Andrzej Stasiak - Publications, H-index & Citations

Andrzej Stasiak

swiss institute of bioinformatics

61H指数

244论文数

1.3W被引数

收录论文 82

发表时间

Topology in soft and biological matter 软物质和生物物质中的拓扑学

PHYSICS REPORTS-REVIEW SECTION OF PHYSICS LETTERS

IF29.5

2024-07-01

OAAI

Tubiana, Luca; Alexander, Gareth P.; Barbensi, Agnese; Buck, Dorothy; Cartwright, Julyan H. E.; Chwastyk, Mateusz; Cieplak, Marek; Coluzza, Ivan; Copar, Simon; Craik, David J.; Di Stefano, Marco; Everaers, Ralf; Faisca, Patricia F. N.; Ferrari, Franco; Giacometti, Achille; Goundaroulis, Dimos; Haglund, Ellinor; Hou, Ya-Ming; Ilieva, Nevena; Jackson, Sophie E.; Japaridze, Aleksandre; Kaplan, Noam; Klotz, Alexander R.; Li, Hongbin; Likos, Christos N.; Locatelli, Emanuele; Lopez-Leon, Teresa; Machon, Thomas; Micheletti, Cristian; Michieletto, Davide; Niemi, Antti; Niemyska, Wanda; Niewieczerzal, Szymon; Nitti, Francesco; Orlandini, Enzo; Pasquali, Samuela; Perlinska, Agata P.; Podgornik, Rudolf; Potestio, Raffaello; Pugno, Nicola M.; Ravnik, Miha; Ricca, Renzo; Rohwer, Christian M.; Rosa, Angelo; Smrek, Jan; Souslov, Anton; Stasiak, Andrzej; Steer, Daniele; Sulkowska, Joanna; Sulkowski, Piotr; Sumners, De Witt L.; Svaneborg, Carsten; Szymczak, Piotr; Tarenzi, Thomas; Travasso, Rui; Virnau, Peter; Vlassopoulos, Dimitris; Ziherl, Primoz; Zumer, Slobodan

AlphaFold Blindness to Topological Barriers Affects Its Ability to Correctly Predict Proteins' Topology

MOLECULES

IF4.6

2023-11-07

OAAI

Dabrowski-Tumanski, Pawel; Stasiak, Andrzej

Fission yeast Rad51 and Dmc1, two efficient DNA recombinases forming helical nucleoprotein filaments

MOLECULAR AND CELLULAR BIOLOGY

IF2.7

2023-03-27

OAAI

Sauvageau, S; Stasiak, AZ; Banville, I; Ploquin, M; Stasiak, A; Masson, JY

A glycine-arginine domain in control of the human MRE11 DNA repair protein

MOLECULAR AND CELLULAR BIOLOGY

IF2.7

2023-03-27

OAAI

Dery, Ugo; Coulombe, Yan; Rodrigue, Amelie; Stasiak, Andrzej; Richard, Stephane; Masson, Jean-Yves

Chromatin Is Frequently Unknotted at the Megabase Scale

BIOPHYSICAL JOURNAL

IF3.1

2020-05-01

OAAI

Goundaroulis, Dimos; Aiden, Erez Lieberman; Stasiak, Andrzej

Grid diagrams as tools to investigate knot spaces and topoisomerase-mediated simplification of DNA topology

SCIENCE ADVANCES

IF12.5

2020-02-28

OAAI

Barbensi, Agnese; Celoria, Daniele; Harrington, Heather A.; Stasiak, Andrzej; Buck, Dorothy

Closing the DNA replication cycle: from simple circular molecules to supercoiled and knotted DNA catenanes 关闭DNA复制周期: 从简单的环状分子到超螺旋和打结的DNA链

NUCLEIC ACIDS RESEARCH

IF13.1

2019-07-05

OAAI

Schvartzman, Jorge B.; Hernandez, Pablo; Krimer, Dora B.; Dorier, Julien; Stasiak, Andrzej

KnotProt 2.0: a database of proteins with knots and other entangled structures KnotProt 2.0: 具有结和其他纠缠结构的蛋白质数据库

NUCLEIC ACIDS RESEARCH

IF13.1

2018-12-01

OAAI

Dabrowski-Tumanski, Pawel; Rubach, Pawel; Goundaroulis, Dimos; Dorier, Julien; Sulkowski, Piotr; Millett, Kenneth C.; Rawdon, Eric J.; Stasiak, Andrzej; Sulkowska, Joanna I.

Are TADs supercoiled?TADs是超级螺旋吗？

NUCLEIC ACIDS RESEARCH

IF13.1

2018-11-05

OAAI

Racko, Dusan; Benedetti, Fabrizio; Dorier, Julien; Stasiak, Andrzej

Two convergent pathways of DNA knotting in replicating DNA molecules as revealed by θ-curve analysis

NUCLEIC ACIDS RESEARCH

IF13.1

2018-06-30

OAAI

O'Donnol, Danielle; Stasiak, Andrzej; Buck, Dorothy

Transcription-induced supercoiling as the driving force of chromatin loop extrusion during formation of TADs in interphase chromosomes 转录诱导的超卷是间期染色体TADs形成过程中染色质环挤出的驱动力

NUCLEIC ACIDS RESEARCH

IF13.1

2017-11-13

OAAI

Racko, Dusan; Benedetti, Fabrizio; Dorier, Julien; Stasiak, Andrzej

Transcription-induced supercoiling explains formation of self-interacting chromatin domains in S-pombe 转录诱导的超卷解释了s-pombe中自我相互作用的染色质结构域的形成

NUCLEIC ACIDS RESEARCH

IF13.1

2017-08-11

OAAI

Benedetti, Fabrizio; Racko, Dusan; Dorier, Julien; Burnier, Yannis; Stasiak, Andrzej

Model of DNA topology simplification has come full (supercoiled) circle after two decades of research Comment on Disentangling DNA molecules by Alexander Vologodskii

PHYSICS OF LIFE REVIEWS

IF14.3

2016-09-01

PREAI

Stasiak, Andrzej

How topoisomerase IV can efficiently unknot and decatenate negatively supercoiled DNA molecules without causing their torsional relaxation 拓扑异构酶IV如何有效地解开并使负超螺旋DNA分子脱节而不引起其扭转松弛

NUCLEIC ACIDS RESEARCH

IF13.1

2016-04-22

OAAI

Rawdon, Eric J.; Dorier, Julien; Racko, Dusan; Millett, Kenneth C.; Stasiak, Andrzej

Presence control of DNA repair controllers

CELL CYCLE

IF3.4

2015-07-15

OAAI

Stasiak, Andrzej

Generation of supercoils in nicked and gapped DNA drives DNA unknotting and postreplicative decatenation 在带缺口和间隙的DNA中产生超螺旋会驱动DNA解结和后复制性去变性

NUCLEIC ACIDS RESEARCH

IF13.1

2015-07-06

OAAI

Racko, Dusan; Benedetti, Fabrizio; Dorier, Julien; Burnier, Yannis; Stasiak, Andrzej

Subknots in ideal knots, random knots, and knotted proteins

SCIENTIFIC REPORTS

IF3.9

2015-03-10

OAAI

Rawdon, Eric J.; Millett, Kenneth C.; Stasiak, Andrzej

Effects of physiological self-crowding of DNA on shape and biological properties of DNA molecules with various levels of supercoiling DNA的生理自拥挤对不同超卷水平DNA分子形状和生物学特性的影响

NUCLEIC ACIDS RESEARCH

IF13.1

2015-02-04

OAAI

Benedetti, Fabrizio; Japaridze, Aleksandre; Dorier, Julien; Racko, Dusan; Kwapich, Robert; Burnier, Yannis; Dietler, Giovanni; Stasiak, Andrzej

Electrophoretic mobility of supercoiled, catenated and knotted DNA molecules

NUCLEIC ACIDS RESEARCH

IF13.1

2014-11-20

OAAI

Cebrian, Jorge; Kadomatsu-Hermosa, Maridian J.; Castan, Alicia; Martinez, Victor; Parra, Cristina; Jose Fernandez-Nestosa, Maria; Schaerer, Christian; Martinez-Robles, Maria-Luisa; Hernandez, Pablo; Krimer, Dora B.; Stasiak, Andrzej; Schvartzman, Jorge B.

DNA knots and DNA supercoiling DNA结和DNA超卷

CELL CYCLE

IF3.4

2014-11-04

OAAI

Witz, Guillaume; Dietler, Giovanni; Stasiak, Andrzej

研究方向