David Pérahia - Publications, H-index & Citations

David Pérahia

Universite Paris Saclay

49H指数

214论文数

6.6K被引数

收录论文 66

发表时间

Extended Sampling of Macromolecular Conformations from Uniformly Distributed Points on Multidimensional Normal Mode Hyperspheres

JOURNAL OF CHEMICAL THEORY AND COMPUTATION

IF5.5

2024-12-12

OAAI

S. Gomes, Antoniel A.; Costa, Mauricio G. S.; Louet, Maxime; Floquet, Nicolas; Bisch, Paulo M.; Perahia, David

MDFF_NM: Improved Molecular Dynamics Flexible Fitting into Cryo-EM Density Maps with a Multireplica Normal Mode-Based Search

JOURNAL OF CHEMICAL INFORMATION AND MODELING

IF5.3

2024-06-22

OAAI

Dahmani, Zakaria L.; Scott, Ana Ligia; Venien-Bryan, Catherine; Perahia, David; Costa, Mauricio G. S.

Assessment of Efficacy and Safety of Zagotenemab

NEUROLOGY

IF8.5

2024-03-12

OAAI

Fleisher, Adam S.; Munsie, Leanne M.; Perahia, David G. S.; Andersen, Scott W.; Higgins, Ixavier A.; Hauck, Paula M.; Lo, Albert C.; Sims, John R.; Brys, Miroslaw; Mintun, Mark

Small GTPase Ran: Depicting the nucleotide-specific conformational landscape of the functionally important C-terminus

FRONTIERS IN MOLECULAR BIOSCIENCES

IF4

2023-01-16

OAAI

Czigleczki, Janka; De Resende Lara, Pedro Tulio; Dudas, Balint; Jang, Hyunbum; Perahia, David; Nussinov, Ruth; Balog, Erika

MDexciteR: Enhanced Sampling Molecular Dynamics by Excited Normal Modes or Principal Components Obtained from Experiments

JOURNAL OF CHEMICAL THEORY AND COMPUTATION

IF5.5

2023-01-09

PREAI

Costa, Mauricio G. S.; Batista, Paulo R.; Gomes, Antoniel; Bastos, Leonardo S.; Louet, Maxime; Floquet, Nicolas; Bisch, Paulo M.; Perahia, David

Cryo-electron microscopy unveils unique structural features of the human Kir2.1 channel

SCIENCE ADVANCES

IF12.5

2022-09-23

OAAI

Fernandes, Carlos A. H.; Zuniga, Dania; Fagnen, Charline; Kugler, Valerie; Scala, Rosa; Pehau-Arnaudet, Gerard; Wagner, Renaud; Perahia, David; Bendahhou, Said; Venien-Bryan, Catherine

Editorial: Integrative Structural Biology of Proteins and Macromolecular Assemblies: Bridging Experiments and Simulations

FRONTIERS IN MOLECULAR BIOSCIENCES

IF4

2022-06-27

OAAI

Batista, Paulo Ricardo; Oliveira Neto, Mario; Perahia, David

Sampling of Protein Conformational Space Using Hybrid Simulations: A Critical Assessment of Recent Methods

FRONTIERS IN MOLECULAR BIOSCIENCES

IF4

2022-02-04

OAAI

Kaynak, Burak T.; Krieger, James M.; Dudas, Balint; Dahmani, Zakaria L.; Costa, Mauricio G. S.; Balog, Erika; Scott, Ana Ligia; Doruker, Pemra; Perahia, David; Bahar, Ivet

Concerted conformational dynamics and water movements in the ghrelin G protein-coupled receptor

ELIFE

IF0

2021-09-03

OAAI

Louet, Maxime; Casiraghi, Marina; Damian, Marjorie; Costa, Mauricio G. S.; Renault, Pedro; Gomes, Antoniel A. S.; Batista, Paulo R.; M'Kadmi, Celine; Mary, Sophie; Cantel, Sonia; Denoyelle, Severine; Salah, Khoubaib Ben Haj; Perahia, David; Bisch, Paulo M.; Fehrentz, Jean-Alain; Catoire, Laurent J.; Floquet, Nicolas; Baneres, Jean-Louis

Insights into the substrate binding mechanism of SULT1A1 through molecular dynamics with excited normal modes simulations

SCIENTIFIC REPORTS

IF3.9

2021-06-23

OAAI

Dudas, Balint; Toth, Daniel; Perahia, David; Nicot, Arnaud B.; Balog, Erika; Miteva, Maria A.

Unexpected Gating Behaviour of an Engineered Potassium Channel Kir

FRONTIERS IN MOLECULAR BIOSCIENCES

IF4

2021-06-10

OAAI

Fagnen, Charline; Bannwarth, Ludovic; Zuniga, Dania; Oubella, Iman; De Zorzi, Rita; Forest, Eric; Scala, Rosa; Guilbault, Samuel; Bendahhou, Said; Perahia, David; Venien-Bryan, Catherine

Multimolecular complexes of the phosphodiester anion with Zn(II) or Mg(II) and water molecules-Preliminary validations of a polarizable potential by ab initio quantum chemistry

JOURNAL OF COMPUTATIONAL CHEMISTRY

IF4.8

2021-06-08

PREAI

Gresh, Nohad; Perahia, David

Revealing the activation mechanism of autoinhibited RalF by integrated simulation and experimental approaches

SCIENTIFIC REPORTS

IF3.9

2021-05-12

OAAI

Dudas, Balint; Perahia, David; Balog, Erika

Towards gaining sight of multiscale events: utilizing network models and normal modes in hybrid methods

CURRENT OPINION IN STRUCTURAL BIOLOGY

IF7

2020-10-01

OAAI

Krieger, James M.; Doruker, Pemra; Scott, Ana Ligia; Perahia, David; Bahar, Ivet

The allosteric activation mechanism of a phospholipase A2-like toxin from Bothrops jararacussu venom: a dynamic description

SCIENTIFIC REPORTS

IF3.9

2020-10-01

OAAI

Gomes, Antoniel A. S.; Cardoso, Fabio F.; Souza, Maximilia F.; Oliveira, Cristiano L. P.; Perahia, David; Magro, Angelo J.; Fontes, Marcos R. M.

Nucleotide-Specific Autoinhibition of Full-Length K-Ras4B Identified by Extensive Conformational Sampling

FRONTIERS IN MOLECULAR BIOSCIENCES

IF4

2020-07-10

OAAI

Dudas, Balint; Merzel, Franci; Jang, Hyunbum; Nussinov, Ruth; Perahia, David; Balog, Erika

New Structural insights into Kir channel gating from molecular simulations, HDX-MS and functional studies

SCIENTIFIC REPORTS

IF3.9

2020-05-21

OAAI

Fagnen, Charline; Bannwarth, Ludovic; Oubella, Iman; Forest, Eric; De Zorzi, Rita; de Araujo, Aline; Mhoumadi, Yasmina; Bendahhou, Said; Perahia, David; Venien-Bryan, Catherine

Factors influencing depression endpoints research (FINDER): Study design and population characteristics

EUROPEAN PSYCHIATRY

IF6.7

2020-04-16

OAAI

Garcia-Cebrian, Ana; Bauer, Michael; Montejo, Angel L.; Dantchev, Nicolas; Demyttenaere, Koen; Gandhi, Paul; Grassi, Luigi; Monz, Brigitta U.; Perahia, David G. S.; Quail, Deborah; Tylee, Andre

Duloxetine in the treatment of major depressive disorder: a placebo- and paroxetine-controlled trial

EUROPEAN PSYCHIATRY

IF6.7

2020-04-16

117

PREAI

Perahia, D. G. S.; Wang, F.; Mallinckrodt, C. H.; Walker, D. J.; Detke, M. J.

Prescribing patterns of antidepressants in europe: Results from the Factors Influencing Depression Endpoints Research (FINDER) study

EUROPEAN PSYCHIATRY

IF6.7

2020-04-16

143

OAAI

Bauer, Michael; Monz, Brigitta U.; Montejo, Angel L.; Quail, Deborah; Dantchev, Nicolas; Dernyttenaere, Koen; Garcia-Cebrian, Ana; Grassi, Luigi; Perahia, David G. S.; Reed, Catherine; Tylee, Andre

研究方向