Daniel Pinkel - Publications, H-index & Citations

Daniel Pinkel

University of California System

71H指数

269论文数

2.9W被引数

收录论文 50

发表时间

QDNAseq: A bioinformatics pipeline for DNA copy number analysis from shallow whole genome sequencing with noise levels near the probabilistic lower limit imposed by read counting

CLINICAL CANCER RESEARCH

IF10.2

2016-01-03

PREAI

Sie, Daoud; Scheinin, Ilari; van Lieshout, Stef; Cordes, Martijn; Pinkel, Daniel; Albertson, Donna G.; van de Wiel, Mark A.; Ylstra, Bauke

DNA copy number analysis of fresh and formalin-fixed specimens by shallow whole-genome sequencing with identification and exclusion of problematic regions in the genome assembly 通过浅层全基因组测序对新鲜和福尔马林固定的标本进行DNA拷贝数分析，并鉴定和排除基因组组装中的问题区域

GENOME RESEARCH

IF5.5

2014-09-18

337

OAAI

Scheinin, Ilari; Sie, Daoud; Bengtsson, Henrik; van de Wie, Mark A.; Olshen, Adam B.; van Thuij, Hinke F.; van Essen, Hendrik F.; Eijk, Paul P.; Rustenburg, Francois; Meijer, Gerrit A.; Reijneveld, Jaap C.; Wesseling, Pieter; Pinke, Daniel; Albertson, Donna G.; Ylstra, Bauke

A genomic copy number biomarker to identify oral cancer patients at low risk for metastasis

CANCER RESEARCH

IF16.6

2012-04-01

PREAI

Bhattacharya, Aditi; Snijders, Antoine M.; Roy, Ritu; Hamilton, Gregory; Paquette, Jesse; Tokuyasu, Taku; Bengtsson, Henrik; Jordan, Richard C. K.; Olshen, Adam; Pinkel, Daniel; Schmidt, Brian L.; Albertson, Donna G.

Two Distinct Routes to Oral Cancer Differing in Genome Instability and Risk for Cervical Node Metastasis

CLINICAL CANCER RESEARCH

IF10.2

2011-11-14

OAAI

Bhattacharya, Aditi; Roy, Ritu; Snijders, Antoine M.; Hamilton, Gregory; Paquette, Jesse; Tokuyasu, Taku; Bengtsson, Henrik; Jordan, Richard C. K.; Olshen, Adam B.; Pinkel, Daniel; Schmidt, Brian L.; Albertson, Donna G.

Genome-Wide Copy Number Analysis of Circulating Tumor Cells (CTCs) from Metastatic Breast Cancer Patients

CANCER RESEARCH

IF16.6

2010-12-01

PREAI

Magbanua, M. J. M.; Sosa, E. V.; Scott, J. H.; Pinkel, D.; Rugo, H. S.; Park, J. W.

Association of copy number aberrations with oral cancer metastasis and progression of pre-malignant oral lesions

CANCER RESEARCH

IF16.6

2010-04-01

PREAI

Bhattachayra, Aditi; Snijders, Antoine M.; Roy, Ritu; Tokuyasu, Taku; Jordan, Richard C. K.; Olshen, Adam; Pinkel, Daniel; Schmidt, Brian L.; Albertson, Donna G.

Expanding the genetic spectrum of pigmentation

PIGMENT CELL & MELANOMA RESEARCH

IF2.6

2008-09-18

PREAI

Bastian, Boris C.; Pinkel, Daniel

High-efficiency microarray printer using fused-silica capillary tube printing pins

ANALYTICAL CHEMISTRY

IF6.7

2008-09-03

PREAI

Clark, Steve M.; Harnilton, Gregory E.; Nordmeyer, Robert A.; Uber, Donald; Cornell, Earl W.; Brown, Nils; Segraves, Richard; Davis, Randy; Albertson, Donna G.; Pinkel, Daniel

Distribution and significance of occult intraepidermal tumor cells surrounding primary melanoma

JOURNAL OF INVESTIGATIVE DERMATOLOGY

IF5.7

2008-08-01

OAAI

North, Jeffrey P.; Kageshita, Toshiro; Pinke, Daniel; Leboit, Philip E.; Bastian, Boris C.

Absence of PDGFRA mutations in primary melanoma

JOURNAL OF INVESTIGATIVE DERMATOLOGY

IF5.7

2008-02-01

OAAI

Curtin, John A.; Pinkel, Daniel; Bastian, Boris C.

Novel risk stratification of patients with neuroblastoma by genomic signature, which is independent of molecular signature

ONCOGENE

IF7.3

2007-07-16

PREAI

Tomioka, N.; Oba, S.; Ohira, M.; Misra, A.; Fridlyand, J.; Ishii, S.; Nakamura, Y.; Isogai, E.; Hirata, T.; Yoshida, Y.; Todo, S.; Kaneko, Y.; Albertson, D. G.; Pinkel, D.; Feuerstein, B. G.; Nakagawara, A.

Genome position and gene amplification

GENOME BIOLOGY

IF9.4

2007-06-21

OAAI

Gajduskova, Pavla; Snijders, Antoine M.; Kwek, Serena; Roydasgupta, Ritu; Fridlyand, Jane; Tokuyasu, Taku; Pinkel, Daniel; Albertson, Donna G.

Deletion of chromosome 11q predicts response to anthracycline-based chemotherapy in early breast cancer

CANCER RESEARCH

IF16.6

2007-01-18

OAAI

Climent, Joan; Dimitrow, Peter; Fridlyand, Jane; Palacios, Jose; Siebert, Reiner; Albertson, Donna G.; Gray, Joe W.; Pinkel, Daniel; Lluch, Ana; Martinez-Climent, Jose A.

Regional copy number-independent deregulation of transcription in cancer

NATURE GENETICS

IF31.8

2006-11-12

193

PREAI

Stransky, Nicolas; Vallot, Celine; Reyal, Fabien; Bernard-Pierrot, Isabelle; de Medina, Sixtina Gil Diez; Segraves, Rick; de Rycke, Yann; Elvin, Paul; Cassidy, Andrew; Spraggon, Carolyn; Graham, Alexander; Southgate, Jennifer; Asselain, Bernard; Allory, Yves; Abbou, Claude C.; Albertson, Donna G.; Thiery, Jean Paul; Chopin, Dominique K.; Pinkel, Daniel; Radvanyi, Francois

Chromosomal aberrations in angioimmunoblastic T-Cell lymphoma and peripheral T-Cell lymphoma unspecified: A matrix-based CGH approach

GENES CHROMOSOMES & CANCER

IF2.8

2006-10-16

PREAI

Thorns, Christoph; Bastian, Boris; Pinkel, Daniel; Roydasgupta, Ritu; Fridlyand, Jane; Merz, Hartmut; Krokowski, Manuela; Bernd, Heinz-Wolfram; Feller, Alfred Christian

Discovery of previously unidentified genomic disorders from the duplication architecture of the human genome

NATURE GENETICS

IF31.8

2006-08-13

533

PREAI

Sharp, Andrew J.; Hansen, Sierra; Selzer, Rebecca R.; Cheng, Ze; Regan, Regina; Hurst, Jane A.; Stewart, Helen; Price, Sue M.; Blair, Edward; Hennekam, Raoul C.; Fitzpatrick, Carrie A.; Segraves, Rick; Richmond, Todd A.; Guiver, Cheryl; Albertson, Donna G.; Pinkel, Daniel; Eis, Peggy S.; Schwartz, Stuart; Knight, Samantha J. L.; Eichler, Evan E.

Linkage disequilibrium and heritability of copy-number polymorphisms within duplicated regions of the human genome

AMERICAN JOURNAL OF HUMAN GENETICS

IF8.1

2006-08-01

294

OAAI

Locke, Devin P.; Sharp, Andrew J.; McCarroll, Steven A.; McGrath, Sean D.; Newman, Tera L.; Cheng, Ze; Schwartz, Stuart; Albertson, Donna G.; Pinkel, Daniel; Altshuler, David M.; Eichler, Evan E.

PI3-kinase subunits are infrequent somatic targets in melanoma

JOURNAL OF INVESTIGATIVE DERMATOLOGY

IF5.7

2006-07-01

OAAI

Curtin, John A.; Stark, Mitchell S.; Pinkel, Daniel; Hayward, Nicholas K.; Bastian, Boris C.

Breast tumor copy number aberration phenotypes and genomic instability

BMC CANCER

IF3.4

2006-04-18

250

OAAI

Fridlyand, J; Snijders, AM; Ylstra, B; Li, H; Olshen, A; Segraves, R; Dairkee, S; Tokuyasu, T; Ljung, BM; Jain, AN; McLennan, J; Ziegler, J; Chin, K; Devries, S; Feiler, H; Gray, JW; Waldman, F; Pinkel, D; Albertson, DG

Genomic analysis of tumors by array comparative genomic hybridization: More is better

CANCER RESEARCH

IF16.6

2006-04-03

PREAI

Albertson, DG; Snijders, AM; Fridlyand, J; Jordan, R; Pinkel, D; Schmidt, BL

研究方向