Srinivas Aluru - Publications, H-index & Citations

Srinivas Aluru

Iowa State University

40H指数

520论文数

1.9W被引数

收录论文 45

发表时间

SCEMENT: scalable and memory efficient integration of large-scale single-cell RNA-sequencing data SCEMENT: 大规模单细胞RNA测序数据可扩展且内存高效的集成

BIOINFORMATICS

IF5.4

2025-02-22

OAAI

Chockalingam, Sriram P.; Aluru, Maneesha; Aluru, Srinivas

Sparse Symmetric Format for Tucker Decomposition Tucker分解的稀疏对称格式

IEEE TRANSACTIONS ON PARALLEL AND DISTRIBUTED SYSTEMS

IF6

2023-06-01

OAAI

Shivakumar, Shruti; Li, Jiajia; Kannan, Ramakrishnan; Aluru, Srinivas

A Parallel Framework for Constraint-Based Bayesian Network Learning via Markov Blanket Discovery

IEEE TRANSACTIONS ON PARALLEL AND DISTRIBUTED SYSTEMS

IF6

2023-06-01

PREAI

Srivastava, Ankit; Chockalingam, Sriram P.; Aluru, Srinivas

Fast alignment and preprocessing of chromatin profiles with Chromap

NATURE COMMUNICATIONS

IF15.7

2021-11-12

OAAI

Zhang, Haowen; Song, Li; Wang, Xiaotao; Cheng, Haoyu; Wang, Chenfei; Meyer, Clifford A.; Liu, Tao; Tang, Ming; Aluru, Srinivas; Yue, Feng; Liu, X. Shirley; Li, Heng

Editorial From the New Editor-in-Chief

IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS

IF3.4

2021-11-01

OAAI

Aluru, Srinivas

Reply to: Re-evaluating the evidence for a universal genetic boundary among microbial species

NATURE COMMUNICATIONS

IF15.7

2021-07-07

OAAI

Rodriguez-R, Luis M.; Jain, Chirag; Conrad, Roth E.; Aluru, Srinivas; Konstantinidis, Konstantinos T.

A comprehensive evaluation of long read error correction methods 长读纠错方法的综合评价

BMC GENOMICS

IF3.7

2020-12-21

OAAI

Zhang, Haowen; Jain, Chirag; Aluru, Srinivas

Sequential and parallel algorithms for all-pair k-mismatch maximal common substrings

JOURNAL OF PARALLEL AND DISTRIBUTED COMPUTING

IF4

2020-10-01

OAAI

Chockalingam, Sriram P.; Thankachan, Sharma, V; Aluru, Srinivas

Interval stabbing on the Automata Processor

JOURNAL OF PARALLEL AND DISTRIBUTED COMPUTING

IF4

2020-01-01

PREAI

Roy, Indranil; Srivastava, Ankit; Grimm, Matt; Aluru, Srinivas

Fast de Bruijn Graph Compaction in Distributed Memory Environments

IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS

IF3.4

2020-01-01

OAAI

Pan, Tony; Nihalani, Rahul; Aluru, Srinivas

Evaluating High Performance Pattern Matching on the Automata Processor 在自动机处理器上评估高性能模式匹配

IEEE TRANSACTIONS ON COMPUTERS

IF3.8

2019-08-01

PREAI

Roy, Indranil; Srivastava, Ankit; Grimm, Matt; Nourian, Marziyeh; Becchi, Michela; Aluru, Srinivas

Kmerind: A Flexible Parallel Library for K-mer Indexing of Biological Sequences on Distributed Memory Systems Kmerind: 分布式存储系统上生物序列k-mer索引的灵活并行库

IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS

IF3.4

2019-07-01

PREAI

Pan, Tony; Flick, Patrick; Jain, Chirag; Liu, Yongchao; Aluru, Srinivas

High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries 90k原核生物基因组的高通量ANI分析揭示了清晰的物种边界

NATURE COMMUNICATIONS

IF15.7

2018-11-30

2.9K

OAAI

Jain, Chirag; Rodriguez-R, Luis M.; Phillippy, Adam M.; Konstantinidis, Konstantinos T.; Aluru, Srinivas

An Adaptive Parallel Algorithm for Computing Connected Components

IEEE TRANSACTIONS ON PARALLEL AND DISTRIBUTED SYSTEMS

IF6

2017-09-01

OAAI

Jain, Chirag; Flick, Patrick; Pan, Tony; Green, Oded; Aluru, Srinivas

Efficient detection of viral transmissions with Next-Generation Sequencing data

BMC GENOMICS

IF3.7

2017-05-24

OAAI

Rytsareva, Inna; Campo, David S.; Zheng, Yueli; Sims, Seth; Thankachan, Sharma V.; Tetik, Cansu; Chirag, Jain; Chockalingam, Sriram P.; Sue, Amanda; Aluru, Srinivas; Khudyakov, Yury

RD26 mediates crosstalk between drought and brassinosteroid signalling pathways

NATURE COMMUNICATIONS

IF15.7

2017-02-24

213

OAAI

Ye, Huaxun; Liu, Sanzhen; Tang, Buyun; Chen, Jiani; Xie, Zhouli; Nolan, Trevor M.; Jiang, Hao; Guo, Hongqing; Lin, Hung-Ying; Li, Lei; Wang, Yanqun; Tong, Hongning; Zhang, Mingcai; Chu, Chengcai; Li, Zhaohu; Aluru, Maneesha; Aluru, Srinivas; Schnable, Patrick S.; Yin, Yanhai

Discovering Motifs in Biological Sequences Using the Micron Automata Processor

IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS

IF3.4

2016-01-01

PREAI

Roy, Indranil; Aluru, Srinivas

Parallel Mutual Information Based Construction of Genome-Scale Networks on the Intel® Xeon Phi™ Coprocessor

IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS

IF3.4

2015-09-01

OAAI

Misra, Sanchit; Pamnany, Kiran; Aluru, Srinivas