, Adam P.; Pachter, Lior

Multiplexed RNA structure characterization with selective 2′-hydroxyl acylation analyzed by primer extension sequencing (SHAPE-Seq)通过引物延伸测序 (shape-seq) 分析具有选择性2'-羟基酰化的多重RNA结构表征

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

IF9.1

2011-06-03

369

OAAI

Lucks, Julius B.; Mortimer, Stefanie A.; Trapnell, Cole; Luo, Shujun; Aviran, Sharon; Schroth, Gary P.; Pachter, Lior; Doudna, Jennifer A.; Arkin, Adam P.

研究方向