John Wooley

University of California System

H指数:34

被引数:6,529

个人简介

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教育背景

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工作经历

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荣誉奖项

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Ultrafast clustering algorithms for metagenomic sequence analysis

BRIEFINGS IN BIOINFORMATICS

IF7.7

2012-07-06406

OAAI

Internal organization of large protein families: Relationship between the sequence, structure, and function-based clustering

大型蛋白质家族的内部组织: 序列，结构和基于功能的聚类之间的关系

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

IF2.8

2011-05-318

OAAI

Community cyberinfrastructure for Advanced Microbial Ecology Research and Analysis: the CAMERA resource

NUCLEIC ACIDS RESEARCH

IF13.1

2010-11-02264

OAAI

TOPSAN: a dynamic web database for structural genomics

NUCLEIC ACIDS RESEARCH

IF13.1

2010-10-2015

OAAI

Expansion of the Protein Repertoire in Newly Explored Environments: Human Gut Microbiome Specific Protein Families

plos biology

IF3.6

2010-06-0359

OAAI

Structural and Functional Characterizations of SsgB, a Conserved Activator of Developmental Cell Division in Morphologically Complex Actinomycetes

JOURNAL OF BIOLOGICAL CHEMISTRY

IF3.9

2009-09-0132

OAAI

Xu, Qingping; Traag, Bjorn A.; Willemse, Joost; McMullan, Daniel; Miller, Mitchell D.; Elsliger, Marc-Andre; Abdubek, Polat; Astakhova, Tamara; Axelrod, Herbert L.; Bakolitsa, Constantina; Carlton, Dennis; Chen, Connie; Chiu, Hsiu-Ju; Chruszcz, Maksymilian; Clayton, Thomas; Das, Debanu; Deller, Marc C.; Duan, Lian; Ellrott, Kyle; Ernst, Dustin; Farr, Carol L.; Feuerhelm, Julie; Grant, Joanna C.; Grzechnik, Anna; Grzechnik, Slawomir K.; Han, Gye Won; Jaroszewski, Lukasz; Jin, Kevin K.; Klock, Heath E.; Knuth, Mark W.; Kozbial, Piotr; Krishna, S. Sri; Kumar, Abhinav; Marciano, David; Minor, Wladek; Mommaas, A. Mieke; Morse, Andrew T.; Nigoghossian, Edward; Nopakun, Amanda; Okach, Linda; Oommachen, Silvya; Paulsen, Jessica; Puckett, Christina; Reyes, Ron; Rife, Christopher L.; Sefcovic, Natasha; Tien, Henry J.; Trame, Christine B.; van den Bedem, Henry; Wang, Shuren; Weekes, Dana; Hodgson, Keith O.; Wooley, John; Deacon, Ashley M.; Godzik, Adam; Lesley, Scott A.; Wilson, Ian A.; van Wezel, Gilles P.

Crystal structure of the Fic (Filamentation Induced by cAMP) family protein SO4266 (gi|24375750) from Shewanella oneidensis MR-1 at 1.6 Å resolution

以1.6 Å 分辨率MR-1的Shewanella oneidensis的Fic (cAMP诱导的丝状) 家族蛋白SO4266 (gi | 24375750) 的晶体结构

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

IF2.8

2009-01-2922

Das, Debanu; Krishna, S. Sri; McMullan, Daniel; Miller, Mitchell D.; Xu, Qingping; Abdubek, Polat; Acosta, Claire; Astakhova, Tamara; Axelrod, Herbert L.; Burra, Prasad; Carlton, Dennis; Chiu, Hsiu-Ju; Clayton, Thomas; Deller, Marc C.; Duan, Lian; Elias, Ylva; Elsliger, Marc-Andre; Ernst, Dustin; Feuerhelm, Julie; Grzechnik, Anna; Grzechnik, Slawomir K.; Hale, Joanna; Han, Gye Won; Jaroszewski, Lukasz; Jin, Kevin K.; Klock, Heath E.; Knuth, Mark W.; Kozbial, Piotr; Kumar, Abhinav; Marciano, David; Morse, Andrew T.; Murphy, Kevin D.; Nigoghossian, Edward; Okach, Linda; Oommachen, Silvya; Paulsen, Jessica; Reyes, Ron; Rife, Christopher L.; Sefcovic, Natasha; Tien, Henry; Trame, Christine B.; Trout, Christina V.; van den Bedem, Henry; Weekes, Dana; White, Aprilfawn; Hodgson, Keith O.; Wooley, John; Deacon, Ashley M.; Godzik, Adam; Lesley, Scott A.; Wilson, Ian A.

Crystal structure of a novel Sm-like protein of putative cyanophage origin at 2.60 Å resolution

在2.60 Å 分辨率下，假定的噬菌体起源的新型Sm样蛋白的晶体结构

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

IF2.8

2009-01-2717

Das, Debanu; Kozbial, Piotr; Axelrod, Herbert L.; Miller, Mitchell D.; McMullan, Daniel; Krishna, S. Sri; Abdubek, Polat; Acosta, Claire; Astakbova, Tamara; Burra, Prasad; Carlton, Dennis; Chen, Connie; Chiu, Hsiu-Ju; Clayton, Thomas; Deller, Marc C.; Duan, Lian; Elias, Ylva; Elsliger, Marc-Andre; Ernst, Dustin; Farr, Carol; Feuerhelm, Julie; Grzechnik, Anna; Grzechnik, Slawomir K.; Hale, Joanna; Han, Gye Won; Jaroszewski, Lukasz; Jin, Kevin K.; Johnson, Hope A.; Klock, Heath E.; Knuth, Mark W.; Kumar, Abhinav; Marciano, David; Morse, Andrew T.; Murphy, Kevin D.; Nigoghossian, Edward; Nopakun, Amanda; Okach, Linda; Oommachen, Silvya; Paulsen, Jessica; Puckett, Christina; Reyes, Ron; Rife, Christopher L.; Sefcovic, Natasha; Sudek, Sebastian; Tien, Henry; Trame, Christine; Trout, Christina V.; van den Bedem, Henry; Weekes, Dana; White, Aprilfawn; Xu, Qingping; Hodgson, Keith O.; Wooley, John; Deacon, Ashley M.; Godzik, Adam; Lesley, Scott A.; Wilson, Ian A.

Crystal structure of a novel archaeal AAA plus ATPase SSO 1545 from Sulfolobus solfataricus

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

IF2.8

2008-12-169

OAAI

Xu, Qingping; Rife, Christopher L.; Carlton, Dennis; Miller, Mitchell D.; Krishna, S. Sri; Elsliger, Marc-Andre; Abdubek, Polat; Astakhova, Tamara; Chiu, Hsiu-Ju; Clayton, Thomas; Duan, Lian; Feuerhelm, Julie; Grzechnik, Slawomir K.; Hale, Joanna; Han, Gye Won; Jaroszewski, Lukasz; Jin, Kevin K.; Klock, Heath E.; Knuth, Mark W.; Kumar, Abhinav; McMullan, Daniel; Morse, Andrew T.; Nigoghossian, Edward; Okach, Linda; Oommachen, Silvya; Paulsen, Jessica; Reyes, Ron; van den Bedem, Henry; Hodgson, Keith O.; Wooley, John; Deacon, Ashley M.; Godzik, Adam; Lesley, Scott A.; Wilson, Ian A.

Crystal structures of MW1337R and lin2004: Representatives of a novel protein family that adopt a four-helical bundle fold

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

IF2.8

2008-03-063

PREAI

Kozbial, Piotr; Xu, Qingping; Chiu, Hsiu-Ju; McMullan, Daniel; Krishna, S. Sri; Miller, Mitchell D.; Abdubek, Polat; Acosta, Claire; Astakhova, Tamara; Axelrod, Herbert L.; Carlton, Dennis; Clayton, Thomas; Deller, Marc; Duan, Lian; Elias, Ylva; Elsliger, Marc-Andre; Feuerhelm, Julie; Grzechnik, Slawomir K.; Hale, Joanna; Han, Gye Won; Jaroszewski, Lukasz; Jin, Kevin K.; Klock, Heath E.; Knuth, Mark W.; Koesema, Eric; Kumar, Abhinav; Marciano, David; Morse, Andrew T.; Murphy, Kevin D.; Nigoghossian, Edward; Okach, Linda; Oommachen, Silvya; Reyes, Ron; Rife, Christopher L.; Spraggon, Glen; Trout, Christina V.; van den Bedem, Henry; Weekes, Dana; White, Aprilfawn; Wolf, Guenter; Zubieta, Chloe; Hodgson, Keith O.; Wooley, John; Deacon, Ashley M.; Godzik, Adam; Lesley, Scott A.; WilSon, Ian A.

Crystal structure of an ADP-ribosylated protein with a cytidine deaminase-like fold, but unknown function (TM1506), from Thermotoga maritima at 2.70 Å resolution

来自thermotogaritima的具有胞苷脱氨酶样折叠但功能未知的ADP-核糖基化蛋白的晶体结构 (TM1506)，分辨率为2.70 Å

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

IF2.8

2008-02-147

OAAI

Xu, Qingping; Kozbial, Piotr; McMullan, Daniel; Krishna, S. Sri; Brittain, Scott M.; Ficarro, Scott B.; DiDonato, Michael; Miller, Mitchell D.; Abdubek, Polat; Axelrod, Herbert L.; Chiu, Hsiu-Ju; Clayton, Thomas; Duan, Lian; Elsliger, Marc-Andre; Feuerhelm, Julie; Grzechnik, Slawomir K.; Hale, Joanna; Han, Gye Won; Jaroszewski, Lukasz; Klock, Heath E.; Morse, Andrew T.; Nigoghossian, Edward; Paulsen, Jessica; Reyes, Ron; Rife, Christopher L.; van den Bedem, Henry; White, Aprilfawn; Hodgson, Keith O.; Wooley, John; Deacon, Ashley M.; Godzik, Adam; Lesley, Scott A.; Wilson, Ian A.

Crystal structure of AICAR transformylase IMP cyclohydrolase (TM1249) from Thermotoga maritima at 1.88 Å resolution

来自Thermotoga maritima的AICAR转化酶IMP环水解酶 (TM1249) 的晶体结构，分辨率为1.88 Å

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

IF2.8

2008-02-079

Axelrod, Herbert L.; McMullan, Daniel; Krishna, S. Sri; Miller, Mitchell D.; Elsliger, Marc-Andre; Abdubek, Polat; Ambing, Eileen; Astakhova, Tamara; Carlton, Dennis; Chiu, Hsiu-Ju; Clayton, Thomas; Duan, Lian; Feuerhelm, Julie; Grzechnik, Slawomir K.; Hale, Joanna; Han, Gye Won; Haugen, Justin; Jaroszewski, Lukasz; Jin, Kevin K.; Klock, Heath E.; Knuth, Mark W.; Koesema, Eric; Morse, Andrew T.; Nigoghossian, Edward; Okach, Linda; Oommachen, Silvya; Paulsen, Jessica; Quijano, Kevin; Reyes, Ron; Rife, Christopher L.; van den Bedem, Henry; Weekes, Dana; White, Aprilfawn; Wolf, Guenter; Xu, Qingping; Hodgson, Keith O.; Wooley, John; Deacon, Ashley M.; Godzik, Adam; Lesley, Scott A.; Wilson, Ian A.

Crystal structure of 2-keto-3-deoxygluconate kinase (TM0067) from Thermotoga maritima at 2.05 Å resolution

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

IF2.8

2007-11-148

OAAI

Mathews, Irimpan I.; McMullan, Daniel; Miller, Mitchell D.; Canaves, Jaume M.; Elsliger, Marc-Andre; Floyd, Ross; Grzechnik, Slawomir K.; Jaroszewski, Lukasz; Klock, Heath E.; Koesema, Eric; Kovarik, John S.; Kreusch, Andreas; Kuhn, Peter; McPhillips, Timothy M.; Morse, Andrew T.; Quijano, Kevin; Rife, Christopher L.; Schwarzenbacher, Robert; Spraggon, Glen; Stevens, Raymond C.; van den Bedem, Henry; Weekes, Dana; Wolf, Guenter; Hodgson, Keith O.; Wooley, John; Deacon, Ashley M.; Godzik, Adam; Lesley, Scott A.; Wilson, Ian A.

Crystal structure of MtnX phosphatase from Bacillus subtilis at 2.0 Å resolution provides a structural basis for bipartite phosphomonoester hydrolysis of 2-hydroxy3-keto-5-methylthiopentenyl-1-phosphate

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

IF2.8

2007-07-257

PREAI

Xu, Qingping; Saikatendu, Kumar Singh; Krishna, S. Sri; McMullan, Daniel; Abdubek, Polat; Agarwalla, Sanjay; Ambing, Eileen; Astakhova, Tamara; Axelrod, Herbert L.; Carlton, Dennis; Chiu, Hsiu-Ju; Clayton, Thomas; DiDonato, Michael; Duan, Lian; Elsliger, Marc-Andr; Feuerhelm, Julie; Grzechnik, Slawomir K.; Hale, Joanna; Hampton, Eric; Han, Gye Won; Haugen, Justin; Jaroszewski, Lukasz; Jin, Kevin K.; Klock, Heath E.; Knuth, Mark W.; Koesema, Eric; Miller, Mitchell D.; Morse, Andrew T.; Nigoghossian, Edward; Mach, Linda; Oommachen, Silvya; Paulsen, Jessica; Reyes, Ron; Rife, Christopher L.; Schwarzenbacher, Robert; van den Bedem, Henry; White, Aprilfawn; Wolf, Guenter; Hodgson, Keith O.; Wooley, John; Deacon, Ashley M.; Godzik, Adam; Lesley, Scott A.; Wilson, Ian A.

Identification and structural characterization of heme binding in a novel dye-decolorizing peroxidase, TyrA

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

IF2.8

2007-07-2475

PREAI

Zubieta, Chloe; Joseph, Rosanne; Krishna, S. Sri; McMullan, Daniel; Kapoor, Milli; Axelrod, Herbert L.; Miller, Mitchell D.; Abdubek, Polat; Acosta, Claire; Astakhova, Tamara; Carlton, Dennis; Chiu, Hsiu-Ju; Clayton, Thomas; Deller, Marc C.; Duan, Lian; Elias, Ylva; Elsliger, Marc-Andre; Feuerhelm, Julie; Grzechnik, Slawomir K.; Hale, Joanna; Han, Gye Won; Jaroszewski, Lukasz; Jin, Kevin K.; Klock, Heath E.; Knuth, Mark W.; Kozbial, Piotr; Kumar, Abhinav; Marciano, David; Morse, Andrew T.; Murphy, Kevin D.; Nigoghossian, Edward; Okach, Linda; Oommachen, Silvya; Reyes, Ron; Rife, Christopher L.; Schimmel, Paul; Trout, Christina V.; van den Bedem, Henry; Weekes, Dana; White, Aprilfawn; Xu, Qingping; Hodgson, Keith O.; Wooley, John; Deacon, Ashley M.; Godzik, Adam; Lesley, Scott A.; Wilson, Ian A.

Crystal structures of two novel dye-decolorizing peroxidases reveal a β-barrel fold with a conserved heme-binding motif

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

IF2.8

2007-07-2492

PREAI

Zubieta, Chloe; Krishna, S. Sri; Kapoor, Mili; Kozbial, Piotr; McMullan, Daniel; Axelrod, Herbert L.; Miller, Mitchell D.; Abdubek, Polat; Ambing, Eileen; Astakhova, Tamara; Carlton, Dennis; Chiu, Hsiu-Ju; Clayton, Thomas; Deller, Marc C.; Duan, Lian; Elsliger, Marc-Andre; Feuerhelm, Julie; Grzechnik, Slawomir K.; Hale, Joanna; Hampton, Eric; Han, Gye Won; Jaroszewski, Lukasz; Jin, Kevin K.; Klock, Heath E.; Knuth, Mark W.; Kumar, Abhinav; Marciano, David; Morse, Andrew T.; Nigoghossian, Edward; Mach, Linda; Oommachen, Silvya; Reyes, Ron; Rife, Christopher L.; Schimmel, Paul; van den Bedem, Henry; Weekes, Dana; White, Aprilfawn; Xu, Qingping; Hodgson, Keith O.; Wooley, John; Deacon, Ashley M.; Godzik, Adam; Lesley, Scott A.; Wilson, Ian A.

Crystal structure of NMA1982 from Neisseria meningitidis at 1.5 Å resolution provides a structural scaffold for nonclassical, eukaryotic-like phosphatases

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

IF2.8

2007-07-1610

PREAI

Krishna, S. Sri; Tautz, Lutz; Xu, Qingping; McMullan, Daniel; Miller, Mitchell D.; Abdubek, Polat; Ambing, Eileen; Astakhova, Tamara; Axelrod, Herbert L.; Carlton, Dennis; Chiu, Hsiu-Ju; Clayton, Thomas; DiDonato, Michael; Duan, Lian; Elsliger, Marc-Andre; Grzechnik, Slawomir K.; Hale, Joanna; Hampton, Eric; Han, Gye Won; Haugen, Justin; Jaroszewski, Lukasz; Jin, Kevin K.; Klock, Heath E.; Knuth, Mark W.; Koesema, Eric; Morse, Andrew T.; Mustelin, Tomas; Nigoghossian, Edward; Oommachen, Silvya; Reyes, Ron; Rife, Christopher L.; van den Bedem, Henry; Weekes, Dana; White, Aprilfawn; Hodgson, Keith O.; Wooley, John; Deacon, Ashley M.; Godzik, Adam; Lesley, Scott A.; Wilson, Ian A.

Crystal structure of homoserine O-succinyltransferase from Bacillus cereus at 2.4 Å resolution

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

IF2.8

2007-06-0114

Zubieta, Chloe; Krishna, S. Sri; McMullan, Daniel; Miller, Mitchell D.; Abdubek, Polat; Agarwalla, Sanjay; Ambing, Eileen; Astakhova, Tamara; Axelrod, Herbert L.; Carlton, Dennis; Chiu, Hsiu-Ju; Clayton, Thomas; Deller, Marc; DiDonato, Michael; Duan, Lian; Elsliger, Marc-Andre; Grzechnik, Slawomir K.; Hale, Joanna; Hampton, Eric; Han, Gye Won; Haugen, Justin; Jaroszewski, Lukasz; Jin, Kevin K.; Klock, Heath E.; Knuth, Mark W.; Koesema, Eric; Kumar, Abhinav; Marciano, David; Morse, Andrew T.; Nigoghossian, Edward; Oommachen, Silvya; Reyes, Ron; Rife, Christopher L.; van den Bedem, Henry; Weekes, Dana; White, Aprilfawn; Xu, Qingping; Hodgson, Keith O.; Wooley, John; Deacon, Ashley M.; Godzik, Adam; Lesley, Scott A.; Wilson, Ian A.

Crystal structure of TM1030 from Thermotoga maritima at 2.3 Å resolution reveals molecular details of its transcription repressor function

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

IF2.8

2007-04-195

OAAI

Premkumar, Lakshmanane; Rife, Christopher L.; Krishna, S. Sri; McMullan, Daniel; Miller, Mitchell D.; Abdubek, Polat; Ambing, Eileen; Astakhova, Tamara; Axelrod, Herbert L.; Canaves, Jaume M.; Carlton, Dennis; Chiu, Hsiu-Ju; Clayton, Thomas; DiDonato, Michael; Duan, Lian; Elsliger, Marc-Andre; Feuerhelm, Julie; Floyd, Ross; Grzechnik, Slawomir K.; Hale, Joanna; Hampton, Eric; Han, Gye Won; Haugen, Justin; Jaroszewski, Lukasz; Jin, Kevin K.; Klock, Heath E.; Knuth, Mark W.; Koesema, Eric; Kovarik, John S.; Kreusch, Andreas; Levin, Inna; McPhillips, Timothy M.; Morse, Andrew T.; Nigoghossian, Edward; Okach, Linda; Oommachen, Silvya; Paulsen, Jessica; Quijano, Kevin; Reyes, Ron; Rezezadeh, Fred; Rodionov, Dmitry; Schwarzenbacher, Robert; Spraggon, Glen; van den Bedem, Henry; White, Aprilfawn; Wolf, Guenter; Xu, Qingping; Hodgson, Keith O.; Wooley, John; Deacon, Ashley M.; Godzik, Adam; Lesley, Scott A.; Wilson, Ian A.

Crystal structure of a transcription regulator (TM1602) from Thermotoga maritima at 2.3 Å resolution

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

IF2.8

2007-01-269

OAAI

John Wooley

个人简介

教育背景

工作经历

荣誉奖项

研究方向