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F

F. A. Matsen

Fred Hutchinson Cancer Center

55H指数
468论文数
1.3W被引数
收录论文 96
发表时间
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Unifying Phylogenetic Traversal and Deep Learning to Guide Tree Exploration将系统发育遍历与深度学习相结合以指导树探索
errSystematic Biology
IF5.7
err2026-08-18
err0
errOAAI
errLena Collienne; David Harry Richman; David H Rich; Mary Barker; Chris Jennings-Shaffer; Frederick A Matsen, IV; null
err分享
err收藏
Nucleotide context models outperform protein language models for predicting antibody affinity maturation核苷酸上下文模型在预测抗体亲和力成熟方面优于蛋白质语言模型
errPLOS COMPUTATIONAL BIOLOGY
IF3.6
err2025-12-01
err0
PREAI
errJohnson, Mackenzie M.; Sung, Kevin; Haddox, Hugh K.; Vora, Ashni A.; Araki, Tatsuya; Victora, Gabriel D.; Song, Yun S.; Fukuyama, Julia; Matsen Iv, Frederick A.
err分享
err收藏
Objective Ignorance: A Flaw in Our Ability to Predict Patient Outcomes客观无知：我们预测患者结局能力中的一个缺陷
errJBJS
IF0
err2025-11-19
err0
PREAI
errMatsen, Frederick A. III MD, a
err分享
err收藏
Avoiding overstuffing: the kinematic total shoulder arthroplasty
errINTERNATIONAL ORTHOPAEDICS
IF2.6
err2025-11-01
err0
PREAI
errMatsen III, Frederick
err分享
err收藏
The Structure of Deviations From Maximum Parsimony for Densely-Sampled Data and Applications for Clade Support Estimation
errIEEE Transactions on Computational Biology and Bioinformatics
IF0
err2025-11-01
err0
PREAI
errHoward-Snyder, William; Dumm, Will; Barker, Mary; Milanov, Ognian; Winston, Claris; Rich, David H.; Suchard, Marc A.; Matsen, Frederick A.
err分享
err收藏
torchtree: Flexible Phylogenetic Model Development and Inference Using PyTorchtorchtree: 使用PyTorch进行灵活的进化树模型开发与推断
errSYSTEMATIC BIOLOGY
IF5.7
err2025-09-01
err1
errOAAI
errFourment, Mathieu; Macaulay, Matthew; Swanepoel, Christiaan J.; Ji, Xiang; Suchard, Marc A.; Matsen IV, Frederick A.
err分享
err收藏
Learning antibody sequence constraints from allelic inclusion从等位基因包含中学习抗体序列约束
errCell Systems
IF7.7
err2025-08-13
err0
PREAI
errMilind Jagota; Chloe Hsu; Thomas Mazumder; Kevin Sung; William S. DeWitt; Jennifer Listgarten; Frederick A. Matsen IV; Chun Jimmie Ye; Yun S. Song
err分享
err收藏
A Sitewise Model of Natural Selection on Individual Antibodies via a Transformer-Encoder通过Transformer-Encoder实现的针对单个抗体的位点模型自然选择
errMOLECULAR BIOLOGY AND EVOLUTION
IF5.3
err2025-08-01
err0
errOAAI
errMatsen IV, Frederick A.; Sung, Kevin; Johnson, Mackenzie M.; Dumm, Will; Rich, David; Starr, Tyler N.; Song, Yun S.; Bradley, Philip; Fukuyama, Julia; Haddox, Hugh K.
err分享
err收藏
Statistical analysis of repertoire data demonstrates the influence of microhomology in V(D)J recombinationrepertoire数据统计分析表明microhomology在V(D)J重组中具有影响
errNUCLEIC ACIDS RESEARCH
IF13.1
err2025-04-02
err0
PREAI
errRussell, Magdalena L.; Trofimov, Assya; Bradley, Philip; Matsen, Frederick A.
err分享
err收藏
Transient silencing of hypermutation preserves B cell affinity during clonal bursting超突变瞬时沉默在克隆爆发期间保持B细胞亲和力
errNATURE
IF48.5
err2025-03-19
err1
errOAAI
errPae, Juhee; Schwan, Niklas; Ottino-Loffler, Bertrand; Dewitt, William S.; Garg, Amar; Bortolatto, Juliana; Vora, Ashni A.; Shen, Jin-Jie; Hobbs, Alvaro; Castro, Tiago B. R.; Mesin, Luka; Matsen, Frederick A.; Meyer-Hermann, Michael; Victora, Gabriel D.
err分享
err收藏
Leveraging DAGs to improve context-sensitive and abundance-aware tree estimation利用有向无环图（DAGs）改进上下文敏感且丰度感知的树估计
errPHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
IF4.7
err2025-02-20
err2
errOAAI
errDumm, Will; Ralph, Duncan; Dewitt, William; Vora, Ashni; Araki, Tatsuya; Victora, Gabriel D.; Matsen Iv, Frederick A.
err分享
err收藏
Phylogenetic Tree Instability After Taxon Addition: Empirical Frequency, Predictability, and Consequences For Online Inference添加分类单元后的系统发育树不稳定性: 经验频率，可预测性和在线推理的后果
errSYSTEMATIC BIOLOGY
IF5.7
err2024-10-25
err0
errOAAI
errCollienne, Lena; Barker, Mary; Suchard, Marc A.; Matsen, Frederick A.
err分享
err收藏
Deep mutational scanning of CYP2C19 in human cells reveals a substrate specificity-abundance tradeoff
errGENETICS
IF5.1
err2024-09-25
err0
PREAI
errBoyle, Gabriel E.; Sitko, Katherine A.; Galloway, Jared G.; Haddox, Hugh K.; Bianchi, Aisha Haley; Dixon, Ajeya; Wheelock, Melinda K.; Vandi, Allyssa J.; Wang, Ziyu R.; Thomson, Raine E. S.; Garge, Riddhiman K.; Rettie, Allan E.; Rubin, Alan F.; Geck, Renee C.; Gillam, Elizabeth M. J.; Dewitt, William S.; Matsen, Frederick A.; Fowler, Douglas M.
err分享
err收藏
Deep mutational scanning reveals functional constraints and antibody-escape potential of Lassa virus glycoprotein complex
errIMMUNITY
IF26.3
err2024-09-01
err0
errOAAI
errCarr, Caleb R.; Crawford, Katharine H. D.; Murphy, Michael; Galloway, Jared G.; Haddox, Hugh K.; Matsen IV, Frederick A.; Andersen, Kristian G.; King, Neil P.; Bloom, Jesse D.
err分享
err收藏
Random-Effects Substitution Models for Phylogenetics via Scalable Gradient Approximations通过可扩展的梯度近似进行系统发育的随机效应替代模型
errSYSTEMATIC BIOLOGY
IF5.7
err2024-05-07
err1
errOAAI
errMagee, Andrew F.; Holbrook, Andrew J.; Pekar, Jonathan E.; Caviedes-Solis, Itzue W.; Matsen, Fredrick A.; Baele, Guy; Wertheim, Joel O.; Ji, Xiang; Lemey, Philippe; Suchard, Marc A.
err分享
err收藏
Using viral sequence diversity to estimate time of HIV infection in infants利用病毒序列多样性估计婴儿感染HIV的时间
errPLOS PATHOGENS
IF4.9
err2023-12-20
err0
errOAAI
errRussell, Magdalena L.; Fish, Carolyn S.; Drescher, Sara; Cassidy, Noah A. J.; Chanana, Pritha; Benki-Nugent, Sarah; Slyker, Jennifer; Mbori-Ngacha, Dorothy; Bosire, Rose; Richardson, Barbra; Wamalwa, Dalton; Maleche-Obimbo, Elizabeth; Overbaugh, Julie; John-Stewart, Grace; Matsen, Frederick A.; Lehman, Dara A.
err分享
err收藏
Single B cell transcriptomics identifies multiple isotypes of broadly neutralizing antibodies against flaviviruses
errPLOS PATHOGENS
IF4.9
err2023-10-09
err3
errOAAI
errLubow, Jay; Levoir, Lisa M.; Ralph, Duncan K.; Belmont, Laura; Contreras, Maya; Cartwright-Acar, Catiana H.; Kikawa, Caroline; Kannan, Shruthi; Davidson, Edgar; Duran, Veronica; Rebellon-Sanchez, David E.; Sanz, Ana M.; Rosso, Fernando; Doranz, Benjamin J.; Einav, Shirit; Matsen, Frederick A.; Goo, Leslie
err分享
err收藏
Elevated binding and functional antibody responses to SARS-CoV-2 in infants versus mothers
errNATURE COMMUNICATIONS
IF15.7
err2023-08-11
err1
errOAAI
errStoddard, Caitlin I.; Sung, Kevin; Yaffe, Zak A.; Weight, Haidyn; Beaudoin-Bussieres, Guillaume; Galloway, Jared; Gantt, Soren; Adhiambo, Judith; Begnel, Emily R.; Ojee, Ednah; Slyker, Jennifer; Wamalwa, Dalton; Kinuthia, John; Finzi, Andres; Matsen IV, Frederick A.; Lehman, Dara A.; Overbaugh, Julie
err分享
err收藏
Passively Acquired Constant Region 5-Specific Antibodies Associated With Improved Survival in Infants Who Acquire Human Immunodeficiency Virus被动获得的恒定区5特异性抗体与获得人类免疫缺陷病毒的婴儿存活率提高有关
errOPEN FORUM INFECTIOUS DISEASES
IF3.8
err2023-06-14
err3
errOAAI
errYaffe, Zak A.; Sung, Kevin; Bosire, Rose; Farquhar, Carey; Ngacha, Dorothy Mbori; Lohman-Payne, Barbara; Nduati, Ruth; John-Stewart, Grace; Matsen, Frederick A.; Overbaugh, Julie
err分享
err收藏
Automatic Differentiation is no Panacea for Phylogenetic Gradient Computation
errGENOME BIOLOGY AND EVOLUTION
IF2.8
err2023-06-02
err2
errOAAI
errFourment, Mathieu; Swanepoel, Christiaan J.; Galloway, Jared G.; Ji, Xiang; Gangavarapu, Karthik; Suchard, Marc A.; Matsen, Frederick A.
err分享
err收藏

研究方向

暂时未获取到该数据
合作学者
合作期刊
M
Martin A. Nowak
H 指数: 160 · 论文数: 701
A
Andrew Rambaut
H 指数: 150 · 论文数: 524
D
Daniel C. Douek
H 指数: 137 · 论文数: 597
B
Bjoern Peters
H 指数: 106 · 论文数: 653
M
Marc A. Suchard
H 指数: 104 · 论文数: 689
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