Surendra S. Negi - Publications, H-index & Citations

Surendra S. Negi

University of Texas Medical Branch

22H指数

81论文数

1.3K被引数

收录论文 24

发表时间

AllergenAI: a deep learning model predicting allergenicity based on protein sequence AllergenAI：一种基于蛋白质序列预测过敏原性的深度学习模型

BMC Bioinformatics

IF3.3

2025-11-19

OAAI

Jiajia Liu; Surendra S. Negi; Chengyuan Yang; Xiaobo Zhou; Catherine H. Schein; Werner Braun; Pora Kim

Fine resolution of the N-terminal IgE-binding epitope of Ara h 2: Discovery of variants with enhanced IgE binding Ara h 2的N端IgE结合表位的精细解析：发现具有增强IgE结合能力的变体

Journal of Allergy and Clinical Immunology

IF11.2

2025-04-29

PREAI

Joshua S. Bernstein; Nicole Canon; Catherine H. Schein; Werner Braun; Surendra S. Negi; Raffi Tchekmedyian; Marina Pozzoli; Edwin H. Kim; Michael D. Kulis; Thao Vu; Weimin Liu; Xueni Chen; Stephen C. Dreskin

Impact of AlphaFold on structure prediction of protein complexes: The CASP15-CAPRI experiment AlphaFold对蛋白质复合物结构预测影响的CASP15-CAPRI实验

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

IF2.8

2023-10-31

OAAI

Lensink, Marc F.; Brysbaert, Guillaume; Raouraoua, Nessim; Bates, Paul A.; Giulini, Marco; Honorato, Rodrigo V.; van Noort, Charlotte; Teixeira, Joao M. C.; Bonvin, Alexandre M. J. J.; Kong, Ren; Shi, Hang; Lu, Xufeng; Chang, Shan; Liu, Jian; Guo, Zhiye; Chen, Xiao; Morehead, Alex; Roy, Raj S.; Wu, Tianqi; Giri, Nabin; Quadir, Farhan; Chen, Chen; Cheng, Jianlin; Del Carpio, Carlos A.; Ichiishi, Eichiro; Rodriguez-Lumbreras, Luis A.; Fernandez-Recio, Juan; Harmalkar, Ameya; Chu, Lee-Shin; Canner, Sam; Smanta, Rituparna; Gray, Jeffrey J.; Li, Hao; Lin, Peicong; He, Jiahua; Tao, Huanyu; Huang, Sheng-You; Roel-Touris, Jorge; Jimenez-Garcia, Brian; Christoffer, Charles W.; Jain, Anika J.; Kagaya, Yuki; Kannan, Harini; Nakamura, Tsukasa; Terashi, Genki; Verburgt, Jacob C.; Zhang, Yuanyuan; Zhang, Zicong; Fujuta, Hayato; Sekijima, Masakazu; Kihara, Daisuke; Khan, Omeir; Kotelnikov, Sergei; Ghani, Usman; Padhorny, Dzmitry; Beglov, Dmitri; Vajda, Sandor; Kozakov, Dima; Negi, Surendra S.; Ricciardelli, Tiziana; Barradas-Bautista, Didier; Cao, Zhen; Chawla, Mohit; Cavallo, Luigi; Oliva, Romina; Yin, Rui; Cheung, Melyssa; Guest, Johnathan D.; Lee, Jessica; Pierce, Brian G.; Shor, Ben; Cohen, Tomer; Halfon, Matan; Schneidman-Duhovny, Dina; Zhu, Shaowen; Yin, Rujie; Sun, Yuanfei; Shen, Yang; Maszota-Zieleniak, Martyna; Bojarski, Krzysztof K.; Lubecka, Emilia A.; Marcisz, Mateusz; Danielsson, Annemarie; Dziadek, Lukasz; Gaardlos, Margrethe; Gieldon, Artur; Liwo, Adam; Samsonov, Sergey A.; Slusarz, Rafal; Zieba, Karolina; Sieradzan, Adam K.; Czaplewski, Cezary; Kobayashi, Shinpei; Miyakawa, Yuta; Kiyota, Yasuomi; Takeda-Shitaka, Mayuko; Olechnovic, Kliment; Valancauskas, Lukas; Dapkunas, Justas; Venclovas, Ceslovas; Wallner, Bjorn; Yang, Lin; Hou, Chengyu; He, Xiaodong; Guo, Shuai; Jiang, Shenda; Ma, Xiaoliang; Duan, Rui; Qui, Liming; Xu, Xianjin; Zou, Xiaoqin; Velankar, Sameer; Wodak, Shoshana J.

Still SDAPing Along: 20 Years of the Structural Database of Allergenic Proteins

FRONTIERS IN ALLERGY

IF3.1

2022-03-22

OAAI

Schein, Catherine H.; Negi, Surendra S.; Braun, Werner

Regional and temporal coordinated mutation patterns in SARS-CoV-2 spike protein revealed by a clustering and network analysis

SCIENTIFIC REPORTS

IF3.9

2022-01-21

OAAI

Negi, Surendra S.; Schein, Catherine H.; Braun, Werner

The importance of the 2S albumins for allergenicity and cross-reactivity of peanuts, tree nuts, and sesame seeds

JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY

IF11.2

2021-04-01

OAAI

Dreskin, Stephen C.; Koppelman, Stef J.; Andorf, Sandra; Nadeau, Kari C.; Kalra, Anjeli; Braun, Werner; Negi, Surendra S.; Chen, Xueni; Schein, Catherine H.

IgE binding to linear epitopes of Ara h 2 in peanut allergic preschool children undergoing oral Immunotherapy 接受口服免疫治疗的花生过敏学龄前儿童中IgE与Ara h 2线性表位的结合

PEDIATRIC ALLERGY AND IMMUNOLOGY

IF4.5

2019-10-21

OAAI

Dreskin, Stephen C.; Germinaro, Matthew; Reinhold, Dominik; Chen, Xueni; Vickery, Brian P.; Kulis, Michael; Burks, A. Wesley; Negi, Surendra S.; Braun, Werner; Chambliss, Jeffery M.; Eglite, Spodra; McNulty, Caitlin M. G.

Antibody-Mediated Protective Mechanisms Induced by a Trivalent Parainfluenza Virus-Vectored Ebolavirus Vaccine 三价副流感病毒载体埃博拉病毒疫苗诱导的抗体介导的保护机制

JOURNAL OF VIROLOGY

IF3.8

2019-02-15

OAAI

Kimble, J. Brian; Malherbe, Delphine C.; Meyer, Michelle; Gunn, Bronwyn M.; Karim, Marcus M.; Ilinykh, Philipp A.; Iampietro, Mathieu; Mohamed, Khaled S.; Negi, Surendra; Gilchuk, Pavlo; Huang, Kai; Wolf, Yuri I.; Braun, Werner; Crowe, James E.; Alter, Galit; Bukreyev, Alexander

Distinguishing allergens from non-allergenic homologues using Physical-Chemical Property (PCP) motifs

MOLECULAR IMMUNOLOGY

IF3

2018-07-01

OAAI

Lu, Wenzhe; Negi, Surendra S.; Schein, Catherine H.; Maleki, Soheila J.; Hurlburt, Barry K.; Braun, Werner

Functional classification of protein toxins as a basis for bioinformatic screening

SCIENTIFIC REPORTS

IF3.9

2017-10-24

OAAI

Negi, Surendra S.; Schein, Catherine H.; Ladics, Gregory S.; Mirsky, Henry; Chang, Peter; Rascle, Jean-Baptiste; Kough, John; Sterck, Lieven; Papineni, Sabitha; Jez, Joseph M.; Mouries, Lucilia Pereira; Braun, Werner

A Conserved Structural Signature of the Homeobox Coding DNA in HOX genes

SCIENTIFIC REPORTS

IF3.9

2016-10-14

OAAI

Fongang, Bernard; Kong, Fanping; Negi, Surendra; Braun, Werner; Kudlicki, Andrzej

Prediction and Classification of Allergenicity within Protein Families

JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY

IF11.2

2016-02-01

OAAI

Negi, Surendra; Midoro-Horiuti, Terumi; Kearney, Chris; Goldblum, Randall M.; Braun, Werner