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Adjuvant personalized multivalent neoantigen DNA vaccination for MGMT unmethylated glioblastoma: a phase 1 trial 佐剂个性化多价新抗原DNA疫苗接种用于MGMT未甲基化胶质母细胞瘤：一项1期临床试验 Garfinkle, Elizabeth A. R.; Perales-Linares, Renzo; Gimple, Ryan C.; Livingstone, Alexandra J.; Roberts, Kaleigh F.; Butt, Omar H.; Goedegebuure, S. Peter; McLellan, Michael D.; Chang, Gue Su; Hundal, Jasreet; Yan, Jian; Navarro, Jaye B.; Paxton, Sophia A.; Chattopadhyay, Srestha; Cooch, Neil; Perales-Puchalt, Alfredo; Stavroulaki, Konstantina; Rochestie, Sarah; Peters, Joann; Junker, Beth; Campian, Jian L.; Chheda, Milan G.; Chicoine, Michael R.; Kim, Albert H.; Willie, Jon T.; Zipfel, Gregory J.; Dowling, Joshua L.; Miller, Christopher A.; Griffith, Obi L.; Griffith, Malachi; Gillanders, William E.; Miller, Katherine E.; Mardis, Elaine R.; Sardesai, Niranjan Y.; Dunn, Gavin P.; Johanns, Tanner M. 分享 收藏
Stem cell architecture drives myelodysplastic syndrome progression and predicts response to venetoclax-based therapy (vol 28, pg 557, 2022) Ganan-Gomez, Irene; Yang, Hui; Ma, Feiyang; Montalban-Bravo, Guillermo; Thongon, Natthakan; Marchica, Valentina; Richard-Carpentier, Guillaume; Chien, Kelly; Manyam, Ganiraju; Wang, Feng; Alfonso, Ana; Chen, Shuaitong; Class, Caleb; Kanagal-Shamanna, Rashmi; Ingram, Justin P.; Ogoti, Yamini; Rose, Ashley; Loghavi, Sanam; Lockyer, Pamela; Cambo, Benedetta; Muftuoglu, Muharrem; Schneider, Sarah; Adema, Vera; McLellan, Michael; Garza, John; Marchesini, Matteo; Giuliani, Nicola; Pellegrini, Matteo; Wang, Jing; Walker, Jason; Li, Ziyi; Takahashi, Koichi; Leverson, Joel D.; Bueso-Ramos, Carlos; Andreeff, Michael; Clise-Dwyer, Karen; Garcia-Manero, Guillermo; Colla, Simona 分享 收藏
Stem cell architecture drives myelodysplastic syndrome progression and predicts response to venetoclax-based therapy 干细胞结构推动骨髓增生异常综合征的进展并预测对基于维尼托克的治疗的反应 Ganan-Gomez, Irene; Yang, Hui; Ma, Feiyang; Montalban-Bravo, Guillermo; Thongon, Natthakan; Marchica, Valentina; Richard-Carpentier, Guillaume; Chien, Kelly; Manyam, Ganiraju; Wang, Feng; Alfonso, Ana; Chen, Shuaitong; Class, Caleb; Kanagal-Shamanna, Rashmi; Ingram, Justin P.; Ogoti, Yamini; Rose, Ashley; Loghavi, Sanam; Lockyer, Pamela; Cambo, Benedetta; Muftuoglu, Muharrem; Schneider, Sarah; Adema, Vera; McLellan, Michael; Garza, John; Marchesini, Matteo; Giuliani, Nicola; Pellegrini, Matteo; Wang, Jing; Walker, Jason; Li, Ziyi; Takahashi, Koichi; Leverson, Joel D.; Bueso-Ramos, Carlos; Andreeff, Michael; Clise-Dwyer, Karen; Garcia-Manero, Guillermo; Colla, Simona 分享 收藏
HPV transcript expression affects cervical cancer response to chemoradiation HPV转录本表达影响宫颈癌对放化疗的反应 Ruiz, Fiona J.; Inkman, Matthew; Rashmi, Ramachandran; Muhammad, Naoshad; Gabriel, Nishanth; Miller, Christopher A.; McLellan, Michael D.; Goldstein, Michael; Markovina, Stephanie; Grigsby, Perry W.; Zhang, Jin; Schwarz, Julie K. 分享 收藏
HPV-EM: an accurate HPV detection and genotyping EM algorithm Inkman, Matthew J.; Jayachandran, Kay; Ellis, Thomas M.; Ruiz, Fiona; McLellan, Michael D.; Miller, Christopher A.; Wu, Yufeng; Ojesina, Akinyemi I.; Schwarz, Julie K.; Zhang, Jin 分享 收藏
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Genomic alterations in clonal hematopoiesis Huang, Kuan-Lin; Xie, Mingchao; Wu, Yige; Jayasinghe, Reyka; Varghese, Rajees; Mashl, R. Jay; Cao, Song; Wyczalkowski, Matthew; Liang, Wen-wei; Wendel, Michael C.; Fields, Ryan; McLellan, Michael D.; Link, Daniel C.; Chen, Feng; Ding, Li 分享 收藏
Multi-Center Mutation Calling in Multiple Cancers: The MC3 Project Ellrott, Kyle; Bailey, Mathew; Saksena, Gordon; Covington, Kyle; Kandoth, Cyriac; Stewart, Chip; McLellan, Michael; Sofia, Heidi; Hutter, Carolyn; Getz, Gad; Wheeler, David; Ding, Li 分享 收藏
Reproducibility assessment of mutations calls in exome- and whole-genome sequencing using consensus calling from TCGA and ICGC Bailey, Matthew H.; Wang, Liang-Bo; Liang, Wen-Wei; Foltz, Steven; Dong, Guanlan; Wendl, Michael C.; McLellan, Michael; Hirbe, Angela C.; Simpson, Jared; Gerstein, Mark; Ding, Li 分享 收藏
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Pan-cancer analysis of somatic mutations across 21 neuroendocrine tumor types Cao, Yanan; Zhou, Weiwei; Li, Lin; Wang, Jiaqian; Gao, Zhibo; Jiang, Yiran; Jiang, Xiuli; Shan, Aijing; Bailey, Matthew H.; Huang, Kuan-Lin; Sun, Sam Q.; McLellan, Michael D.; Niu, Beifang; Wang, Weiqing; Ding, Li; Ning, Guang 分享 收藏
Scalable Open Science Approach for Mutation Calling of Tumor Exomes Using Multiple Genomic Pipelines 使用多个基因组管道对肿瘤外显子组进行突变调用的可扩展开放科学方法 Ellrott, Kyle; Bailey, Matthew H.; Saksena, Gordon; Covington, Kyle R.; Kandoth, Cyriac; Stewart, Chip; Hess, Julian; Ma, Singer; Chiotti, Kami E.; McLellan, Michael; Sofia, Heidi J.; Hutter, Carolyn; Getz, Gad; Wheeler, David; Ding, Li 分享 收藏
Protein-structure-guided discovery of functional mutations across 19 cancer types (vol 48, pg 827, 2016) Niu, Beifang; Scott, Adam D.; Sengupta, Sohini; Bailey, Matthew H.; Batra, Prag; Ning, Jie; Wyczalkowski, Matthew A.; Liang, Wen-Wei; Zhang, Qunyuan; McLellan, Michael D.; Sun, Sam Q.; Tripathi, Piyush; Lou, Carolyn; Ye, Kai; Mashl, R. Jay; Wallis, John; Wendl, Michael C.; Chen, Feng; Ding, Li 分享 收藏
Proteogenomic integration reveals therapeutic targets in breast cancer xenografts (vol 8, 14864, 2017) 蛋白质基因组整合揭示乳腺癌异种移植物的治疗靶点 (第8卷，14864，2017) Huang, Kuan-lin; Li, Shunqiang; Mertins, Philipp; Cao, Song; Gunawardena, Harsha P.; Ruggles, Kelly V.; Mani, D. R.; Clauser, Karl R.; Tanioka, Maki; Usary, Jerry; Kavuri, Shyam M.; Xie, Ling; Yoon, Christopher; Qiao, Jana W.; Wrobel, John; Wyczalkowski, Matthew A.; Erdmann-Gilmore, Petra; Snider, Jacqueline E.; Hoog, Jeremy; Singh, Purba; Niu, Beifang; Guo, Zhanfang; Sun, Sam Qiancheng; Sanati, Souzan; Kawaler, Emily; Wang, Xuya; Scott, Adam; Ye, Kai; McLellan, Michael D.; Wendl, Michael C.; Malovannaya, Anna; Held, Jason M.; Gillette, Michael A.; Fenyo, David; Kinsinger, Christopher R.; Mesri, Mehdi; Rodriguez, Henry; Davies, Sherri R.; Perou, Charles M.; Ma, Cynthia; Townsend, R. Reid; Chen, Xian; Carr, Steven A.; Ellis, Matthew J.; Ding, Li 分享 收藏
Proteogenomic integration reveals therapeutic targets in breast cancer xenografts 蛋白质基因组整合揭示乳腺癌异种移植物的治疗靶点 Huang, Kuan-lin; Li, Shunqiang; Mertins, Philipp; Cao, Song; Gunawardena, Harsha P.; Ruggles, Kelly V.; Mani, D. R.; Clauser, Karl R.; Tanioka, Maki; Usary, Jerry; Kavuri, Shyam M.; Xie, Ling; Yoon, Christopher; Qiao, Jana W.; Wrobel, John; Wyczalkowski, Matthew A.; Erdmann-Gilmore, Petra; Snider, Jacqueline E.; Hoog, Jeremy; Singh, Purba; Niu, Beifung; Guo, Zhanfang; Sun, Sam Qiancheng; Sanati, Souzan; Kawaler, Emily; Wang, Xuya; Scott, Adam; Ye, Kai; McLellan, Michael D.; Wendl, Michael C.; Malovannaya, Anna; Held, Jason M.; Gillette, Michael A.; Fenyo, David; Kinsinger, Christopher R.; Mesri, Mehdi; Rodriguez, Henry; Davies, Sherri R.; Perou, Charles M.; Ma, Cynthia; Townsend, R. Reid; Chen, Xian; Carr, Steven A.; Ellis, Matthew J.; Ding, Li 分享 收藏
Protein-structure-guided discovery of functional mutations across 19 cancer types Niu, Beifang; Scott, Adam D.; Sengupta, Sohini; Bailey, Matthew H.; Batra, Prag; Ning, Jie; Wyczalkowski, Matthew A.; Liang, Wen-Wei; Zhang, Qunyuan; McLellan, Michael D.; Sun, Sam Q.; Tripathi, Piyush; Lou, Carolyn; Ye, Kai; Mashl, R. Jay; Wallis, John; Wendl, Michael C.; Chen, Feng; Ding, Li 分享 收藏
SMN2 splice modulators enhance U1-pre-mRNA association and rescue SMA mice (vol 11, pg 511, 2015) Palacino, James; Swalley, Susanne E.; Song, Cheng; Cheung, Atwood K.; Shu, Lei; Zhang, Xiaolu; Van Hoosear, Mailin; Shin, Youngah; Chin, Donovan N.; Keller, Caroline Gubser; Beibel, Martin; Renaud, Nicole A.; Smith, Thomas M.; Salcius, Michael; Shi, Xiaoying; Hild, Marc; Servais, Rebecca; Jain, Monish; Deng, Lin; Bullock, Caroline; McLellan, Michael; Schuierer, Sven; Murphy, Leo; Blommers, Marcel J. J.; Blaustein, Cecile; Berenshteyn, Frada; Lacoste, Arnaud; Thomas, Jason R.; Roma, Guglielmo; Michaud, Gregory A.; Tseng, Brian S.; Porter, Jeffery A.; Myer, Vic E.; Tallarico, John A.; Hamann, Lawrence G.; Curtis, Daniel; Fishman, Mark C.; Dietrich, William F.; Dales, Natalie A.; Sivasankaran, Rajeev 分享 收藏
An Analysis of the Sensitivity of Proteogenomic Mapping of Somatic Mutations and Novel Splicing Events in Cancer 蛋白质基因组定位对癌症体细胞突变和新剪接事件的敏感性分析 Ruggles, Kelly V.; Tang, Zuojian; Wang, Xuya; Grover, Himanshu; Askenazi, Manor; Teubl, Jennifer; Cao, Song; McLellan, Michael D.; Clauser, Karl R.; Tabb, David L.; Mertins, Philipp; Slebos, Robbert; Erdmann-Gilmore, Petra; Li, Shunqiang; Gunawardena, Harsha P.; Xie, Ling; Liu, Tao; Zhou, Jian-Ying; Sun, Shisheng; Hoadley, Katherine A.; Perou, Charles M.; Chen, Xian; Davies, Sherri R.; Maher, Christopher A.; Kinsinger, Christopher R.; Rodland, Karen D.; Zhang, Hui; Zhang, Zhen; Ding, Li; Townsend, R. Reid; Rodriguez, Henry; Chan, Daniel; Smith, Richard D.; Liebler, Daniel C.; Carr, Steven A.; Payne, Samuel; Ellis, Matthew J.; Fenyo, David 分享 收藏
Patterns and functional implications of rare germline variants across 12 cancer types Lu, Charles; Xie, Mingchao; Wendl, Michael C.; Wang, Jiayin; McLellan, Michael D.; Leiserson, Mark D. M.; Huang, Kuan-lin; Wyczalkowski, Matthew A.; Jayasinghe, Reyka; Banerjee, Tapahsama; Ning, Jie; Tripathi, Piyush; Zhang, Qunyuan; Niu, Beifang; Ye, Kai; Schmidt, Heather K.; Fulton, Robert S.; McMichael, Joshua F.; Batra, Prag; Kandoth, Cyriac; Bharadwaj, Maheetha; Koboldt, Daniel C.; Miller, Christopher A.; Kanchi, Krishna L.; Eldred, James M.; Larson, David E.; Welch, John S.; You, Ming; Ozenberger, Bradley A.; Govindan, Ramaswamy; Walter, Matthew J.; Ellis, Matthew J.; Mardis, Elaine R.; Graubert, Timothy A.; Dipersio, John F.; Ley, Timothy J.; Wilson, Richard K.; Goodfellow, Paul J.; Raphael, Benjamin J.; Chen, Feng; Johnson, Kimberly J.; Parvin, Jeffrey D.; Ding, Li 分享 收藏
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