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Stephen M. J. Searle

wellcome trust sanger institute

42H指数
73论文数
3.6W被引数
收录论文 19
发表时间
The Ensembl gene annotation system
err2016-06-23
err616
errOAAI
errAken, Bronwen L.; Ayling, Sarah; Barrell, Daniel; Clarke, Laura; Curwen, Valery; Fairley, Susan; Banet, Julio Fernandez; Billis, Konstantinos; Giron, Carlos Garcia; Hourlier, Thibaut; Howe, Kevin; Kahari, Andreas; Kokocinski, Felix; Martin, Fergal J.; Murphy, Daniel N.; Nag, Rishi; Ruffier, Magali; Schuster, Michael; Tang, Y. Amy; Vogel, Jan-Hinnerk; White, Simon; Zadissa, Amonida; Flicek, Paul; Searle, Stephen M. J.
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The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons (vol 48, pg 427, 2016)
err2016-05-27
err5
errOAAI
errBraasch, Ingo; Gehrke, Andrew R.; Smith, Jeramiah J.; Kawasaki, Kazuhiko; Manousaki, Tereza; Pasquier, Jeremy; Amores, Angel; Desvignes, Thomas; Batzel, Peter; Catchen, Julian; Berlin, Aaron M.; Campbell, Michael S.; Barrell, Daniel; Martin, Kyle J.; Mulley, John F.; Ravi, Vydianathan; Lee, Alison P.; Nakamura, Tetsuya; Chalopin, Domitille; Fan, Shaohua; Wcisel, Dustin; Canestro, Cristian; Sydes, Jason; Beaudry, Felix E. G.; Sun, Yi; Hertel, Jana; Beam, Michael J.; Fasold, Mario; Ishiyama, Mikio; Johnson, Jeremy; Kehr, Steffi; Lara, Marcia; Letaw, John H.; Litman, Gary W.; Litman, Ronda T.; Mikami, Masato; Ota, Tatsuya; Saha, Nil Ratan; Williams, Louise; Stadler, Peter F.; Wang, Han; Taylor, John S.; Fontenot, Quenton; Ferrara, Allyse; Searle, Stephen M. J.; Aken, Bronwen; Yandell, Mark; Schneider, Igor; Yoder, Jeffrey A.; Volff, Jean-Nicolas; Meyer, Axel; Amemiya, Chris T.; Venkatesh, Byrappa; Holland, Peter W. H.; Guiguen, Yann; Bobe, Julien; Shubin, Neil H.; Di Palma, Federica; Alfoldi, Jessica; Lindblad-Toh, Kerstin; Postlethwait, John H.
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The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons斑点的gar基因组照亮了脊椎动物的进化并促进了人类与硬骨鱼的比较
err2016-03-07
err473
errOAAI
errBraasch, Ingo; Gehrke, Andrew R.; Smith, Jeramiah J.; Kawasaki, Kazuhiko; Manousaki, Tereza; Pasquier, Jeremy; Amores, Angel; Desvignes, Thomas; Batzel, Peter; Catchen, Julian; Berlin, Aaron M.; Campbell, Michael S.; Barrell, Daniel; Martin, Kyle J.; Mulley, John F.; Ravi, Vydianathan; Lee, Alison P.; Nakamura, Tetsuya; Chalopin, Domitille; Fan, Shaohua; Wcisel, Dustin; Canestro, Cristian; Sydes, Jason; Beaudry, Felix E. G.; Sun, Yi; Hertel, Jana; Beam, Michael J.; Fasold, Mario; Ishiyama, Mikio; Johnson, Jeremy; Kehr, Steffi; Lara, Marcia; Letaw, John H.; Litman, Gary W.; Litman, Ronda T.; Mikami, Masato; Ota, Tatsuya; Saha, Nil Ratan; Williams, Louise; Stadler, Peter F.; Wang, Han; Taylor, John S.; Fontenot, Quenton; Ferrara, Allyse; Searle, Stephen M. J.; Aken, Bronwen; Yandell, Mark; Schneider, Igor; Yoder, Jeffrey A.; Volff, Jean-Nicolas; Meyer, Axel; Amemiya, Chris T.; Venkatesh, Byrappa; Holland, Peter W. H.; Guiguen, Yann; Bobe, Julien; Shubin, Neil H.; Di Palma, Federica; Alfoeldi, Jessica; Lindblad-Toh, Kerstin; Postlethwait, John H.
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Ensembl comparative genomics resources
err2016-02-20
err297
errOAAI
errHerrero, Javier; Muffato, Matthieu; Beal, Kathryn; Fitzgerald, Stephen; Gordon, Leo; Pignatelli, Miguel; Vilella, Albert J.; Searle, Stephen M. J.; Amode, Ridwan; Brent, Simon; Spooner, William; Kulesha, Eugene; Yates, Andrew; Flicek, Paul
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Ensembl 2015
err2014-10-28
err1.1K
errOAAI
errCunningham, Fiona; Amode, M. Ridwan; Barrell, Daniel; Beal, Kathryn; Billis, Konstantinos; Brent, Simon; Carvalho-Silva, Denise; Clapham, Peter; Coates, Guy; Fitzgerald, Stephen; Gil, Laurent; Giron, Carlos Garcia; Gordon, Leo; Hourlier, Thibaut; Hunt, Sarah E.; Janacek, Sophie H.; Johnson, Nathan; Juettemann, Thomas; Kaehaeri, Andreas K.; Keenan, Stephen; Martin, Fergal J.; Maurel, Thomas; McLaren, William; Murphy, Daniel N.; Nag, Rishi; Overduin, Bert; Parker, Anne; Patricio, Mateus; Perry, Emily; Pignatelli, Miguel; Riat, Harpreet Singh; Sheppard, Daniel; Taylor, Kieron; Thormann, Anja; Vullo, Alessandro; Wilder, Steven P.; Zadissa, Amonida; Aken, Bronwen L.; Birney, Ewan; Harrow, Jennifer; Kinsella, Rhoda; Muffato, Matthieu; Ruffier, Magali; Searle, Stephen M. J.; Spudich, Giulietta; Trevanion, Stephen J.; Yates, Andy; Zerbino, Daniel R.; Flicek, Paul
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Current status and new features of the Consensus Coding Sequence database
err2013-11-11
err128
errOAAI
errFarrell, Catherine M.; O'Leary, Nuala A.; Harte, Rachel A.; Loveland, Jane E.; Wilming, Laurens G.; Wallin, Craig; Diekhans, Mark; Barrell, Daniel; Searle, Stephen M. J.; Aken, Bronwen; Hiatt, Susan M.; Frankish, Adam; Suner, Marie-Marthe; Rajput, Bhanu; Steward, Charles A.; Brown, Garth R.; Bennett, Ruth; Murphy, Michael; Wu, Wendy; Kay, Mike P.; Hart, Jennifer; Rajan, Jeena; Weber, Janet; Snow, Catherine; Riddick, Lillian D.; Hunt, Toby; Webb, David; Thomas, Mark; Tamez, Pamela; Rangwala, Sanjida H.; McGarvey, Kelly M.; Pujar, Shashikant; Shkeda, Andrei; Mudge, Jonathan M.; Gonzalez, Jose M.; Gilbert, James G. R.; Trevanion, Stephen J.; Baertsch, Robert; Harrow, Jennifer L.; Hubbard, Tim; Ostell, James M.; Haussler, David; Pruitt, Kim D.
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GENCODE: The reference human genome annotation for The ENCODE ProjectGENCODE: ENCODE项目的参考人类基因组注释
err2012-09-05
err3.9K
errOAAI
errHarrow, Jennifer; Frankish, Adam; Gonzalez, Jose M.; Tapanari, Electra; Diekhans, Mark; Kokocinski, Felix; Aken, Bronwen L.; Barrell, Daniel; Zadissa, Amonida; Searle, Stephen; Barnes, If; Bignell, Alexandra; Boychenko, Veronika; Hunt, Toby; Kay, Mike; Mukherjee, Gaurab; Rajan, Jeena; Despacio-Reyes, Gloria; Saunders, Gary; Steward, Charles; Harte, Rachel; Lin, Michael; Howald, Cedric; Tanzer, Andrea; Derrien, Thomas; Chrast, Jacqueline; Walters, Nathalie; Balasubramanian, Suganthi; Pei, Baikang; Tress, Michael; Manuel Rodriguez, Jose; Ezkurdia, Iakes; van Baren, Jeltje; Brent, Michael; Haussler, David; Kellis, Manolis; Valencia, Alfonso; Reymond, Alexandre; Gerstein, Mark; Guigo, Roderic; Hubbard, Tim J.
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Combining RT-PCR-seq and RNA-seq to catalog all genic elements encoded in the human genome
err2012-09-05
err47
errOAAI
errHowald, Cedric; Tanzer, Andrea; Chrast, Jacqueline; Kokocinski, Felix; Derrien, Thomas; Walters, Nathalie; Gonzalez, Jose M.; Frankish, Adam; Aken, Bronwen L.; Hourlier, Thibaut; Vogel, Jan-Hinnerk; White, Simon; Searle, Stephen; Harrow, Jennifer; Hubbard, Tim J.; Guigo, Roderic; Reymond, Alexandre
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Incorporating RNA-seq data into the zebrafish Ensembl genebuild
err2012-07-12
err105
errOAAI
errCollins, John E.; White, Simon; Searle, Stephen M. J.; Stemple, Derek L.
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Ensembl 2012
err2011-11-15
err862
errOAAI
errFlicek, Paul; Amode, M. Ridwan; Barrell, Daniel; Beal, Kathryn; Brent, Simon; Carvalho-Silva, Denise; Clapham, Peter; Coates, Guy; Fairley, Susan; Fitzgerald, Stephen; Gil, Laurent; Gordon, Leo; Hendrix, Maurice; Hourlier, Thibaut; Johnson, Nathan; Kaehaeri, Andreas K.; Keefe, Damian; Keenan, Stephen; Kinsella, Rhoda; Komorowska, Monika; Koscielny, Gautier; Kulesha, Eugene; Larsson, Pontus; Longden, Ian; McLaren, William; Muffato, Matthieu; Overduin, Bert; Pignatelli, Miguel; Pritchard, Bethan; Riat, Harpreet Singh; Ritchie, Graham R. S.; Ruffier, Magali; Schuster, Michael; Sobral, Daniel; Tang, Y. Amy; Taylor, Kieron; Trevanion, Stephen; Vandrovcova, Jana; White, Simon; Wilson, Mark; Wilder, Steven P.; Aken, Bronwen L.; Birney, Ewan; Cunningham, Fiona; Dunham, Ian; Durbin, Richard; Fernandez-Suarez, Xose M.; Harrow, Jennifer; Herrero, Javier; Hubbard, Tim J. P.; Parker, Anne; Proctor, Glenn; Spudich, Giulietta; Vogel, Jan; Yates, Andy; Zadissa, Amonida; Searle, Stephen M. J.
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Genome sequence of an Australian kangaroo, Macropus eugenii, provides insight into the evolution of mammalian reproduction and development
err2011-08-19
err162
errOAAI
errRenfree, Marilyn B.; Papenfuss, Anthony T.; Deakin, Janine E.; Lindsay, James; Heider, Thomas; Belov, Katherine; Rens, Willem; Waters, Paul D.; Pharo, Elizabeth A.; Shaw, Geoff; Swwong, Emily; Lefevre, Christophe M.; Nicholas, Kevin R.; Kuroki, Yoko; Wakefield, Matthew J.; Zenger, Kyall R.; Wang, Chenwei; Ferguson-Smith, Malcolm; Nicholas, Frank W.; Hickford, Danielle; Yu, Hongshi; Short, Kirsty R.; Siddle, Hannah V.; Frankenberg, Stephen R.; Chew, Keng Yih; Menzies, Brandon R.; Stringer, Jessica M.; Suzuki, Shunsuke; Hore, Timothy A.; Delbridge, Margaret L.; Mohammadi, Amir; Schneider, Nanette Y.; Hu, Yanqiu; O'Hara, William; Al Nadaf, Shafagh; Wu, Chen; Feng, Zhi-Ping; Cocks, Benjamin G.; Wang, Jianghui; Flicek, Paul; Searle, Stephen M. J.; Fairley, Susan; Beal, Kathryn; Herrero, Javier; Carone, Dawn M.; Suzuki, Yutaka; Sugano, Sumio; Toyoda, Atsushi; Sakaki, Yoshiyuki; Kondo, Shinji; Nishida, Yuichiro; Tatsumoto, Shoji; Mandiou, Ion; Hsu, Arthur; McColl, Kaighin A.; Lansdell, Benjamin; Weinstock, George; Kuczek, Elizabeth; McGrath, Annette; Wilson, Peter; Men, Artem; Hazar-Rethinam, Mehlika; Hall, Allison; Davis, John; Wood, David; Williams, Sarah; Sundaravadanam, Yogi; Muzny, Donna M.; Jhangiani, Shalini N.; Lewis, Lora R.; Morgan, Margaret B.; Okwuonu, Geoffrey O.; Ruiz, San Juana; Santibanez, Jireh; Nazareth, Lynne; Cree, Andrew; Fowler, Gerald; Kovar, Christie L.; Dinh, Huyen H.; Joshi, Vandita; Jing, Chyn; Lara, Fremiet; Thornton, Rebecca; Chen, Lei; Deng, Jixin; Liu, Yue; Shen, Joshua Y.; Song, Xing-Zhi; Edson, Janette; Troon, Carmen; Thomas, Daniel; Stephens, Amber; Yapa, Lankesha; Levchenko, Tanya; Gibbs, Richard A.; Cooper, Desmond W.; Speed, Terence P.; Fujiyama, Asao; Graves, Jennifer A. M.; O'Neill, Rachel J.; Pask, Andrew J.; Forrest, Susan M.; Worley, Kim C.
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Genome sequence of an Australian kangaroo, Macropus eugenii, provides insight into the evolution of mammalian reproduction and development (vol 12, pg R81, 2011)
err2011-01-01
err2
errOAAI
errRenfree, Marilyn B.; Papenfuss, Anthony T.; Deakin, Janine E.; Lindsay, James; Heider, Thomas; Belov, Katherine; Rens, Willem; Waters, Paul D.; Pharo, Elizabeth A.; Shaw, Geoff; Wong, Emily S. W.; Lefevre, Christophe M.; Nicholas, Kevin R.; Kuroki, Yoko; Wakefield, Matthew J.; Zenger, Kyall R.; Wang, Chenwei; Ferguson-Smith, Malcolm; Nicholas, Frank W.; Hickford, Danielle; Yu, Hongshi; Short, Kirsty R.; Siddle, Hannah V.; Frankenberg, Stephen R.; Chew, Keng Y.; Menzies, Brandon R.; Stringer, Jessica M.; Suzuki, Shunsuke; Hore, Timothy A.; Delbridge, Margaret L.; Patel, Hardip R.; Mohammadi, Amir; Schneider, Nanette Y.; Hu, Yanqiu; O'Hara, William; Al Nadaf, Shafagh; Wu, Chen; Feng, Zhi-Ping; Cocks, Benjamin G.; Wang, Jianghui; Flicek, Paul; Searle, Stephen M. J.; Fairley, Susan; Beal, Kathryn; Herrero, Javier; Carone, Dawn M.; Suzuki, Yutaka; Sugano, Sumio; Toyoda, Atsushi; Sakaki, Yoshiyuki; Kondo, Shinji; Nishida, Yuichiro; Tatsumoto, Shoji; Mandiou, Ion; Hsu, Arthur; McColl, Kaighin A.; Lansdell, Benjamin; Weinstock, George; Kuczek, Elizabeth; McGrath, Annette; Wilson, Peter; Men, Artem; Hazar-Rethinam, Mehlika; Hall, Allison; Davis, John; Wood, David; Williams, Sarah; Sundaravadanam, Yogi; Muzny, Donna M.; Jhangiani, Shalini N.; Lewis, Lora R.; Morgan, Margaret B.; Okwuonu, Geoffrey O.; Ruiz, San J.; Santibanez, Jireh; Nazareth, Lynne; Cree, Andrew; Fowler, Gerald; Kovar, Christie L.; Dinh, Huyen H.; Joshi, Vandita; Jing, Chyn; Lara, Fremiet; Thornton, Rebecca; Chen, Lei; Deng, Jixin; Liu, Yue; Shen, Joshua Y.; Song, Xing-Zhi; Edson, Janette; Troon, Carmen; Thomas, Daniel; Stephens, Amber; Yapa, Lankesha; Levchenko, Tanya; Gibbs, Richard A.; Cooper, Desmond W.; Speed, Terence P.; Fujiyama, Asao; Graves, Jennifer A. M.; O'Neill, Rachel J.; Pask, Andrew J.; Forrest, Susan M.; Worley, Kim C.
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Ensembl 2011
err2010-11-02
err620
errOAAI
errFlicek, Paul; Amode, M. Ridwan; Barrell, Daniel; Beal, Kathryn; Brent, Simon; Chen, Yuan; Clapham, Peter; Coates, Guy; Fairley, Susan; Fitzgerald, Stephen; Gordon, Leo; Hendrix, Maurice; Hourlier, Thibaut; Johnson, Nathan; Kaehaeri, Andreas; Keefe, Damian; Keenan, Stephen; Kinsella, Rhoda; Kokocinski, Felix; Kulesha, Eugene; Larsson, Pontus; Longden, Ian; McLaren, William; Overduin, Bert; Pritchard, Bethan; Riat, Harpreet Singh; Rios, Daniel; Ritchie, Graham R. S.; Ruffier, Magali; Schuster, Michael; Sobral, Daniel; Spudich, Giulietta; Tang, Y. Amy; Trevanion, Stephen; Vandrovcova, Jana; Vilella, Albert J.; White, Simon; Wilder, Steven P.; Zadissa, Amonida; Zamora, Jorge; Aken, Bronwen L.; Birney, Ewan; Cunningham, Fiona; Dunham, Ian; Durbin, Richard; Fernandez-Suarez, Xose M.; Herrero, Javier; Hubbard, Tim J. P.; Parker, Anne; Proctor, Glenn; Vogel, Jan; Searle, Stephen M. J.
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The GENCODE human gene set
err2010-01-01
err4
errOAAI
errSearle, S.; Frankish, A.; Bignell, A.; Aken, B.; Derrien, T.; Diekhans, M.; Harte, R.; Howald, C.; Kokocinski, F.; Lin, M.; Tress, M.; Van Baren, M.; Barnes, I.; Hunt, T.; Carvalho-Silva, D.; Davidson, C.; Donaldson, S.; Gilbert, J.; Kay, M.; Lloyd, D.; Loveland, J.; Mudge, J.; Snow, C.; Vamathevan, J.; Wilming, L.; Brent, M.; Gerstein, M.; Guigo, R.; Kellis, M.; Reymond, A.; Zadissa, A.; Valencia, A.; Harrow, J.; Hubbard, T.
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Ensembl's 10th year
err2009-11-11
err209
errOAAI
errFlicek, Paul; Aken, Bronwen L.; Ballester, Benoit; Beal, Kathryn; Bragin, Eugene; Brent, Simon; Chen, Yuan; Clapham, Peter; Coates, Guy; Fairley, Susan; Fitzgerald, Stephen; Fernandez-Banet, Julio; Gordon, Leo; Graef, Stefan; Haider, Syed; Hammond, Martin; Howe, Kerstin; Jenkinson, Andrew; Johnson, Nathan; Kaehaeri, Andreas; Keefe, Damian; Keenan, Stephen; Kinsella, Rhoda; Kokocinski, Felix; Koscielny, Gautier; Kulesha, Eugene; Lawson, Daniel; Longden, Ian; Massingham, Tim; McLaren, William; Megy, Karine; Overduin, Bert; Pritchard, Bethan; Rios, Daniel; Ruffier, Magali; Schuster, Michael; Slater, Guy; Smedley, Damian; Spudich, Giulietta; Tang, Y. Amy; Trevanion, Stephen; Vilella, Albert; Vogel, Jan; White, Simon; Wilder, Steven P.; Zadissa, Amonida; Birney, Ewan; Cunningham, Fiona; Dunham, Ian; Durbin, Richard; Fernandez-Suarez, Xose M.; Herrero, Javier; Hubbard, Tim J. P.; Parker, Anne; Proctor, Glenn; Smith, James; Searle, Stephen M. J.
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SCANPS: a web server for iterative protein sequence database searching by dynamic programing, with display in a hierarchical SCOP browser
err2008-05-19
err6
errOAAI
errWalsh, Thomas P.; Webber, Caleb; Searle, Stephen; Sturrock, Shane S.; Barton, Geoffrey J.
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Ensembl 2007
err2007-01-03
err720
errOAAI
errHubbard, T. J. P.; Aken, B. L.; Beal, K.; Ballester, B.; Caccamo, M.; Chen, Y.; Clarke, L.; Coates, G.; Cunningham, F.; Cutts, T.; Down, T.; Dyer, S. C.; Fitzgerald, S.; Fernandez-Banet, J.; Graf, S.; Haider, S.; Hammond, M.; Herrero, J.; Holland, R.; Howe, K.; Howe, K.; Johnson, N.; Kahari, A.; Keefe, D.; Kokocinski, F.; Kulesha, E.; Lawson, D.; Longden, I.; Melsopp, C.; Megy, K.; Meidl, P.; Overduin, B.; Parker, A.; Prlic, A.; Rice, S.; Rios, D.; Schuster, M.; Sealy, I.; Severin, J.; Slater, G.; Smedley, D.; Spudich, G.; Trevanion, S.; Vilella, A.; Vogel, J.; White, S.; Wood, M.; Cox, T.; Curwen, V.; Durbin, R.; Fernandez-Suarez, X. M.; Flicek, P.; Kasprzyk, A.; Proctor, G.; Searle, S.; Smith, J.; Ureta-Vidal, A.; Birney, E.
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The ensembl analysis pipeline
err2004-05-03
err115
errOAAI
errPotter, SC; Clarke, L; Curwen, V; Keenan, S; Mongin, E; Searle, SMJ; Stabenau, A; Storey, R; Clamp, M
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The Otter annotation system
err2004-05-03
err46
errOAAI
errSearle, SMJ; Gilbert, J; Iyer, V; Clamp, M
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