Michael J. Stanhope - Publications, H-index & Citations

Michael J. Stanhope

Cornell University

58H指数

155论文数

1.3W被引数

收录论文 66

发表时间

Population and pan-genomic analyses of Staphylococcus pseudintermedius identify geographic distinctions in accessory gene content and novel loci associated with AMR 对金黄色葡萄球菌中间亚种（*Staphylococcus pseudintermedius*）进行种群和泛基因组分析，识别了附属基因内容的地域差异以及与AMR相关的新的基因位点。

APPLIED AND ENVIRONMENTAL MICROBIOLOGY

IF3.7

2025-05-21

OAAI

Zehr, Jordan D.; Sun, Qi; Ceres, Kristina; Merrill, Amy; Tyson, Gregory H.; Ceric, Olgica; Guag, Jake; Pauley, Sarah; Mcqueary, Holly C.; Sams, Kelly; Reboul, Guillaume; Mitchell, Patrick K.; Anderson, Renee; Franklin-Guild, Rebecca; Guarino, Cassandra; Cronk, Brittany D.; Burbick, Claire R.; Wolking, Rebecca; Peak, Laura; Zhang, Yan; McDowall, Rebeccah; Krishnamurthy, Aparna; Slavic, Durda; Sekhon, Prabhjot Kaur; Needle, David; Gibson, Robert; Cazer, Casey; Rodriguez, Jennifer; Harris, Beth; Stanhope, Michael J.; Goodman, Laura B.

Positive selection, genetic recombination, and intra-host evolution in novel equine coronavirus genomes and other members of the Embecovirus subgenus

MICROBIOLOGY SPECTRUM

IF3.8

2024-11-05

OAAI

Zehr, Jordan D.; Pond, Sergei L. Kosakovsky; Shank, Stephen D.; McQueary, Holly; Grenier, Jennifer K.; Whittaker, Gary R.; Stanhope, Michael J.; Goodman, Laura B.

Evolutionary genomic analyses of canine E. coli infections identify a relic capsular locus associated with resistance to multiple classes of antimicrobials

APPLIED AND ENVIRONMENTAL MICROBIOLOGY

IF3.7

2024-08-21

OAAI

Ceres, Kristina; Zehr, Jordan D.; Murrell, Chloe; Millet, Jean K.; Sun, Qi; Mcqueary, Holly C.; Horton, Alanna; Cazer, Casey; Sams, Kelly; Reboul, Guillaume; Andreopoulos, William B.; Mitchell, Patrick K.; Anderson, Renee; Franklin-Guild, Rebecca; Cronk, Brittany D.; Stanhope, Bryce J.; Burbick, Claire R.; Wolking, Rebecca; Peak, Laura; Zhang, Yan; Mcdowall, Rebeccah; Krishnamurthy, Aparna; Slavic, Durda; Sekhon, Prabhjot kaur; Tyson, Gregory H.; Ceric, Olgica; Stanhope, Michael J.; Goodman, Laura B.

Detection and characterization of novel luchacoviruses, genus Alphacoronavirus, in saliva and feces of meso-carnivores in the northeastern United States

JOURNAL OF VIROLOGY

IF3.8

2023-11-30

OAAI

Olarte-Castillo, Ximena A.; Plimpton, Laura; McQueary, Holly; Sun, Yining; Yu, Y. Tina; Cover, Sarah; Richardson, Amy N.; Jin, Yuhan; Grenier, Jennifer K.; Cummings, Kevin J.; Bunting, Elizabeth; Diuk-Wasser, Maria; Needle, David; Schuler, Krysten; Stanhope, Michael J.; Whittaker, Gary; Goodman, Laura B.

Natural selection differences detected in key protein domains between non-pathogenic and pathogenic feline coronavirus phenotypes

VIRUS EVOLUTION

IF4

2023-03-15

OAAI

Zehr, Jordan D.; Kosakovsky Pond, Sergei L.; Millet, Jean K.; Olarte-Castillo, Ximena A.; Lucaci, Alexander G.; Shank, Stephen D.; Ceres, Kristina M.; Choi, Annette; Whittaker, Gary R.; Goodman, Laura B.; Stanhope, Michael J.

A critical evaluation of Mycobacterium bovis pangenomics, with reference to its utility in outbreak investigation

MICROBIAL GENOMICS

IF4

2022-06-30

OAAI

Ceres, Kristina M.; Stanhope, Michael J.; Grohn, Yrjo T.

Conserved recombination patterns across coronavirus subgenera

VIRUS EVOLUTION

IF4

2022-06-14

OAAI

de Klerk, Arne; Swanepoel, Phillip; Lourens, Rentia; Zondo, Mpumelelo; Abodunran, Isaac; Lytras, Spyros; MacLean, Oscar A.; Robertson, David; Kosakovsky Pond, Sergei L.; Zehr, Jordan D.; Kumar, Venkatesh; Stanhope, Michael J.; Harkins, Gordon; Murrell, Ben; Martin, Darren P.

Recent Zoonotic Spillover and Tropism Shift of a Canine Coronavirus Is Associated with Relaxed Selection and Putative Loss of Function in NTD Subdomain of Spike Protein

VIRUSES-BASEL

IF3.5

2022-04-21

OAAI

Zehr, Jordan D.; Pond, Sergei L. Kosakovsky; Martin, Darren P.; Ceres, Kristina; Whittaker, Gary R.; Millet, Jean K.; Goodman, Laura B.; Stanhope, Michael J.

Furin cleavage sites in the spike proteins of bat and rodent coronaviruses: Implications for virus evolution and zoonotic transfer from rodent species

ONE HEALTH

IF4.5

2021-12-01

OAAI

Stout, Alison E.; Millet, Jean K.; Stanhope, Michael J.; Whittaker, Gary R.

Genomic Assessment of Global Population Structure in a Highly Migratory and Habitat Versatile Apex Predator, the Tiger Shark (Galeocerdo cuvier)

JOURNAL OF HEREDITY

IF2.5

2021-08-10

PREAI

Bernard, Andrea M.; Finnegan, Kimberly A.; Bitar, Paulina Pavinski; Stanhope, Michael J.; Shivji, Mahmood S.

Evolutionary Genomic and Bacterial Genome-Wide Association Study of Mycobacterium avium subsp. paratuberculosis and Dairy Cattle Johne's Disease Phenotypes

APPLIED AND ENVIRONMENTAL MICROBIOLOGY

IF3.7

2021-03-26

OAAI

Richards, Vincent P.; Nigsch, Annette; Bitar, Paulina Pavinski; Sun, Qi; Stuber, Tod; Ceres, Kristina; Smith, Rebecca L.; Austerman, Suelee Robbe; Schukken, Ynte; Grohn, Yrjo T.; Stanhope, Michael J.

Population Gene Introgression and High Genome Plasticity for the Zoonotic Pathogen Streptococcus agalactiae

MOLECULAR BIOLOGY AND EVOLUTION

IF5.3

2019-07-25

OAAI

Richards, Vincent P.; Velsko, Irina M.; Alam, Md Tauqeer; Zadoks, Ruth N.; Manning, Shannon D.; Bitar, Paulina D. Pavinski; Hassler, Hayley B.; Crestani, Chiara; Springer, Garrett H.; Probert, Brett M.; Town, Christopher D.; Stanhope, Michael J.

White shark genome reveals ancient elasmobranch adaptations associated with wound healing and the maintenance of genome stability 白鲨基因组揭示了与伤口愈合和维持基因组稳定性相关的古代弹性分支适应

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

IF9.1

2019-02-19

OAAI

Marra, Nicholas J.; Stanhope, Michael J.; Jue, Nathaniel K.; Wang, Minghui; Sun, Qi; Bitar, Paulina Pavinski; Richards, Vincent P.; Komissarov, Aleksey; Rayko, Mike; Kliver, Sergey; Stanhope, Bryce J.; Winkler, Chuck; O'Brien, Stephen J.; Antunes, Agostinho; Jorgensen, Salvador; Shivji, Mahmood S.

Transcriptome-Derived Microsatellites Demonstrate Strong Genetic Differentiation in Pacific White Sharks

JOURNAL OF HEREDITY

IF2.5

2018-09-11

OAAI

Bernard, Andrea M.; Richards, Vincent P.; Stanhope, Michael J.; Shivji, Mahmood S.

Comparative transcriptomics of elasmobranchs and teleosts highlight important processes in adaptive immunity and regional endothermy

BMC GENOMICS

IF3.7

2017-01-30

OAAI

Marra, Nicholas J.; Richards, Vincent P.; Early, Angela; Bogdanowicz, Steve M.; Bitar, Paulina D. Pavinski; Stanhope, Michael J.; Shivji, Mahmood S.

Blastocystis Mitochondrial Genomes Appear to Show Multiple Independent Gains and Losses of Start and Stop Codons

GENOME BIOLOGY AND EVOLUTION

IF2.8

2016-11-03

OAAI

Jacob, Alison S.; Andersen, Lee O'Brien; Bitar, Paulina Pavinski; Richards, Vincent P.; Shah, Sarah; Stanhope, Michael J.; Stensvold, C. Rune; Clark, C. Graham

Diverse sampling of East African haemosporidians reveals chiropteran origin of malaria parasites in primates and rodents

MOLECULAR PHYLOGENETICS AND EVOLUTION

IF3.6

2016-06-01

PREAI

Lutz, Holly L.; Patterson, Bruce D.; Peterhans, Julian C. Kerbis; Stanley, William T.; Webala, Paul W.; Gnoske, Thomas P.; Hackett, Shannon J.; Stanhope, Michael J.

Genome Content and Phylogenomics Reveal both Ancestral and Lateral Evolutionary Pathways in Plant-Pathogenic Streptomyces Species

APPLIED AND ENVIRONMENTAL MICROBIOLOGY

IF3.7

2016-04-01

OAAI

Huguet-Tapia, Jose C.; Lefebure, Tristan; Badger, Jonathan H.; Guan, Dongli; Pettis, Gregg S.; Stanhope, Michael J.; Loria, Rosemary

Phylogenomics and the Dynamic Genome Evolution of the Genus Streptococcus

GENOME BIOLOGY AND EVOLUTION

IF2.8

2014-03-12

118

OAAI

Richards, Vincent P.; Palmer, Sara R.; Bitar, Paulina D. Pavinski; Qin, Xiang; Weinstock, George M.; Highlander, Sarah K.; Town, Christopher D.; Burne, Robert A.; Stanhope, Michael J.

Transcriptomic and genomic evidence for Streptococcus agalactiae adaptation to the bovine environment

BMC GENOMICS

IF3.7

2013-12-27

OAAI

Richards, Vincent P.; Choi, Sang Chul; Bitar, Paulina D. Pavinski; Gurjar, Abhijit A.; Stanhope, Michael J.

研究方向