Jeffrey K. Weber - Publications, H-index & Citations

Jeffrey K. Weber

ibm research

22H指数

51论文数

3.4K被引数

收录论文 35

发表时间

Quantum convolutional HLA immunogenic peptide prediction (Q-CHIPP): Next-generation neoantigen prediction with quantum neural network 量子卷积HLA免疫原性肽预测（Q-CHIPP）：基于量子神经网络的下一代新抗原预测

Science Advances

IF12.5

2026-07-24

OAAI

Ryan Peters; Kahn Rhrissorrakrai; Prerana Bangalore Parthasarathy; Vadim Ratner; Tanvi P. Gujarati; Meltem Tolunay; Jie Shi; Jeffrey K. Weber; Timothy A. Chan; Laxmi Parida; Sara Capponi; Filippo Utro; Tyler J. Alban

In-Pocket 3D Graphs Enhance Ligand–Target Compatibility in Generative Small-Molecule Creation: A Dopamine D2 Receptor Model System 口袋内3D图增强生成性小分子创建中的配体-靶点兼容性：多巴胺D2受体模型系统

The Journal of Physical Chemistry B

IF2.9

2026-03-04

PREAI

Seung-gu Kang; Jeffrey K. Weber; Joseph A. Morrone; Leili Zhang; Tien Huynh; Wendy D. Cornell

Leveraging large language models to predict antibody biological activity against influenza A hemagglutinin 利用大型语言模型预测针对甲型流感血凝素的抗体生物活性

COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL

IF4.1

2025-01-01

OAAI

Barkan, Ella; Siddiqui, Ibrahim; Cheng, Kevin J.; Golts, Alex; Shoshan, Yoel; Weber, Jeffrey K.; Mota, Yailin Campos; Ozery-Flato, Michal; Sautto, Giuseppe A.

Unsupervised and supervised AI on molecular dynamics simulations reveals complex characteristics of HLA-A2-peptide immunogenicity 分子动力学模拟的无监督和监督AI揭示了HLA-A2-peptide免疫原性的复杂特征

BRIEFINGS IN BIOINFORMATICS

IF7.7

2024-01-16

OAAI

Weber, Jeffrey K.; Morrone, Joseph A.; Kang, Seung-gu; Zhang, Leili; Lang, Lijun; Chowell, Diego; Krishna, Chirag; Huynh, Tien; Parthasarathy, Prerana; Luan, Binquan; Alban, Tyler J.; Cornell, Wendy D.; Chan, Timothy A.

Molecular basis of differential HLA class I-restricted T cell recognition of a highly networked HIV peptide

NATURE COMMUNICATIONS

IF15.7

2023-05-22

OAAI

Li, Xiaolong; Singh, Nishant Kumar; Collins, David R.; Ng, Robert; Zhang, Angela; Lamothe-Molina, Pedro A.; Shahinian, Peter; Xu, Shutong; Tan, Kemin; Piechocka-Trocha, Alicja; Urbach, Jonathan M.; Weber, Jeffrey K.; Gaiha, Gaurav D.; Mbah, Overbeck Christian Takou; Tien Huynh; Cheever, Sophia; Chen, James; Birnbaum, Michael; Zhou, Ruhong; Walker, Bruce D.; Wang, Jia-huai

Analysis of Training and Seed Bias in Small Molecules Generated with a Conditional Graph-Based Variational Autoencoder-Insights for Practical AI-Driven Molecule Generation

JOURNAL OF CHEMICAL INFORMATION AND MODELING

IF5.3

2022-02-07

OAAI

Kang, Seung-Gu; Morrone, Joseph A.; Weber, Jeffrey K.; Cornell, Wendy D.

Simplified, interpretable graph convolutional neural networks for small molecule activity prediction

JOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN

IF3.1

2021-11-24

OAAI

Weber, Jeffrey K.; Morrone, Joseph A.; Bagchi, Sugato; Pabon, Jan D. Estrada; Kang, Seung-gu; Zhang, Leili; Cornell, Wendy D.

In silico design and validation of high-affinity RNA aptamers targeting epithelial cellular adhesion molecule dimers

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

IF9.1

2020-03-31

OAAI

Bell, David R.; Weber, Jeffrey K.; Yin, Wang; Huynh, Tien; Duan, Wei; Zhou, Ruhong

T cell receptors for the HIV KK10 epitope from patients with differential immunologic control are functionally indistinguishable

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

IF9.1

2018-02-07

OAAI

Joglekar, Alok V.; Liu, Zhe; Weber, Jeffrey K.; Ouyang, Yong; Jeppson, John D.; Noh, Won Jun; Lamothe-Molina, Pedro A.; Chen, Huabiao; Kang, Seung-gu; Bethune, Michael T.; Zhou, Ruhong; Walker, Bruce D.; Baltimore, David

Rare Dissipative Transitions Punctuate the Initiation of Chemical Denaturation in Proteins

BIOPHYSICAL JOURNAL

IF3.1

2018-02-01

OAAI

Weber, Jeffrey K.; Kang, Seung-gu; Zhou, Ruhong

Molecular mechanism of Gd@C82(OH)22 increasing collagen expression: Implication for encaging tumor

BIOMATERIALS

IF12.9

2018-01-01

PREAI

Liu, Jing; Kang, Seung-gu; Wang, Peng; Wang, Yue; Lv, Xiaonan; Liu, Ying; Wang, Fei; Gu, Zonglin; Yang, Zaixing; Weber, Jeffrey K.; Tao, Ning; Qin, Zhihai; Miao, Qing; Chen, Chunying; Zhou, Ruhong; Zhao, Yuliang

Phosphatidylserine-Induced Conformational Modulation of Immune Cell Exhaustion-Associated Receptor TIM3

SCIENTIFIC REPORTS

IF3.9

2017-10-19

OAAI

Weber, Jeffrey K.; Zhou, Ruhong

Directional mechanical stability of Bacteriophage φ29 motor's 3WJ-pRNA: Extraordinary robustness along portal axis

SCIENCE ADVANCES

IF12.5

2017-05-05

OAAI

Xu, Zhonghe; Sun, Yang; Weber, Jeffrey K.; Cao, Yi; Wang, Wei; Jasinski, Daniel; Guo, Peixuan; Zhou, Ruhong; Li, Jingyuan

PEGylated graphene oxide elicits strong immunological responses despite surface passivation

NATURE COMMUNICATIONS

IF15.7

2017-02-24

177

OAAI

Luo, Nana; Weber, Jeffrey K.; Wang, Shuang; Luan, Binquan; Yue, Hua; Xi, Xiaobo; Du, Jing; Yang, Zaixing; Wei, Wei; Zhou, Ruhong; Ma, Guanghui

Graphene-Induced Pore Formation on Cell Membranes

SCIENTIFIC REPORTS

IF3.9

2017-02-20

126

OAAI

Duan, Guangxin; Zhang, Yuanzhao; Luan, Binquan; Weber, Jeffrey K.; Zhou, Royce W.; Yang, Zaixing; Zhao, Lin; Xu, Jiaying; Luo, Judong; Zhou, Ruhong

Opening Lids: Modulation of Lipase Immobilization by Graphene Oxides

ACS CATALYSIS

IF13.1

2016-06-22

147

PREAI

Mathesh, Motilal; Luan, Binquan; Akanbi, Taiwo O.; Weber, Jeffrey K.; Liu, Jingquan; Barrow, Colin J.; Zhou, Ruhong; Yang, Wenrong

Folding and Stabilization of Native-Sequence-Reversed Proteins

SCIENTIFIC REPORTS

IF3.9

2016-04-26

OAAI

Zhang, Yuanzhao; Weber, Jeffrey K.; Zhou, Ruhong

Single-Walled Carbon Nanotubes Inhibit the Cytochrome P450 Enzyme, CYP3A4

SCIENTIFIC REPORTS

IF3.9

2016-02-22

OAAI

El-Sayed, Ramy; Bhattacharya, Kunal; Gu, Zonglin; Yang, Zaixing; Weber, Jeffrey K.; Li, Hu; Leifer, Klaus; Zhao, Yichen; Toprak, Muhammet S.; Zhou, Ruhong; Fadeel, Bengt

Tunable, Strain-Controlled Nanoporous MoS2 Filter for Water Desalination 用于海水淡化的可调谐，应变控制的纳米多孔MoS2过滤器

ACS NANO

IF16

2016-01-27

231

PREAI

Li, Weifeng; Yang, Yanmei; Weber, Jeffrey K.; Zhang, Gang; Zhou, Ruhong

Sequential protein unfolding through a carbon nanotube pore

NANOSCALE

IF5.1

2016-01-01

PREAI

Xu, Zhonghe; Zhang, Shuang; Weber, Jeffrey K.; Luan, Binquan; Zhou, Ruhong; Li, Jingyuan

研究方向