J.A. Gerlt - Publications, H-index & Citations

J.A. Gerlt

University of Illinois System

62H指数

604论文数

1.5W被引数

收录论文 77

发表时间

Pyridoxal 5'-phosphate synthesis and salvage in Bacteria and Archaea: predicting pathway variant distributions and holes

MICROBIAL GENOMICS

IF4

2023-02-02

OAAI

Denise, Remi; Babor, Jill; Gerlt, John A.; de Crecy-Lagard, Valerie

A roadmap for the functional annotation of protein families: a community perspective

DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION

IF3.6

2022-08-12

OAAI

de Crecy-Lagard, Valerie; de Hegedus, Rocio Amorin; Arighi, Cecilia; Babor, Jill; Bateman, Alex; Blaby, Ian; Blaby-Haas, Crysten; Bridge, Alan J.; Burley, Stephen K.; Cleveland, Stacey; Colwell, Lucy J.; Conesa, Ana; Dallago, Christian; Danchin, Antoine; de Waard, Anita; Deutschbauer, Adam; Dias, Raquel; Ding, Yousong; Fang, Gang; Friedberg, Iddo; Gerlt, John; Goldford, Joshua; Gorelik, Mark; Gyori, Benjamin M.; Henry, Christopher; Hutinet, Geoffrey; Jaroch, Marshall; Karp, Peter D.; Kondratova, Liudmyla; Lu, Zhiyong; Marchler-Bauer, Aron; Martin, Maria-Jesus; McWhite, Claire; Moghe, Gaurav D.; Monaghan, Paul; Morgat, Anne; Mungall, Christopher J.; Natale, Darren A.; Nelson, William C.; O'Donoghue, Sean; Orengo, Christine; O'Toole, Katherine H.; Radivojac, Predrag; Reed, Colbie; Roberts, Richard J.; Rodionov, Dmitri; Rodionova, Irina A.; Rudolf, Jeffrey D.; Saleh, Lana; Sheynkman, Gloria; Thibaud-Nissen, Francoise; Thomas, Paul D.; Uetz, Peter; Vallenet, David; Carter, Erica Watson; Weigele, Peter R.; Wood, Valerie; Wood-Charlson, Elisha M.; Xu, Jin

Radical SAM Enzymes and the Unexplored Chemistry of RiPP Biosynthesis

FASEB JOURNAL

IF4.2

2022-05-13

PREAI

Mitchell, Douglas; Precord, Timothy; Hudson, Graham; Mahanta, Nilkamal; Burkhart, Brandon; Gerlt, John

RadicalSAM.org: A Resource to Interpret Sequence-Function Space and Discover New Radical SAM Enzyme Chemistry RadicalSAM.org: 解释序列功能空间并发现新的自由基SAM酶化学的资源

ACS BIO & MED CHEM AU

IF4.3

2021-12-17

OAAI

Oberg, Nils; Precord, Timothy W.; Mitchell, Douglas A.; Gerlt, John A.

Discovery of new enzymatic functions and metabolic pathways using genomic enzymology web tools

CURRENT OPINION IN BIOTECHNOLOGY

IF7

2021-06-01

OAAI

Zallot, Remi; Oberg, Nils; Gerlt, John A.

Discovery of novel pathways for carbohydrate metabolism

CURRENT OPINION IN CHEMICAL BIOLOGY

IF6.1

2021-04-01

OAAI

Stack, Tyler M. M.; Gerlt, John A.

Characterization of an L-Ascorbate Catabolic Pathway with Unprecedented Enzymatic Transformations

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

IF15.6

2020-01-09

OAAI

Stack, Tyler M. M.; Morrison, Katelyn N.; Dettmer, Thomas M.; Wille, Brendan; Kim, Chan; Joyce, Ryan; Jermain, Madison; Naing, Yadanar Than; Bhatti, Khadija; San Francisco, Brian; Carter, Michael S.; Gerlt, John A.

The gastrointestinal pathogen Campylobacter jejuni metabolizes sugars with potential help from commensal Bacteroides vulgatus

COMMUNICATIONS BIOLOGY

IF5.1

2020-01-07

OAAI

Garber, Jolene M.; Nothaft, Harald; Pluvinage, Ben; Stahl, Martin; Bian, Xiaoming; Porfirio, Sara; Enriquez, Amber; Butcher, James; Huang, Hua; Glushka, John; Line, Eric; Gerlt, John A.; Azadi, Parastoo; Stintzi, Alain; Boraston, Alisdair B.; Szymanski, Christine M.

Discovery of novel bacterial queuine salvage enzymes and pathways in human pathogens

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

IF9.1

2019-09-03

OAAI

Yuan, Yifeng; Zallot, Remi; Grove, Tyler L.; Payan, Daniel J.; Martin-Verstraete, Isabelle; Sepic, Sara; Balamkundu, Seetharamsingh; Neelakandan, Ramesh; Gadi, Vinod K.; Liu, Chuan-Fa; Swairjo, Manal A.; Dedon, Peter C.; Almo, Steven C.; Gerlt, John A.; de Crecy-Lagard, Valerie

'Democratized' genomic enzymology web tools for functional assignment

CURRENT OPINION IN CHEMICAL BIOLOGY

IF6.1

2018-12-01

123

OAAI

Zallot, Remi; Oberg, Nils O.; Gerlt, John A.

Enzyme Architecture: Breaking Down the Catalytic Cage that Activates Orotidine 5′-Monophosphate Decarboxylase for Catalysis

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

IF15.6

2018-11-26

OAAI

Reyes, Archie C.; Plache, David C.; Koudelka, Astrid P.; Amyes, Tina L.; Gerlt, John A.; Richard, John P.

Functional assignment of multiple catabolic pathways for D-apiose

NATURE CHEMICAL BIOLOGY

IF13.7

2018-06-04

OAAI

Carter, Michael S.; Zhang, Xinshuai; Huang, Hua; Bouvier, Jason T.; San Francisco, Brian; Vetting, Matthew W.; Al-Obaidi, Nawar; Bonanno, Jeffrey B.; Ghosh, Agnidipta; Zallot, Remi G.; Andersen, Harvey M.; Almo, Steven C.; Gerlt, John A.

Prediction of enzymatic pathways by integrative pathway mapping

ELIFE

IF0

2018-01-29

OAAI

Calhoun, Sara; Korczynska, Magdalena; Wichelecki, Daniel J.; Francisco, Brian San; Zhao, Suwen; Rodionov, Dmitry A.; Vetting, Mattew W.; Al-Obaidi, Nawar F.; Lin, Henry; O'Meara, Mattew J.; Scott, David A.; Morris, John H.; Russel, Daniel; Almo, Steven C.; Osterman, Andrei L.; Gerlt, John A.; Jacobson, Mattew P.; Shoichet, Brian K.; Sali, Andrej

Assignment of function to a domain of unknown function: DUF1537 is a new kinase family in catabolic pathways for acid sugars

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

IF9.1

2016-07-11

OAAI

Zhang, Xinshuai; Carter, Michael S.; Vetting, Matthew W.; Francisco, Brian San; Zhao, Suwen; Al-Obaidi, Nawar F.; Solbiati, Jose O.; Thiaville, Jennifer J.; de Crecy-Lagard, Valerie; Jacobson, Matthew P.; Almo, Steven C.; Gerlt, John A.

Members of a Novel Kinase Family (DUF1537) Can Recycle Toxic Intermediates into an Essential Metabolite

ACS CHEMICAL BIOLOGY

IF3.8

2016-06-24

PREAI

Thiaville, Jennifer J.; Flood, Jake; Yurgel, Svetlana; Prunetti, Laurence; Elbadawi-Sidhu, Mona; Hutinet, Geoffrey; Forouhar, Farhad; Zhang, Xinshuai; Ganesan, Venkateswaran; Reddy, Patrick; Fiehn, Oliver; Gerlt, J. A.; Hunt, John F.; Copley, Shelley D.; de Crecy-Lagard, Valerie

A General Strategy for the Discovery of Metabolic Pathways: D-Threitol, L-Threitol, and Erythritol Utilization in Mycobacterium smegmatis

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

IF15.6

2015-11-12

PREAI

Huang, Hua; Carter, Michael S.; Vetting, Matthew W.; Al-Obaid, Nawar; Patskovsky, Yury; Almo, Steven C.; Gerlt, John A.

ATP-binding Cassette (ABC) Transport System Solute-binding Protein-guided Identification of Novel D-Altritol and Galactitol Catabolic Pathways in Agrobacterium tumefaciens C58

JOURNAL OF BIOLOGICAL CHEMISTRY

IF3.9

2015-11-01

OAAI

Wichelecki, Daniel J.; Vetting, Matthew W.; Chou, Liyushang; Al-Obaidi, Nawar; Bouvier, Jason T.; Almo, Steven C.; Gerlt, John A.

A Unique cis-3-Hydroxy-L-proline Dehydratase in the Enolase Superfamily

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

IF15.6

2015-01-26

PREAI

Zhang, Xinshuai; Kumar, Ritesh; Vetting, Matthew W.; Zhao, Suwen; Jacobson, Matthew P.; Almo, Steven C.; Gerlt, John A.

Investigating the role of a backbone to substrate hydrogen bond in OMP decarboxylase using a site-specific amide to ester substitution

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

IF9.1

2014-10-01

OAAI

Desai, Bijoy J.; Goto, Yuki; Cembran, Alessandro; Fedorov, Alexander A.; Almo, Steven C.; Gao, Jiali; Suga, Hiroaki; Gerlt, John A.

Integration of untargeted metabolomics with transcriptomics reveals active metabolic pathways 非靶向代谢组学与转录组学的整合揭示了活跃的代谢途径

METABOLOMICS

IF3.3

2014-08-03

OAAI

Cho, Kyuil; Evans, Bradley S.; Wood, B. McKay; Kumar, Ritesh; Erb, Tobias J.; Warlick, Benjamin P.; Gerlt, John A.; Sweedler, Jonathan V.

研究方向