Richard D. Smith - Publications, H-index & Citations

Richard D. Smith

university of michigan system

17H指数

38论文数

1.7K被引数

收录论文 18

发表时间

Sunsetting Binding MOAD with its last data update and the addition of 3D-ligand polypharmacology tools

SCIENTIFIC REPORTS

IF3.9

2023-02-21

OAAI

Wagle, Swapnil; Smith, Richard D.; Dominic III, Anthony J.; DasGupta, Debarati; Tripathi, Sunil Kumar; Carlson, Heather A.

Argonaute 2 modulates EGFR-RAS signaling to promote mutant HRAS and NRAS-driven malignancies

PNAS NEXUS

IF3.8

2022-07-28

OAAI

Siebenaler, Ronald F.; Chugh, Seema; Waninger, Jessica J.; Dommeti, Vijaya L.; Kenum, Carson; Mody, Malay; Gautam, Anudeeta; Patel, Nidhi; Chu, Alec; Bawa, Pushpinder; Hon, Jennifer; Smith, Richard D.; Carlson, Heather; Cao, Xuhong; Tesmer, John J. G.; Shankar, Sunita; Chinnaiyan, Arul M.

Profiling the Cytochrome P450 2J2 Active Site

FASEB JOURNAL

IF4.2

2022-05-13

PREAI

Motl, Nicole; Smith, Richard D.; Carlson, Heather A.; Scott, Emily E.

Identification of Cryptic Binding Sites Using MixMD with Standard and Accelerated Molecular Dynamics

JOURNAL OF CHEMICAL INFORMATION AND MODELING

IF5.3

2021-02-18

OAAI

Smith, Richard D.; Carlson, Heather A.

An essential role for Argonaute 2 in mouse models of KRAS-driven cancers

CANCER RESEARCH

IF16.6

2019-07-01

PREAI

Shankar, Sunita; Tien, Jean Ching-Yi; Siebenaler, Ronald F.; Dommeti, Vijaya L.; Zelenka-Wang, Sylvia; Waninger, Jessica; Juckette, Kristin M.; Xu, Alice; Wang, Xiao-Ming; Chugh, Seema; Mody, Malay; Eyunni, Sanjana; Goodrum, Andrew; Tsaloff, Grace; Zhang, Yuping; Apel, Ingrid J.; Siddiqui, Javed; Smith, Richard D.; Carlson, Heather A.; Tesmer, John; Cao, Xuhong; Shi, Jiaqi; Kumar-Sinha, Chandan; Chinnaiyan, Arul M.

Predicting Displaceable Water Sites Using Mixed-Solvent Molecular Dynamics

JOURNAL OF CHEMICAL INFORMATION AND MODELING

IF5.3

2018-01-16

OAAI

Graham, Sarah E.; Smith, Richard D.; Carlson, Heather A.

CSAR 2014: A Benchmark Exercise Using Unpublished Data from Pharma

JOURNAL OF CHEMICAL INFORMATION AND MODELING

IF5.3

2016-05-17

OAAI

Carlson, Heather A.; Smith, Richard D.; Damm-Ganamet, Kelly L.; Stuckey, Jeanne A.; Ahmed, Aqeel; Convery, Maire A.; Somers, Donald O.; Kranz, Michael; Elkins, Patricia A.; Cui, Guanglei; Peishoff, Catherine E.; Lambert, Millard H.; Dunbar, James B., Jr.

CSAR Benchmark Exercise 2013: Evaluation of Results from a Combined Computational Protein Design, Docking, and Scoring/Ranking Challenge

JOURNAL OF CHEMICAL INFORMATION AND MODELING

IF5.3

2015-10-09

OAAI

Smith, Richard D.; Damm-Ganamet, Kelly L.; Dunbar, James B., Jr.; Ahmed, Aqeel; Chinnaswamy, Krishnapriya; Delproposto, James E.; Kubish, Ginger M.; Tinberg, Christine E.; Khare, Sagar D.; Dou, Jiayi; Doyle, Lindsey; Stuckey, Jeanne A.; Baker, David; Carlson, Heather A.

Recent improvements to Binding MOAD: a resource for protein-ligand binding affinities and structures

NUCLEIC ACIDS RESEARCH

IF13.1

2014-11-06

OAAI

Ahmed, Aqeel; Smith, Richard D.; Clark, Jordan J.; Dunbar, James B., Jr.; Carlson, Heather A.

CSAR Data Set Release 2012: Ligands, Affinities, Complexes, and Docking Decoys

JOURNAL OF CHEMICAL INFORMATION AND MODELING

IF5.3

2013-05-10

OAAI

Dunbar, James B., Jr.; Smith, Richard D.; Damm-Ganamet, Kelly L.; Ahmed, Aqeel; Esposito, Emilio Xavier; Delproposto, James; Chinnaswamy, Krishnapriya; Kang, You-Na; Kubish, Ginger; Gestwicki, Jason E.; Stuckey, Jeanne A.; Carlson, Heather A.

CSAR Benchmark Exercise 2011-2012: Evaluation of Results from Docking and Relative Ranking of Blinded Congeneric Series

JOURNAL OF CHEMICAL INFORMATION AND MODELING

IF5.3

2013-05-10

124

OAAI

Damm-Ganamet, Kelly L.; Smith, Richard D.; Dunbar, James B., Jr.; Stuckey, Jeanne A.; Carlson, Heather A.

Biophysical Limits of Protein-Ligand Binding 蛋白质-配体结合的生物物理极限

JOURNAL OF CHEMICAL INFORMATION AND MODELING

IF5.3

2012-07-18

OAAI

Smith, Richard D.; Engdahl, Alaina L.; Dunbar, James B., Jr.; Carlson, Heather A.

The BJGP

BRITISH JOURNAL OF GENERAL PRACTICE

IF5.2

2012-05-01

OAAI

Smith, Richard

CSAR Benchmark Exercise of 2010: Combined Evaluation Across All Submitted Scoring Functions

JOURNAL OF CHEMICAL INFORMATION AND MODELING

IF5.3

2011-08-29

120

OAAI

Smith, Richard D.; Dunbar, James B., Jr.; Ung, Peter Man-Un; Esposito, Emilio X.; Yang, Chao-Yie; Wang, Shaomeng; Carlson, Heather A.

CSAR Benchmark Exercise of 2010: Selection of the Protein-Ligand Complexes (vol 51, pg 2036, 2011)

JOURNAL OF CHEMICAL INFORMATION AND MODELING

IF5.3

2011-08-19

OAAI

Dunbar, James B., Jr.; Smith, Richard D.; Yang, Chao-Yie; Ung, Peter Man-Un; Lexa, Katrina W.; Khazanov, Nickolay A.; Stuckey, Jeanne A.; Wang, Shaomeng; Carlson, Heather A.

CSAR Benchmark Exercise of 2010: Selection of the Protein-Ligand Complexes

JOURNAL OF CHEMICAL INFORMATION AND MODELING

IF5.3

2011-07-22

141

OAAI

Dunbar, James B., Jr.; Smith, Richard D.; Yang, Chao-Yie; Ung, Peter Man-Un; Lexa, Katrina W.; Khazanov, Nickolay A.; Stuckey, Jeanne A.; Wang, Shaomeng; Carlson, Heather A.

Differences between High- and Low-Affinity Complexes of Enzymes and Nonenzymes

JOURNAL OF MEDICINAL CHEMISTRY

IF6.8

2008-10-01

OAAI

Carlson, Heather A.; Smith, Richard D.; Khazanov, Nickolay A.; Kirchhoff, Paul D.; Dunbar, Jarnes B., Jr.; Benson, Mark L.

Binding MOAD (Mother of All Databases)绑定MOAD (所有数据库之母)

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

IF2.8

2005-06-21

263

OAAI

Hu, LG; Benson, ML; Smith, RD; Lerner, MG; Carlson, HA

研究方向