Claude W. dePamphilis - Publications, H-index & Citations

Claude W. dePamphilis

the pennsylvania state university

82H指数

227论文数

3.7W被引数

收录论文 89

发表时间

The floral ABCs of Hydnora, one of the most bizarre parasitic plants in the world, and its autotrophic relatives of the order Piperales 齿瓣薯蓣（Hydnora）作为世界上最奇特的寄生植物之一，其花部的ABC模型及其同属胡椒目（Piperales）的自养近缘种。

EvoDevo

IF3.6

2025-10-04

OAAI

Natalia Pabón-Mora; Favio González; Claude W. dePamphilis; Jay F. Bolin; Christoph Neinhuis; Juan F. Alzate; Stefan Wanke

Chromosome level assembly and annotation of Cuscuta campestris Yunck. (field dodder), a model parasitic plant 染色体水平基因组组装与注释：以模型寄生植物Cuscuta campestris Yunck.（田野菟丝子）为例

G3-GENES GENOMES GENETICS

IF2.2

2025-09-01

OAAI

Cerda-Herrera, Juan D.; Zhang, Huiting; Wafula, Eric K.; Adhikari, Supral; Park, So-Yon; Carey, Sarah B.; Harkess, Alex; Ralph, Paula E.; Westwood, James H.; Axtell, Michael J.; dePamphilis, Claude W.

The cacao gene atlas: a transcriptome developmental atlas reveals highly tissue-specific and dynamically-regulated gene networks in Theobroma cacao L 可可基因图谱: 转录组发育图谱揭示了可可碱中高度组织特异性和动态调控的基因网络

BMC PLANT BIOLOGY

IF4.8

2024-06-26

OAAI

Kulesza, Evelyn; Thomas, Patrick; Prewitt, Sarah F.; Shalit-Kaneh, Akiva; Wafula, Eric; Knollenberg, Benjamin; Winters, Noah; Esteban, Eddi; Pasha, Asher; Provart, Nicholas; Praul, Craig; Landherr, Lena; dePamphilis, Claude; Maximova, Siela N.; Guiltinan, Mark J.

variations and reduction of plastome are associated with the evolution of parasitism in Convolvulaceae (vol 114, 40, 2024)

PLANT MOLECULAR BIOLOGY

IF3.8

2024-05-14

OAAI

Chen, Li-Qiong; Li, Xin; Yao, Xin; Li, De-Zhu; Barrett, Craig; dePamphilis, Claude W.; Yu, Wen-Bin

Variations and reduction of plastome are associated with the evolution of parasitism in Convolvulaceae

PLANT MOLECULAR BIOLOGY

IF3.8

2024-04-15

PREAI

Chen, Li-Qiong; Li, Xin; Yao, Xin; Li, De-Zhu; Barrett, Craig; Depamphilis, Claude W.; Yu, Wen-Bin

Extra-large G proteins have extra-large effects on agronomic traits and stress tolerance in maize and rice

TRENDS IN PLANT SCIENCE

IF20.8

2023-09-01

OAAI

Cantos, Christian F.; Depamphilis, Claude W.; Assmann, Sarah M.

De novo Assembly and Comparative Analyses of Mitochondrial Genomes in Piperales

GENOME BIOLOGY AND EVOLUTION

IF2.8

2023-03-10

OAAI

Yu, Runxian; Chen, Xudong; Long, Lingjie; Jost, Matthias; Zhao, Ran; Liu, Lumei; Mower, Jeffrey P.; dePamphilis, Claude W.; Wanke, Stefan; Jiao, Yuannian

PlantTribes2: Tools for comparative gene family analysis in plant genomics

FRONTIERS IN PLANT SCIENCE

IF4.8

2023-01-31

OAAI

Wafula, Eric K. K.; Zhang, Huiting; Von Kuster, Gregory; Leebens-Mack, James H. H.; Honaas, Loren A. A.; dePamphilis, Claude W. W.

Phylotranscriptomic Analyses of Mycoheterotrophic Monocots Show a Continuum of Convergent Evolutionary Changes in Expressed Nuclear Genes From Three Independent Nonphotosynthetic Lineages

GENOME BIOLOGY AND EVOLUTION

IF2.8

2022-12-30

OAAI

Timilsena, Prakash Raj; Barrett, Craig F.; Pineyro-Nelson, Alma; Wafula, Eric K.; Ayyampalayam, Saravanaraj; McNeal, Joel R.; Yukawa, Tomohisa; Givnish, Thomas J.; Graham, Sean W.; Pires, J. Chris; Davis, Jerrold, I; Ane, Cecile; Stevenson, Dennis W.; Leebens-Mack, Jim; Martinez-Salas, Esteban; alvarez-Buylla, Elena R.; dePamphilis, Claude W.

Phylogenomic resolution of order- and family-level monocot relationships using 602 single-copy nuclear genes and 1375 BUSCO genes

FRONTIERS IN PLANT SCIENCE

IF4.8

2022-11-22

OAAI

Timilsena, Prakash Raj; Wafula, Eric K.; Barrett, Craig F.; Ayyampalayam, Saravanaraj; McNeal, Joel R.; Rentsch, Jeremy D.; McKain, Michael R.; Heyduk, Karolina; Harkess, Alex; Villegente, Matthieu; Conran, John G.; Illing, Nicola; Fogliani, Bruno; Ane, Cecile; Pires, J. Chris; Davis, Jerrold, I; Zomlefer, Wendy B.; Stevenson, Dennis W.; Graham, Sean W.; Givnish, Thomas J.; Leebens-Mack, James; DePamphilis, Claude W.

Building a foundation for gene family analysis in Rosaceae genomes with a novel workflow: A case study in Pyrus architecture genes 以新颖的工作流程为蔷薇科基因组中的基因家族分析奠定基础: 以梨属结构基因为例

FRONTIERS IN PLANT SCIENCE

IF4.8

2022-11-14

OAAI

Zhang, Huiting; Wafula, Eric K.; Eilers, Jon; Harkess, Alex E.; Ralph, Paula E.; Timilsena, Prakash Raj; dePamphilis, Claude W.; Waite, Jessica M.; Honaas, Loren A.

Pervasive Phylogenomic Incongruence Underlies Evolutionary Relationships in Eyebrights (Euphrasia, Orobanchaceae)

FRONTIERS IN PLANT SCIENCE

IF4.8

2022-05-27

OAAI

Garrett, Phen; Becher, Hannes; Gussarova, Galina; dePamphilis, Claude W.; Ness, Rob W.; Gopalakrishnan, Shyam; Twyford, Alex D.

Insights into angiosperm evolution, floral development and chemical biosynthesis from the Aristolochia fimbriata genome

NATURE PLANTS

IF13.6

2021-09-02

OAAI

Qin, Liuyu; Hu, Yiheng; Wang, Jinpeng; Wang, Xiaoliang; Zhao, Ran; Shan, Hongyan; Li, Kunpeng; Xu, Peng; Wu, Hanying; Yan, Xueqing; Liu, Lumei; Yi, Xin; Wanke, Stefan; Bowers, John E.; Leebens-Mack, James H.; DePamphilis, Claude W.; Soltis, Pamela S.; Soltis, Douglas E.; Kong, Hongzhi; Jiao, Yuannian

Genomic structural variants constrain and facilitate adaptation in natural populations of Theobroma cacao, the chocolate tree

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

IF9.1

2021-08-18

OAAI

Hamala, Tuomas; Wafula, Eric K.; Guiltinan, Mark J.; Ralph, Paula E.; dePamphilis, Claude W.; Tiffin, Peter

Transcriptomics of Differential Ripening in 'd'Anjou' Pear (Pyrus communis L.)

FRONTIERS IN PLANT SCIENCE

IF4.8

2021-06-16

OAAI

Honaas, Loren; Hargarten, Heidi; Hadish, John; Ficklin, Stephen P.; Serra, Sara; Musacchi, Stefano; Wafula, Eric; Mattheis, James; dePamphilis, Claude W.; Rudell, David

The geography of parasite local adaptation to host communities

ECOGRAPHY

IF4.7

2021-05-16

OAAI

Bellis, Emily S.; McLaughlin, Chloee M.; dePamphilis, Claude W.; Lasky, Jesse R.

GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomes GetOrganelle: 用于准确从头组装细胞器基因组的快速多功能工具包

GENOME BIOLOGY

IF9.4

2020-09-10

2.1K

OAAI

Jin, Jian-Jun; Yu, Wen-Bin; Yang, Jun-Bo; Song, Yu; dePamphilis, Claude W.; Yi, Ting-Shuang; Li, De-Zhu

Genomics of sorghum local adaptation to a parasitic plant

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

IF9.1

2020-02-11

OAAI

Bellis, Emily S.; Kelly, Elizabeth A.; Lorts, Claire M.; Gao, Huirong; DeLeo, Victoria L.; Rouhan, Germinal; Budden, Andrew; Bhaskara, Govinal B.; Hu, Zhenbin; Muscarella, Robert; Timko, Michael P.; Nebie, Baloua; Runo, Steven M.; Chilcoat, N. Doane; Juenger, Thomas E.; Morris, Geoffrey P.; dePamphilis, Claude W.; Lasky, Jesse R.

Compensatory sequence variation between trans-species small RNAs and their target sites

ELIFE

IF0

2019-12-17

OAAI

Johnson, Nathan R.; dePamphilis, Claude W.; Axtell, Michael J.

Gene Expression Modularity Reveals Footprints of Polygenic Adaptation in Theobroma cacao

MOLECULAR BIOLOGY AND EVOLUTION

IF5.3

2019-09-12

OAAI

Hamala, Tuomas; Guiltinan, Mark J.; Marden, James H.; Maximova, Siela N.; dePamphilis, Claude W.; Tiffin, Peter

研究方向