José Cleydson F. Silva - Publications, H-index & Citations

José Cleydson F. Silva

State University System of Florida

21H指数

55论文数

1.9K被引数

收录论文 23

发表时间

EquilibraTor Streamlines Molecular Dynamics Simulations in a Single Execution EquilibraTor 简化了单次执行中的分子动力学模拟

Computational and Structural Biotechnology Journal

IF4.1

2025-11-16

OAAI

José D.D. Cediel-Becerra; Jose Cleydson F. Silva; Raquel Dias

InteracTor: Feature engineering and explainable AI for profiling protein structure-interaction-function relationships InteracTor：特征工程与可解释人工智能在蛋白质结构-相互作用-功能关系分析中的应用

PLOS COMPUTATIONAL BIOLOGY

IF3.6

2025-10-13

PREAI

Silva, Jose Cleydson F.; Schuster, Layla; Sexson, Nick; Erdem, Melissa; Hulke, Ryan; Kirst, Matias; Resende, Marcio F. R.; Dias, Raquel

Challenges and Opportunities for New Frontiers and Technologies to Guarantee Food Production 新前沿与技术保障粮食生产的挑战与机遇

SUSTAINABILITY

IF3.3

2025-04-23

OAAI

Silva, Jose Cleydson Ferreira; Machado, Kleiton Lima de Godoy; Silva, Anna Flavia de Souza; Dias, Raquel; Bodnar, Victor Ricardo; Vieira, Wallison Oliveira; Moreno-Pizani, Maria Alejandra; Ramos, Jenifer Dias; Pauli, Ivani; da Costa, Lucas Cavalcante

Expansion and diversification of the Glycine max (Gm) ERD15-like subfamily of the PAM2-like superfamily

PLANTA

IF3.8

2024-09-27

PREAI

Fraga, Otto T.; Silva, Lucas A. C.; Silva, Jose Cleydson F.; Bevitori, Rosangela; Silva, Fredy D. A.; Pereira, Welison A.; Reis, Pedro A. B.; Fontes, Elizabeth P. B.

A systematic review and repeatability study on the use of deep learning for classifying and detecting tuberculosis bacilli in microscopic images

PROGRESS IN BIOPHYSICS & MOLECULAR BIOLOGY

IF4.5

2023-07-01

PREAI

Carvalho, Thales Francisco Mota; Santos, Vivian Ludimila Aguiar; Silva, Jose Cleydson Ferreira; Figueredo, Lida Jouca de Assis; Miranda, Silvana Spindola de; Duarte, Ricardo de Oliveira; Guimara, Frederico Gadelha

MicroRNAs expression profiles in early responses to different levels of water deficit in Setaria viridis

PHYSIOLOGY AND MOLECULAR BIOLOGY OF PLANTS

IF3.3

2022-09-28

OAAI

Duarte, Karoline Estefani; Basso, Marcos Fernando; de Oliveira, Nelson Geraldo; Ferreira da Silva, Jose Cleydson; Garcia, Bruno de Oliveira; Dias Brito Cunha, Barbara Andrade; Cardoso, Thiago Bergamo; Nepomuceno, Alexandre Lima; Kobayashi, Adilson Kenji; Santiago, Thais Ribeiro; de Souza, Wagner Rodrigo; Correa Molinari, Hugo Bruno

The significance of WRKY45 transcription factor in metabolic adjustments during dark-induced leaf senescence

PLANT CELL AND ENVIRONMENT

IF6.3

2022-07-25

PREAI

Barros, Jessica A. S.; Cavalcanti, Joao Henrique F.; Pimentel, Karla G.; Medeiros, David B.; Silva, Jose C. F.; Condori-Apfata, Jorge A.; Lapidot-Cohen, Taly; Brotman, Yariv; Nunes-Nesi, Adriano; Fernie, Alisdair R.; Avin-Wittenberg, Tamar; Araujo, Wagner L.

A long and stressful day: Photoperiod shapes aluminium tolerance in plants

JOURNAL OF HAZARDOUS MATERIALS

IF11.3

2022-06-01

OAAI

Siqueira, Joao Antonio; Wakin, Thiago; Batista-Silva, Willian; Silva, Jose Cleydson F.; Vicente, Matheus H.; Silva, Jessica C.; Clarindo, Wellington R.; Zsogon, Agustin; Peres, Lazaro E. P.; De Veylder, Lieven; Fernie, Alisdair R.; Nunes-Nesi, Adriano; Araujo, Wagner L.

A plant-specific syntaxin-6 protein contributes to the intracytoplasmic route for the begomovirus CabLCV

PLANT PHYSIOLOGY

IF6.9

2021-06-02

OAAI

Gouveia-Mageste, Bianca Castro; Costa Martins, Laura Goncalves; Dal-Bianco, Maximiller; Batista Machado, Joao Paulo; Ferreira da Silva, Jose Cleydson; Kim, Alice Y.; Yazaki, Junshi; dos Santos, Anesia Aparecida; Ecker, Joseph R.; Batista Fontes, Elizabeth Pacheco

A Begomovirus Nuclear Shuttle Protein-Interacting Immune Hub: Hijacking Host Transport Activities and Suppressing Incompatible Functions

FRONTIERS IN PLANT SCIENCE

IF4.8

2020-04-08

OAAI

Martins, Laura G. C.; Raimundo, Gabriel A. S.; Ribeiro, Nathalia G. A.; Silva, Jose Cleydson F.; Euclydes, Nivea C.; Loriato, Virgilio A. P.; Duarte, Christiane E. M.; Fontes, Elizabeth P. B.

Machine learning approaches and their current application in plant molecular biology: A systematic review

PLANT SCIENCE

IF4.1

2019-07-01

PREAI

Silva, Jose Cleydson F.; Teixeira, Ruan M.; Silva, Fabyano F.; Brommonschenkel, Sergio H.; Fontes, Elizabeth P. B.

Revisiting the Soybean GmNAC Superfamily

FRONTIERS IN PLANT SCIENCE

IF4.8

2018-12-18

OAAI

Melo, Bruno P.; Fraga, Otto T.; Silva, Jose Cleydson F.; Ferreira, Dalton O.; Brustolini, Otavio J. B.; Carpinetti, Paola A.; Machado, Joao Paulo B.; Reis, Pedro A. B.; Fontes, Elizabeth P. B.

AWW Domain-Containing Protein Forms Immune Nuclear Bodies against Begomoviruses

MOLECULAR PLANT

IF24.1

2018-12-01

OAAI

Calil, Iara P.; Quadros, Iana P. S.; Araujo, Thais C.; Duarte, Christiane E. M.; Gouveia-Mageste, Bianca C.; Silva, Jose Cleydson F.; Brustolini, Otavio J. B.; Teixeira, Ruan M.; Oliveira, Caue N.; Milagres, Rafael W. M. M.; Martins, Gilberto S.; Chory, Joanne; Reis, Pedro A. B.; Machado, Joao Paulo B.; Fontes, Elizabeth P. B.

Sugar metabolism and developmental stages of rubber tree (Hevea brasiliensis L.) seeds

PHYSIOLOGIA PLANTARUM

IF3.6

2017-12-12

OAAI

de Souza, Genaina Aparecida; Fernandes dos Santos Dias, Denise Cunha; Pimenta, Thaline Martins; Almeida, Andrea Lanna; de Toledo Picoli, Edgard Augusto; Alvarenga, Antonio de Padua; Ferreira da Silva, Jose Cleydson

Rama: a machine learning approach for ribosomal protein prediction in plants

SCIENTIFIC REPORTS

IF3.9

2017-11-24

OAAI

Mota Carvalho, Thales Francisco; Silva, Jose Cleydson F.; Calil, Iara Pinheiro; Batista Fontes, Elizabeth Pacheco; Cerqueira, Fabio Ribeiro

Genetic variability and population structure of the New World begomovirus Euphorbia yellow mosaic virus

JOURNAL OF GENERAL VIROLOGY

IF4.3

2017-06-01

OAAI

Mar, Talita Bernardon; Diniz Xavier, Cesar Augusto; Martins Lima, Alison Talis; Nogueira, Angelica Maria; Ferreira Silva, Jose Cleydson; Ramos-Sobrinho, Roberto; Lau, Douglas; Murilo Zerbini, F.

The diversification of begomovirus populations is predominantly driven by mutational dynamics

VIRUS EVOLUTION

IF4

2017-03-02

OAAI

Lima, Alison T. M.; Silva, Jose C. F.; Silva, Fabio N.; Castillo-Urquiza, Gloria P.; Silva, Fabyano F.; Seah, Yee M.; Mizubuti, Eduardo S. G.; Duffy, Siobain; Murilo Zerbini, F.

Functional and regulatory conservation of the soybean ER stress-induced DCD/ NRP-mediated cell death signaling in plants

BMC PLANT BIOLOGY

IF4.8

2016-07-12

OAAI

Reis, Pedro A. B.; Carpinetti, Paola A.; Freitas, Paula P. J.; Santos, Eulalio G. D.; Camargos, Luiz F.; Oliveira, Igor H. T.; Silva, Jose Cleydson F.; Carvalho, Humberto H.; Dal-Bianco, Maximiller; Soares-Ramos, Juliana R. L.; Fontes, Elizabeth P. B.

The Stress-Induced Soybean NAC Transcription Factor GmNAC81 Plays a Positive Role in Developmentally Programmed Leaf Senescence 胁迫诱导的大豆NAC转录因子GmNAC81在发育程序化叶片衰老中起积极作用

PLANT AND CELL PHYSIOLOGY

IF4

2016-03-25

OAAI

Pimenta, Maiana Reis; Silva, Priscila Alves; Mendes, Giselle Camargo; Alves, Janaina Roberta; Neves Caetano, Hanna Durso; Batista Machado, Joao Paulo; Bernardes Brustolini, Otavio Jose; Carpinetti, Paola Avelar; Melo, Bruno Paes; Ferreira Silva, Jose Cleydson; Rosado, Gustavo Leao; Silva Ferreira, Marcia Flores; Dal-Bianco, Maximillir; de Toledo Picoli, Edgard Augusto; Lima Aragao, Francisco Jose; Oliveira Ramos, Humberto Josue; Batista Fontes, Elizabeth Pacheco

Comprehensive analysis of the endoplasmic reticulum stress response in the soybean genome: conserved and plant-specific features

BMC GENOMICS

IF3.7

2015-10-14

OAAI

Silva, Priscila Alves; Silva, Jose Cleydson F.; Caetano, Hanna D. N.; Machado, Joao Paulo B.; Mendes, Giselle C.; Reis, Pedro A. B.; Brustolini, Otavio J. B.; Dal-Bianco, Maximiller; Fontes, Elizabeth P. B.

研究方向