Kenta Nakai - Publications, H-index & Citations

Kenta Nakai

The University of Tokyo

60H指数

473论文数

2.3W被引数

收录论文 98

发表时间

Transcriptomic Profiling of Mesenchymal Stromal Cells Derived From Medication-Related Osteonecrosis of the Jaw 源自药物相关颌骨坏死间充质基质细胞的转录组分析

Oral Diseases

IF2.9

2026-09-17

PREAI

Kazuhiro Nishimaki; Sung-Joon Park; Nobuyuki Kaibuchi; Satoru Onizuka; Toshihiro Okamoto; Kenta Nakai; Masayuki Yamato

Spatial transcriptomics of Ciona adult brains reveals functional zonalization and insights into neural gland function 文昌鱼成年大脑的空间转录组学揭示功能分区及其对神经腺功能的见解

iScience

IF4.1

2026-08-24

OAAI

Xin Zeng; Fuki Gyoja; Ayana Maruo; Nanako Okawa; Ken-ichi Mizutani; Yutaka Suzuki; Kenta Nakai; Takehiro G. Kusakabe

Bioinformatics analysis of regulatory relationships between long non-coding RNA genes and transcription factor coding genes 长链非编码RNA基因与转录因子编码基因之间调控关系的生物信息学分析

Scientific Reports

IF3.9

2026-08-04

OAAI

Taiju Yamada; Martin Loza; Izuho Hatada; Kenta Nakai

PhenoNMF: A novel multi-layer matrix factorization framework for age-stratified comprehensive phenotypic similarity analysis PhenoNMF：一种用于年龄分层综合表型相似性分析的新型多层矩阵分解框架

BMC Medical Informatics and Decision Making

IF3.8

2026-04-28

OAAI

Yutong Dai; Wanzhe Xu; Yitao Yang; Weihang Zhang; Martin Loza; Kenta Nakai

Establishing the Asia & Pacific Bioinformatics Joint Congress: a historic milestone in regional bioinformatics collaboration 建立亚洲与太平洋生物信息学联合大会：区域生物信息学合作的历史性里程碑

BRIEFINGS IN BIOINFORMATICS

IF7.7

2025-11-01

OAAI

Khan, Asif M.; Goto, Susumu; Nakai, Kenta; Wong, Limsoon; Kovats, Diane E.; Saito, Yuki; Ikematsu, Shinya; Yamanishi, Yoshihiro; Wahid, Nurul Salwanie Che; Singh, Harpreet; Eranti, Pradeep; Chen, Yi-Ping Phoebe; Kim, Tae-Min; Ho, Shinn-Ying; Mar, Jessica C.; Iwasaki, Wataru; Valadi, Jayaraman; Suravajhala, Prashanth; Schonbach, Christian; Tan, Tin Wee; Ranganathan, Shoba; Aoki-Kinoshita, Kiyoko F.

Machine Learning-Based Predictive Modeling Maximizes the Efficacy of mTOR/p53 Co-Targeting Therapy Against AML 基于机器学习的预测模型最大化mTOR/p53协同靶向疗法对AML的疗效

Cancer Science

IF4.3

2025-08-11

OAAI

Jingmei Li; Emi Sugimoto; Keita Yamamoto; Yutong Dai; Wenyu Zhang; Yu-Hsuan Chang; Jakushin Nakahara; Tomohiro Yabushita; Toshio Kitamura; Sung-Joon Park; Kenta Nakai; Susumu Goyama

Gene2role: a role-based gene embedding method for comparative analysis of signed gene regulatory networks Gene2role：一种用于有向基因调控网络比较分析的角色化基因嵌入方法

BMC BIOINFORMATICS

IF3.3

2025-05-24

OAAI

Zeng, Xin; Liu, Shu; Liu, Bowen; Zhang, Weihang; Xu, Wanzhe; Toriumi, Fujio; Nakai, Kenta

Computational analysis of the functional impact of MHC-II-expressing triple-negative breast cancer

FRONTIERS IN IMMUNOLOGY

IF5.9

2024-11-27

OAAI

Cui, Yang; Zhang, Weihang; Zeng, Xin; Yang, Yitao; Park, Sung-Joon; Nakai, Kenta

Comparative single-cell transcriptomic analysis reveals putative differentiation drivers and potential origin of vertebrate retina

genomics proteomics bioinformatics

IF2.8

2024-11-12

OAAI

Zeng, Xin; Gyoja, Fuki; Cui, Yang; Loza, Martin; Kusakabe, Takehiro G.; Nakai, Kenta

Single-cell transcriptomic analysis of B cells reveals new insights into atypical memory B cells in COVID-19

JOURNAL OF MEDICAL VIROLOGY

IF4.6

2024-08-12

OAAI

Garcia-Vega, Melissa; Llamas-Covarrubias, Mara Anais; Loza, Martin; Resendiz-Sandoval, Monica; Hinojosa-Trujillo, Diana; Melgoza-Gonzalez, Edgar; Valenzuela, Olivia; Mata-Haro, Veronica; Hernandez-Onate, Miguel; Soto-Gaxiola, Alan; Chavez-Rueda, Karina; Nakai, Kenta; Hernandez, Jesus

Characterization of trans-spliced chimeric RNAs: insights into the mechanism of trans-splicing

genomics proteomics bioinformatics

IF2.8

2024-06-06

OAAI

Yokomori, Rui; Kusakabe, Takehiro G.; Nakai, Kenta

A computational approach for deciphering the interactions between proximal and distal gene regulators in GC B-cell response

genomics proteomics bioinformatics

IF2.8

2024-05-06

OAAI

Park, Sung-Joon; Nakai, Kenta

HyGAnno: hybrid graph neural network-based cell type annotation for single-cell ATAC sequencing data

BRIEFINGS IN BIOINFORMATICS

IF7.7

2024-04-05

OAAI

Zhang, Weihang; Cui, Yang; Liu, Bowen; Loza, Martin; Park, Sung-Joon; Nakai, Kenta

Genome-wide ATAC-see screening identifies TFDP1 as a modulator of global chromatin accessibility

NATURE GENETICS

IF31.8

2024-02-15

PREAI

Ishii, Satoko; Kakizuka, Taishi; Park, Sung-Joon; Tagawa, Ayako; Sanbo, Chiaki; Tanabe, Hideyuki; Ohkawa, Yasuyuki; Nakanishi, Mahito; Nakai, Kenta; Miyanari, Yusuke

Multi-omics computational analysis unveils the involvement of AP-1 and CTCF in hysteresis of chromatin states during macrophage polarization 多组学计算分析揭示了AP-1和CTCF参与巨噬细胞极化过程中染色质状态的滞后

FRONTIERS IN IMMUNOLOGY

IF5.9

2023-12-20

OAAI

Zhang, Yubo; Yang, Wenbo; Kumagai, Yutaro; Loza, Martin; Zhang, Weihang; Park, Sung-Joon; Nakai, Kenta

Epigenetic characterization of housekeeping core promoters and their importance in tumor suppression

NUCLEIC ACIDS RESEARCH

IF13.1

2023-12-12

OAAI

Loza, Martin; Vandenbon, Alexis; Nakai, Kenta

CoraL: interpretable contrastive meta-learning for the prediction of cancer-associated ncRNA-encoded small peptides

BRIEFINGS IN BIOINFORMATICS

IF7.7

2023-10-19

PREAI

Li, Zhongshen; Jin, Junru; He, Wenjia; Long, Wentao; Yu, Haoqing; Gao, Xin; Nakai, Kenta; Zou, Quan; Wei, Leyi

LONRF2 is a protein quality control ubiquitin ligase whose deficiency causes late-onset neurological deficits LONRF2是一种蛋白质质量控制泛素连接酶，其缺乏会导致迟发性神经功能缺损

NATURE AGING

IF19.4

2023-07-20

PREAI

Li, Dan; Johmura, Yoshikazu; Morimoto, Satoru; Doi, Miyuki; Nakanishi, Keiko; Ozawa, Manabu; Tsunekawa, Yuji; Inoue-Yamauchi, Akane; Naruse, Hiroya; Matsukawa, Takashi; Takeshita, Yukio; Suzuki, Naoki; Aoki, Masashi; Nishiyama, Ayumi; Zeng, Xin; Konishi, Chieko; Suzuki, Narumi; Nishiyama, Atsuya; Harris, Alexander Stephen; Morita, Mariko; Yamaguchi, Kiyoshi; Furukawa, Yoichi; Nakai, Kenta; Tsuji, Shoji; Yamazaki, Satoshi; Yamanashi, Yuji; Shimada, Shoichi; Okada, Takashi; Okano, Hideyuki; Toda, Tatsushi; Nakanishi, Makoto

DeepBIO: an automated and interpretable deep-learning platform for high-throughput biological sequence prediction, functional annotation and visualization analysis DeepBIO: 一个自动化和可解释的深度学习平台，用于高通量生物序列预测，功能注释和可视化分析

NUCLEIC ACIDS RESEARCH

IF13.1

2023-02-17

OAAI

Wang, Ruheng; Jiang, Yi; Jin, Junru; Yin, Chenglin; Yu, Haoqing; Wang, Fengsheng; Feng, Jiuxin; Su, Ran; Nakai, Kenta; Zou, Quan; Wei, Leyi

Comprehensive comparison of gene expression diversity among a variety of human stem cells

genomics proteomics bioinformatics

IF2.8

2022-11-29

OAAI

Yamatani, Yukiyo; Nakai, Kenta

研究方向