Hisashi Miura - Publications, H-index & Citations

Hisashi Miura

RIKEN Center for Biosystems Dynamics Research

22H指数

108论文数

1.9K被引数

收录论文 26

发表时间

scRepli-RamDA-seq: a multi-omics technology enabling the analysis of gene expression dynamics during S-phase scRepli-RamDA-seq：一种多组学技术，可实现对S期基因表达动态的分析

Nature Communications

IF15.7

2025-12-15

OAAI

Rawin Poonperm; Taiki Yoneda; Taito Imada; Saori Takahashi; Takako Ichinose; Hisashi Miura; Tetsutaro Hayashi; Mariko Kuse; Mika Yoshimura; Koji Nagao; Chikashi Obuse; Itoshi Nikaido; Ichiro Hiratani; Shin-ichiro Takebayashi

Structure and dynamics of nuclear A/B compartments and subcompartments

CURRENT OPINION IN CELL BIOLOGY

IF4.3

2024-10-01

OAAI

Oji, Asami; Choubani, Linda; Miura, Hisashi; Hiratani, Ichiro

Replication dynamics identifies the folding principles of the inactive X chromosome

NATURE STRUCTURAL & MOLECULAR BIOLOGY

IF10.1

2023-08-10

OAAI

Poonperm, Rawin; Ichihara, Saya; Miura, Hisashi; Tanigawa, Akie; Nagao, Koji; Obuse, Chikashi; Sado, Takashi; Hiratani, Ichiro

Epigenetic plasticity safeguards heterochromatin configuration in mammals 表观遗传可塑性保护哺乳动物的异染色质构型

NUCLEIC ACIDS RESEARCH

IF13.1

2023-05-13

OAAI

Fukuda, Kei; Shimi, Takeshi; Shimura, Chikako; Ono, Takao; Suzuki, Takehiro; Onoue, Kenta; Okayama, Satoko; Miura, Hisashi; Hiratani, Ichiro; Ikeda, Kazuho; Okada, Yasushi; Dohmae, Naoshi; Yonemura, Shigenobu; Inoue, Azusa; Kimura, Hiroshi; Shinkai, Yoichi

Cell cycle dynamics and developmental dynamics of the 3D genome: toward linking the two timescales

CURRENT OPINION IN GENETICS & DEVELOPMENT

IF3.6

2022-04-01

OAAI

Miura, Hisashi; Hiratani, Ichiro

SAF-A promotes origin licensing and replication fork progression to ensure robust DNA replication

JOURNAL OF CELL SCIENCE

IF3.6

2022-01-24

OAAI

Connolly, Caitlin; Takahashi, Saori; Miura, Hisashi; Hiratani, Ichiro; Gilbert, Nick; Donaldson, Anne D.; Hiraga, Shin-Ichiro

Regulation of mammalian 3D genome organization and histone H3K9 dimethylation by H3K9 methyltransferases

COMMUNICATIONS BIOLOGY

IF5.1

2021-05-13

OAAI

Fukuda, Kei; Shimura, Chikako; Miura, Hisashi; Tanigawa, Akie; Suzuki, Takehiro; Dohmae, Naoshi; Hiratani, Ichiro; Shinkai, Yoichi

Mapping replication timing domains genome wide in single mammalian cells with single-cell DNA replication sequencing

NATURE PROTOCOLS

IF16

2020-11-23

PREAI

Miura, Hisashi; Takahashi, Saori; Shibata, Takahiro; Nagao, Koji; Obuse, Chikashi; Okumura, Katsuzumi; Ogata, Masato; Hiratani, Ichiro; Takebayashi, Shin-ichiro

Microrheology for Hi-C Data Reveals the Spectrum of the Dynamic 3D Genome Organization

BIOPHYSICAL JOURNAL

IF3.1

2020-05-01

OAAI

Shinkai, Soya; Sugawara, Takeshi; Miura, Hisashi; Hiratani, Ichiro; Onami, Shuichi

Multifaceted Hi-C benchmarking: what makes a difference in chromosome-scale genome scaffolding?多方面的hi-c基准测试: 什么使染色体规模的基因组支架有所不同？

GIGASCIENCE

IF3.9

2020-01-10

OAAI

Kadota, Mitsutaka; Nishimura, Osamu; Miura, Hisashi; Tanaka, Kaori; Hiratani, Ichiro; Kuraku, Shigehiro

The Eleanor ncRNAs activate the topological domain of the ESR1 locus to balance against apoptosis

NATURE COMMUNICATIONS

IF15.7

2019-08-22

OAAI

Abdalla, Mohamed Osama Ali; Yamamoto, Tatsuro; Maehara, Kazumitsu; Nogami, Jumpei; Ohkawa, Yasuyuki; Miura, Hisashi; Poonperm, Rawin; Hiratani, Ichiro; Nakayama, Hideki; Nakao, Mitsuyoshi; Saitoh, Noriko

Single-cell DNA replication profiling identifies spatiotemporal developmental dynamics of chromosome organization

NATURE GENETICS

IF31.8

2019-08-12

PREAI

Miura, Hisashi; Takahashi, Saori; Poonperm, Rawin; Tanigawa, Akie; Takebayashi, Shin-ichiro; Hiratani, Ichiro

Genome-wide stability of the DNA replication program in single mammalian cells

NATURE GENETICS

IF31.8

2019-02-25

OAAI

Takahashi, Saori; Miura, Hisashi; Shibata, Takahiro; Nagao, Koji; Okumura, Katsuzumi; Ogata, Masato; Buses, Chikashi; Takebayashi, Shin-ichiro; Hiratani, Ichiro

Srf destabilizes cellular identity by suppressing cell-type-specific gene expression programs

NATURE COMMUNICATIONS

IF15.7

2018-04-11

OAAI

Ikeda, Takashi; Hikichi, Takafusa; Miura, Hisashi; Shibata, Hirofumi; Mitsunaga, Kanae; Yamada, Yosuke; Woltjen, Knut; Miyamoto, Kei; Hiratani, Ichiro; Yamada, Yasuhiro; Hotta, Akitsu; Yamamoto, Takuya; Okita, Keisuke; Masui, Shinji

Classifying leukemia types with chromatin conformation data

GENOME BIOLOGY

IF9.4

2014-04-30

OAAI

Rousseau, Mathieu; Ferraiuolo, Maria A.; Crutchley, Jennifer L.; Wang, Xue Qing David; Miura, Hisashi; Blanchette, Mathieu; Dostie, Josee

Hox in motion: tracking HoxA cluster conformation during differentiation

NUCLEIC ACIDS RESEARCH

IF13.1

2013-10-29

OAAI

Rousseau, Mathieu; Crutchley, Jennifer L.; Miura, Hisashi; Suderman, Matthew; Blanchette, Mathieu; Dostie, Josee

The combination of gene perturbation assay and ChIP-chip reveals functional direct target genes for IRF8 in THP-1 cells

MOLECULAR IMMUNOLOGY

IF3

2010-08-01

PREAI

Kubosaki, Atsutaka; Lindgren, Gabriella; Tagami, Michihira; Simon, Christophe; Tomaru, Yasuhiro; Miura, Hisashi; Suzuki, Takahiro; Arner, Erik; Forrest, Alistair R. R.; Irvine, Katharine M.; Schroder, Kate; Hasegawa, Yuki; Kanamori-Katayama, Mutsumi; Rehli, Michael; Hume, David A.; Kawai, Jun; Suzuki, Masanori; Suzuki, Harukazu; Hayashizaki, Yoshihide

Regulatory interdependence of myeloid transcription factors revealed by Matrix RNAi analysis

GENOME BIOLOGY

IF9.4

2009-11-02

OAAI

Tomaru, Yasuhiro; Simon, Christophe; Forrest, Alistair R. R.; Miura, Hisashi; Kubosaki, Atsutaka; Hayashizaki, Yoshihide; Suzuki, Masanori

The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line

NATURE GENETICS

IF31.8

2009-04-19

387

OAAI

Suzuki, Harukazu; Forrest, Alistair R. R.; van Nimwegen, Erik; Daub, Carsten O.; Balwierz, Piotr J.; Irvine, Katharine M.; Lassmann, Timo; Ravasi, Timothy; Hasegawa, Yuki; de Hoon, Michiel J. L.; Katayama, Shintaro; Schroder, Kate; Carninci, Piero; Tomaru, Yasuhiro; Kanamori-Katayama, Mutsumi; Kubosaki, Atsutaka; Akalin, Altuna; Ando, Yoshinari; Arner, Erik; Asada, Maki; Asahara, Hiroshi; Bailey, Timothy; Bajic, Vladimir B.; Bauer, Denis; Beckhouse, Anthony G.; Bertin, Nicolas; Bjorkegren, Johan; Brombacher, Frank; Bulger, Erika; Chalk, Alistair M.; Chiba, Joe; Cloonan, Nicole; Dawe, Adam; Dostie, Josee; Engstrom, Par G.; Essack, Magbubah; Faulkner, Geoffrey J.; Fink, J. Lynn; Fredman, David; Fujimori, Ko; Furuno, Masaaki; Gojobori, Takashi; Gough, Julian; Grimmond, Sean M.; Gustafsson, Mika; Hashimoto, Megumi; Hashimoto, Takehiro; Hatakeyama, Mariko; Heinzel, Susanne; Hide, Winston; Hofmann, Oliver; Hornquist, Michael; Huminiecki, Lukasz; Ikeo, Kazuho; Imamoto, Naoko; Inoue, Satoshi; Inoue, Yusuke; Ishihara, Ryoko; Iwayanagi, Takao; Jacobsen, Anders; Kaur, Mandeep; Kawaji, Hideya; Kerr, Markus C.; Kimura, Ryuichiro; Kimura, Syuhei; Kimura, Yasumasa; Kitano, Hiroaki; Koga, Hisashi; Kojima, Toshio; Kondo, Shinji; Konno, Takeshi; Krogh, Anders; Kruger, Adele; Kumar, Ajit; Lenhard, Boris; Lennartsson, Andreas; Lindow, Morten; Lizio, Marina; MacPherson, Cameron; Maeda, Norihiro; Maher, Christopher A.; Maqungo, Monique; Mar, Jessica; Matigian, Nicholas A.; Matsuda, Hideo; Mattick, John S.; Meier, Stuart; Miyamoto, Sei; Miyamoto-Sato, Etsuko; Nakabayashi, Kazuhiko; Nakachi, Yutaka; Nakano, Mika; Nygaard, Sanne; Okayama, Toshitsugu; Okazaki, Yasushi; Okuda-Yabukami, Haruka; Orlando, Valerio; Otomo, Jun; Pachkov, Mikhail; Petrovsky, Nikolai; Plessy, Charles; Quackenbush, John; Radovanovic, Aleksandar; Rehli, Michael; Saito, Rintaro; Sandelin, Albin; Schmeier, Sebastian; Schonbach, Christian; Schwartz, Ariel S.; Semple, Colin A.; Sera, Miho; Severin, Jessica; Shirahige, Katsuhiko; Simons, Cas; Laurent, George St.; Suzuki, Masanori; Suzuki, Takahiro; Sweet, Matthew J.; Taft, Ryan J.; Takeda, Shizu; Takenaka, Yoichi; Tan, Kai; Taylor, Martin S.; Teasdale, Rohan D.; Tegner, Jesper; Teichmann, Sarah; Valen, Eivind; Wahlestedt, Claes; Waki, Kazunori; Waterhouse, Andrew; AWells, Christine; Winther, Ole; Wu, Linda; Yamaguchi, Kazumi; Yanagawa, Hiroshi; Yasuda, Jun; Zavolan, Mihaela; Hume, David A.; Arakawa, Takahiro; Fukuda, Shiro; Imamura, Kengo; Kai, Chikatoshi; Kaiho, Ai; Kawashima, Tsugumi; Kawazu, Chika; Kitazume, Yayoi; Kojima, Miki; Miura, Hisashi; Murakami, Kayoko; Murata, Mitsuyoshi; Ninomiya, Noriko; Nishiyori, Hiromi; Noma, Shohei; Ogawa, Chihiro; Sano, Takuma; Simon, Christophe; Tagami, Michihira; Takahashi, Yukari; Kawai, Jun; Hayashizaki, Yoshihide

Genome-wide investigation of in vivo EGR-1 binding sites in monocytic differentiation

GENOME BIOLOGY

IF9.4

2009-04-19

OAAI

Kubosaki, Atsutaka; Tomaru, Yasuhiro; Tagami, Michihira; Arner, Erik; Miura, Hisashi; Suzuki, Takahiro; Suzuki, Masanori; Suzuki, Harukazu; Hayashizaki, Yoshihide

研究方向